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Search of human proteins with 4507565
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4507565 tumor necrosis factor receptor superfamily, member
11a precursor [Homo sapiens]
(616 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4507565 tumor necrosis factor receptor superfamily, member 11... 1305 0.0
gi|4507581 CD40 antigen isoform 1 precursor [Homo sapiens] 150 3e-36
gi|23312371 CD40 antigen isoform 2 precursor [Homo sapiens] 135 1e-31
gi|4505039 lymphotoxin beta receptor [Homo sapiens] 109 7e-24
gi|4507577 tumor necrosis factor receptor 2 precursor [Homo sapi... 105 9e-23
gi|148743793 osteoprotegerin precursor [Homo sapiens] 103 6e-22
gi|14790170 tumor necrosis factor receptor superfamily, member 6... 92 1e-18
gi|4507585 tumor necrosis factor receptor superfamily, member 6b... 92 1e-18
gi|4507579 tumor necrosis factor receptor superfamily, member 4 ... 89 1e-17
gi|23200041 tumor necrosis factor receptor superfamily, member 1... 79 2e-14
gi|7657039 tumor necrosis factor receptor superfamily, member 21... 77 5e-14
gi|5730095 tumor necrosis factor receptor superfamily, member 9 ... 74 5e-13
gi|4505393 nerve growth factor receptor precursor [Homo sapiens] 64 3e-10
gi|23200023 tumor necrosis factor receptor superfamily, member 2... 59 2e-08
gi|23200021 tumor necrosis factor receptor superfamily, member 2... 59 2e-08
gi|89142745 tumor necrosis factor receptor superfamily, member 2... 59 2e-08
gi|4507569 tumor necrosis factor receptor superfamily, member 25... 59 2e-08
gi|68348711 tumor necrosis factor receptor superfamily, member 8... 55 2e-07
gi|23510423 tumor necrosis factor receptor superfamily, member 6... 54 6e-07
gi|23510421 tumor necrosis factor receptor superfamily, member 6... 54 6e-07
gi|4507583 tumor necrosis factor receptor superfamily, member 6 ... 54 6e-07
gi|4759246 tumor necrosis factor receptor superfamily, member 18... 52 1e-06
gi|23238197 tumor necrosis factor receptor superfamily, member 1... 52 1e-06
gi|4507575 tumor necrosis factor receptor 1 precursor [Homo sapi... 50 6e-06
gi|4507587 tumor necrosis factor receptor superfamily, member 7 ... 47 7e-05
gi|7710121 engrailed homeobox 2 [Homo sapiens] 44 3e-04
gi|4557733 latent transforming growth factor beta binding protei... 44 6e-04
gi|11140823 X-linked ectodysplasin receptor [Homo sapiens] 41 0.003
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 40 0.006
gi|23238194 tumor necrosis factor receptor superfamily, member 1... 39 0.014
>gi|4507565 tumor necrosis factor receptor superfamily, member 11a
precursor [Homo sapiens]
Length = 616
Score = 1305 bits (3376), Expect = 0.0
Identities = 616/616 (100%), Positives = 616/616 (100%)
Query: 1 MAPRARRRRPLFALLLLCALLARLQVALQIAPPCTSEKHYEHLGRCCNKCEPGKYMSSKC 60
MAPRARRRRPLFALLLLCALLARLQVALQIAPPCTSEKHYEHLGRCCNKCEPGKYMSSKC
Sbjct: 1 MAPRARRRRPLFALLLLCALLARLQVALQIAPPCTSEKHYEHLGRCCNKCEPGKYMSSKC 60
Query: 61 TTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACTAGYHW 120
TTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACTAGYHW
Sbjct: 61 TTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACTAGYHW 120
Query: 121 SQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWTNCTFLGK 180
SQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWTNCTFLGK
Sbjct: 121 SQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWTNCTFLGK 180
Query: 181 RVEHHGTEKSDAVCSSSLPARKPPNEPHVYLPGLIILLLFASVALVAAIIFGVCYRKKGK 240
RVEHHGTEKSDAVCSSSLPARKPPNEPHVYLPGLIILLLFASVALVAAIIFGVCYRKKGK
Sbjct: 181 RVEHHGTEKSDAVCSSSLPARKPPNEPHVYLPGLIILLLFASVALVAAIIFGVCYRKKGK 240
Query: 241 ALTANLWHWINEACGRLSGDKESSGDSCVSTHTANFGQQGACEGVLLLTLEEKTFPEDMC 300
ALTANLWHWINEACGRLSGDKESSGDSCVSTHTANFGQQGACEGVLLLTLEEKTFPEDMC
Sbjct: 241 ALTANLWHWINEACGRLSGDKESSGDSCVSTHTANFGQQGACEGVLLLTLEEKTFPEDMC 300
Query: 301 YPDQGGVCQGTCVGGGPYAQGEDARMLSLVSKTEIEEDSFRQMPTEDEYMDRPSQPTDQL 360
YPDQGGVCQGTCVGGGPYAQGEDARMLSLVSKTEIEEDSFRQMPTEDEYMDRPSQPTDQL
Sbjct: 301 YPDQGGVCQGTCVGGGPYAQGEDARMLSLVSKTEIEEDSFRQMPTEDEYMDRPSQPTDQL 360
Query: 361 LFLTEPGSKSTPPFSEPLEVGENDSLSQCFTGTQSTVGSESCNCTEPLCRTDWTPMSSEN 420
LFLTEPGSKSTPPFSEPLEVGENDSLSQCFTGTQSTVGSESCNCTEPLCRTDWTPMSSEN
Sbjct: 361 LFLTEPGSKSTPPFSEPLEVGENDSLSQCFTGTQSTVGSESCNCTEPLCRTDWTPMSSEN 420
Query: 421 YLQKEVDSGHCPHWAASPSPNWADVCTGCRNPPGEDCEPLVGSPKRGPLPQCAYGMGLPP 480
YLQKEVDSGHCPHWAASPSPNWADVCTGCRNPPGEDCEPLVGSPKRGPLPQCAYGMGLPP
Sbjct: 421 YLQKEVDSGHCPHWAASPSPNWADVCTGCRNPPGEDCEPLVGSPKRGPLPQCAYGMGLPP 480
Query: 481 EEEASRTEARDQPEDGADGRLPSSARAGAGSGSSPGGQSPASGNVTGNSNSTFISSGQVM 540
EEEASRTEARDQPEDGADGRLPSSARAGAGSGSSPGGQSPASGNVTGNSNSTFISSGQVM
Sbjct: 481 EEEASRTEARDQPEDGADGRLPSSARAGAGSGSSPGGQSPASGNVTGNSNSTFISSGQVM 540
Query: 541 NFKGDIIVVYVSQTSQEGAAAAAEPMGRPVQEETLARRDSFAGNGPRFPDPCGGPEGLRE 600
NFKGDIIVVYVSQTSQEGAAAAAEPMGRPVQEETLARRDSFAGNGPRFPDPCGGPEGLRE
Sbjct: 541 NFKGDIIVVYVSQTSQEGAAAAAEPMGRPVQEETLARRDSFAGNGPRFPDPCGGPEGLRE 600
Query: 601 PEKASRPVQEQGGAKA 616
PEKASRPVQEQGGAKA
Sbjct: 601 PEKASRPVQEQGGAKA 616
>gi|4507581 CD40 antigen isoform 1 precursor [Homo sapiens]
Length = 277
Score = 150 bits (380), Expect = 3e-36
Identities = 80/216 (37%), Positives = 109/216 (50%), Gaps = 2/216 (0%)
Query: 14 LLLLCALLARLQVALQIAPPCTS-EKHYEHLGRCCNKCEPGKYMSSKCTTTSDSVCLPCG 72
L L C L L A+ PP EK Y +CC+ C+PG+ + S CT +++ CLPCG
Sbjct: 4 LPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECLPCG 63
Query: 73 PDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACTAGYH-WSQDCECCRRNT 131
E+LD+WN E C HK CD L G S T C C G+H S+ CE C +
Sbjct: 64 ESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCVLHR 123
Query: 132 ECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWTNCTFLGKRVEHHGTEKSD 191
C+PG G + DT+C+PC G+FS+ S+ +KC PWT+C V+ GT K+D
Sbjct: 124 SCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVVQQAGTNKTD 183
Query: 192 AVCSSSLPARKPPNEPHVYLPGLIILLLFASVALVA 227
VC R P ++ ILL+ + VA
Sbjct: 184 VVCGPQDRLRALVVIPIIFGILFAILLVLVFIKKVA 219
>gi|23312371 CD40 antigen isoform 2 precursor [Homo sapiens]
Length = 203
Score = 135 bits (339), Expect = 1e-31
Identities = 65/162 (40%), Positives = 87/162 (53%), Gaps = 2/162 (1%)
Query: 14 LLLLCALLARLQVALQIAPPCTS-EKHYEHLGRCCNKCEPGKYMSSKCTTTSDSVCLPCG 72
L L C L L A+ PP EK Y +CC+ C+PG+ + S CT +++ CLPCG
Sbjct: 4 LPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECLPCG 63
Query: 73 PDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACTAGYH-WSQDCECCRRNT 131
E+LD+WN E C HK CD L G S T C C G+H S+ CE C +
Sbjct: 64 ESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCVLHR 123
Query: 132 ECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWT 173
C+PG G + DT+C+PC G+FS+ S+ +KC PWT
Sbjct: 124 SCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWT 165
Score = 36.2 bits (82), Expect = 0.091
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 125 ECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWTNCT-FLGKRVE 183
+CC + C PG +T C PC F D ++ C C LG RV+
Sbjct: 36 QCC---SLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYCDPNLGLRVQ 92
Query: 184 HHGTEKSDAVCS 195
GT ++D +C+
Sbjct: 93 QKGTSETDTICT 104
>gi|4505039 lymphotoxin beta receptor [Homo sapiens]
Length = 435
Score = 109 bits (273), Expect = 7e-24
Identities = 73/230 (31%), Positives = 106/230 (46%), Gaps = 18/230 (7%)
Query: 14 LLLLCALLARLQVALQIAPPCTSE---------KHYEHLGR-CCNKCEPGKYMSSKCTTT 63
+L L LLA Q Q PP SE ++YE R CC++C PG Y+S+KC+
Sbjct: 18 VLGLFGLLAASQP--QAVPPYASENQTCRDQEKEYYEPQHRICCSRCPPGTYVSAKCSRI 75
Query: 64 SDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACTAGYH---W 120
D+VC C + Y + WN C L + CD L + S +C C G W
Sbjct: 76 RDTVCATCAENSYNEHWNYLTICQLCRPCDPVMGLEEIAPCTSKRKTQCRCQPGMFCAAW 135
Query: 121 SQDCECCRRNTECAPGLGAQHPLQLNK-DTVCKPCLAGYFSDAFSSTDKCRPWTNCTFLG 179
+ +C C ++C PG A+ ++ K + C PC AG+F + S + +C+P T C G
Sbjct: 136 ALECTHCELLSDCPPGTEAELKDEVGKGNNHCVPCKAGHFQNTSSPSARCQPHTRCENQG 195
Query: 180 KRVEHHGTEKSDAVCSSSLPARKPPNEPHVYLPGLIILLLFASVALVAAI 229
GT +SD C + P P E + L +LL A L+A +
Sbjct: 196 LVEAAPGTAQSDTTCKN--PLEPLPPEMSGTMLMLAVLLPLAFFLLLATV 243
>gi|4507577 tumor necrosis factor receptor 2 precursor [Homo
sapiens]
Length = 461
Score = 105 bits (263), Expect = 9e-23
Identities = 64/186 (34%), Positives = 84/186 (45%), Gaps = 13/186 (6%)
Query: 34 CTSEKHYEHLGR-CCNKCEPGKYMSSKCTTTSDSVCLPCGPDEYLDSWNEEDKCL-LHKV 91
C ++Y+ + CC+KC PG++ CT TSD+VC C Y WN +CL
Sbjct: 40 CRLREYYDQTAQMCCSKCSPGQHAKVFCTKTSDTVCDSCEDSTYTQLWNWVPECLSCGSR 99
Query: 92 CDTGKALVAVVAGNSTTPRRCACTAGYHWS----QDCECCRRNTECAPGLGAQHPLQLNK 147
C + + V A R C C G++ + + C C +C PG G P
Sbjct: 100 CSSDQ--VETQACTREQNRICTCRPGWYCALSKQEGCRLCAPLRKCRPGFGVARPGTETS 157
Query: 148 DTVCKPCLAGYFSDAFSSTDKCRPWTNCTFLGKRVEHHGTEKSDAVCSSSLPARK-PPNE 206
D VCKPC G FS+ SSTD CRP C V G DAVC+S+ P R P
Sbjct: 158 DVVCKPCAPGTFSNTTSSTDICRPHQICNV----VAIPGNASMDAVCTSTSPTRSMAPGA 213
Query: 207 PHVYLP 212
H+ P
Sbjct: 214 VHLPQP 219
>gi|148743793 osteoprotegerin precursor [Homo sapiens]
Length = 401
Score = 103 bits (256), Expect = 6e-22
Identities = 64/190 (33%), Positives = 85/190 (44%), Gaps = 13/190 (6%)
Query: 16 LLCALLARLQVALQIAPPCTSEKHYEHLGR------CCNKCEPGKYMSSKCTTTSDSVCL 69
LLC L L ++++ T Y H C+KC PG Y+ CT +VC
Sbjct: 4 LLCCALVFLDISIKWTTQETFPPKYLHYDEETSHQLLCDKCPPGTYLKQHCTAKWKTVCA 63
Query: 70 PCGPDEYLDSWNEEDKCLL-HKVCDTGKALVAVVAG-NSTTPRRCACTAGYHWSQDCECC 127
PC Y DSW+ D+CL VC K L V N T R C C G + + E C
Sbjct: 64 PCPDHYYTDSWHTSDECLYCSPVC---KELQYVKQECNRTHNRVCECKEGRYL--EIEFC 118
Query: 128 RRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWTNCTFLGKRVEHHGT 187
++ C PG G ++TVCK C G+FS+ SS CR TNC+ G + G
Sbjct: 119 LKHRSCPPGFGVVQAGTPERNTVCKRCPDGFFSNETSSKAPCRKHTNCSVFGLLLTQKGN 178
Query: 188 EKSDAVCSSS 197
D +CS +
Sbjct: 179 ATHDNICSGN 188
>gi|14790170 tumor necrosis factor receptor superfamily, member 6b
[Homo sapiens]
Length = 300
Score = 92.4 bits (228), Expect = 1e-18
Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Query: 47 CNKCEPGKYMSSKCTTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNS 106
C +C PG ++ C S + C PC P Y WN ++C V G+ A ++
Sbjct: 49 CAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVL-CGEREEEARACHA 107
Query: 107 TTPRRCACTAGYHWSQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSST 166
T R C C G+ C + C PG G P +++T C+PC G FS + SS+
Sbjct: 108 THNRACRCRTGFF--AHAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSS 165
Query: 167 DKCRPWTNCTFLGKRVEHHGTEKSDAVCSS 196
++C+P NCT LG + G+ D +C+S
Sbjct: 166 EQCQPHRNCTALGLALNVPGSSSHDTLCTS 195
Score = 40.0 bits (92), Expect = 0.006
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 40 YEHLGRCCN--KCEPGKYMSSKCTTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKA 97
+ H G C C PG + + T + ++ C PC P + S + ++C H+ C T
Sbjct: 120 FAHAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSEQCQPHRNC-TALG 178
Query: 98 LVAVVAGNSTTPRRCACTAGYHWS------QDCE 125
L V G+S+ C G+ S ++CE
Sbjct: 179 LALNVPGSSSHDTLCTSCTGFPLSTRVPGAEECE 212
>gi|4507585 tumor necrosis factor receptor superfamily, member 6b
[Homo sapiens]
Length = 300
Score = 92.4 bits (228), Expect = 1e-18
Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Query: 47 CNKCEPGKYMSSKCTTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNS 106
C +C PG ++ C S + C PC P Y WN ++C V G+ A ++
Sbjct: 49 CAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVL-CGEREEEARACHA 107
Query: 107 TTPRRCACTAGYHWSQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSST 166
T R C C G+ C + C PG G P +++T C+PC G FS + SS+
Sbjct: 108 THNRACRCRTGFF--AHAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSS 165
Query: 167 DKCRPWTNCTFLGKRVEHHGTEKSDAVCSS 196
++C+P NCT LG + G+ D +C+S
Sbjct: 166 EQCQPHRNCTALGLALNVPGSSSHDTLCTS 195
Score = 40.0 bits (92), Expect = 0.006
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 40 YEHLGRCCN--KCEPGKYMSSKCTTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKA 97
+ H G C C PG + + T + ++ C PC P + S + ++C H+ C T
Sbjct: 120 FAHAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSEQCQPHRNC-TALG 178
Query: 98 LVAVVAGNSTTPRRCACTAGYHWS------QDCE 125
L V G+S+ C G+ S ++CE
Sbjct: 179 LALNVPGSSSHDTLCTSCTGFPLSTRVPGAEECE 212
>gi|4507579 tumor necrosis factor receptor superfamily, member 4
precursor [Homo sapiens]
Length = 277
Score = 89.0 bits (219), Expect = 1e-17
Identities = 70/210 (33%), Positives = 91/210 (43%), Gaps = 36/210 (17%)
Query: 1 MAPRARR--RRPLFALLLLCALLARLQVALQIAPPCTSEKHYEHLGRCCNKCEPGKYMSS 58
M ARR R P ALLLL L ++ C + Y RCC++C PG M S
Sbjct: 1 MCVGARRLGRGPCAALLLL-----GLGLSTVTGLHCVGDT-YPSNDRCCHECRPGNGMVS 54
Query: 59 KCTTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACTAGY 118
+C+ + ++VC PCGP Y D + + C C+ S + R+ CTA
Sbjct: 55 RCSRSQNTVCRPCGPGFYNDVVSSK-PCKPCTWCNL----------RSGSERKQLCTA-- 101
Query: 119 HWSQDCEC-CRRNTECAPGLGAQHPLQLNKDTV-CKPCLAGYFSDAFSSTDKCRPWTNCT 176
+QD C CR T+ PL K V C PC G+FS C+PWTNCT
Sbjct: 102 --TQDTVCRCRAGTQ---------PLDSYKPGVDCAPCPPGHFSP--GDNQACKPWTNCT 148
Query: 177 FLGKRVEHHGTEKSDAVCSSSLPARKPPNE 206
GK + SDA+C P P E
Sbjct: 149 LAGKHTLQPASNSSDAICEDRDPPATQPQE 178
>gi|23200041 tumor necrosis factor receptor superfamily, member 14
precursor [Homo sapiens]
Length = 283
Score = 78.6 bits (192), Expect = 2e-14
Identities = 46/152 (30%), Positives = 66/152 (43%), Gaps = 5/152 (3%)
Query: 31 APPCTSEKHYEHLGRCCNKCEPGKYMSSKCTTTSDSVCLPCGPDEYLDSWNEEDKCLLHK 90
A P E Y CC KC PG + C + +VC PC P Y+ N KCL +
Sbjct: 38 ALPSCKEDEYPVGSECCPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLNGLSKCLQCQ 97
Query: 91 VCDTGKALVAVVAGNSTTPRRCACTAGYHW----SQDCECCRRNTECAPGLGAQHPLQLN 146
+CD L A + T C C+ G+ C CR +PG Q +
Sbjct: 98 MCDPAMGLRASRNCSRTENAVCGCSPGHFCIVQDGDHCAACRAYATSSPGQRVQKGGTES 157
Query: 147 KDTVCKPCLAGYFSDAFSSTDKCRPWTNCTFL 178
+DT+C+ C G FS + ++C+ T C++L
Sbjct: 158 QDTLCQNCPPGTFSPN-GTLEECQHQTKCSWL 188
>gi|7657039 tumor necrosis factor receptor superfamily, member 21
precursor [Homo sapiens]
Length = 655
Score = 77.0 bits (188), Expect = 5e-14
Identities = 54/175 (30%), Positives = 75/175 (42%), Gaps = 12/175 (6%)
Query: 40 YEHLGRC------CNKCEPGKYMSSKCTTTSDSVCLPCGPDEYLDSWNEEDKCL-LHKVC 92
Y H+ R C+KC G Y+S CT TS VC C + N +KC + C
Sbjct: 54 YRHVDRATGQVLTCDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHENGIEKCHDCSQPC 113
Query: 93 DTGKALVAVVAGNSTTPRRCACTAGYHWSQDCECCRRNTECAPGLGAQHPLQLNKDTVCK 152
++ + + T R C C G S C +T C G G + +D CK
Sbjct: 114 PW--PMIEKLPCAALTDRECTCPPGMFQSN--ATCAPHTVCPVGWGVRKKGTETEDVRCK 169
Query: 153 PCLAGYFSDAFSSTDKCRPWTNCTFLGKRVEHHGTEKSDAVCSSSLPARKPPNEP 207
C G FSD SS KC+ +T+C V GT+++D VC +LP+ P
Sbjct: 170 QCARGTFSDVPSSVMKCKAYTDCLSQNLVVIKPGTKETDNVC-GTLPSFSSSTSP 223
>gi|5730095 tumor necrosis factor receptor superfamily, member 9
precursor [Homo sapiens]
Length = 255
Score = 73.6 bits (179), Expect = 5e-13
Identities = 56/204 (27%), Positives = 83/204 (40%), Gaps = 45/204 (22%)
Query: 47 CNKCEPGKYMSSKCTTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAG-- 104
C+ C G + C + +C PC P+ + + + + CD + V
Sbjct: 28 CSNCPAGTF----CDNNRNQICSPCPPNSFSSAGGQ-------RTCDICRQCKGVFRTRK 76
Query: 105 --NSTTPRRCACTAGYHW-SQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSD 161
+ST+ C CT G+H C C + +C G +L K CK C G F+D
Sbjct: 77 ECSSTSNAECDCTPGFHCLGAGCSMCEQ--DCKQGQ------ELTKKG-CKDCCFGTFND 127
Query: 162 AFSSTDKCRPWTNCTFLGKRVEHHGTEKSDAVCSSS--------------LPARKPPNEP 207
CRPWTNC+ GK V +GT++ D VC S PAR+P + P
Sbjct: 128 --QKRGICRPWTNCSLDGKSVLVNGTKERDVVCGPSPADLSPGASSVTPPAPAREPGHSP 185
Query: 208 HVYLPGLIILLLFASVALVAAIIF 231
+ + L S AL+ + F
Sbjct: 186 QI----ISFFLALTSTALLFLLFF 205
>gi|4505393 nerve growth factor receptor precursor [Homo sapiens]
Length = 427
Score = 64.3 bits (155), Expect = 3e-10
Identities = 54/189 (28%), Positives = 77/189 (40%), Gaps = 18/189 (9%)
Query: 20 LLARLQVALQIAPPCTSEKHYEHLGRCCNKCEPGKYMSSKCTTTSDSVCLPCGPDEYLDS 79
LL L V+L A Y H G CC C G+ ++ C + +VC PC LDS
Sbjct: 17 LLLLLGVSLGGAKEACPTGLYTHSGECCKACNLGEGVAQPCGA-NQTVCEPC-----LDS 70
Query: 80 WNEEDKCLLHKVCDTGKALVAVVAGNSTTPRR----CACTAGYHWSQD---CECCRRNTE 132
D + C V + + ++ C C GY+ + CE CR
Sbjct: 71 VTFSDVVSATEPCKPCTECVGLQSMSAPCVEADDAVCRCAYGYYQDETTGRCEACR---V 127
Query: 133 CAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWTNCTFLGKRVEHHGTEKSDA 192
C G G Q ++TVC+ C G +SD + D C P T C +++ T +DA
Sbjct: 128 CEAGSGLVFSCQDKQNTVCEECPDGTYSDEANHVDPCLPCTVCEDTERQL-RECTRWADA 186
Query: 193 VCSSSLPAR 201
C +P R
Sbjct: 187 EC-EEIPGR 194
>gi|23200023 tumor necrosis factor receptor superfamily, member 25
isoform 3 precursor [Homo sapiens]
Length = 380
Score = 58.5 bits (140), Expect = 2e-08
Identities = 51/173 (29%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 1 MAPRARRRRPLFALLLLCALLARLQVALQIAP-PCTSEKHYEHLGRCCNKCEPGKYMSSK 59
M R R + A LLL L AR Q + C + H + CC C G Y+ +
Sbjct: 1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP 60
Query: 60 CT-TTSDSVCLPCGPDEYLDSW--NEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACTA 116
CT +S CL C D +L +W + +C + CD + VA+ ++ RC C
Sbjct: 61 CTEPCGNSTCLVCPQDTFL-AWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKP 119
Query: 117 GYHWSQDCECCRRNTE----CAPGL--GAQHP----LQLNKDTVCKPCLAGYF 159
G W +C+ + + C P L GA H L +DT C CL G++
Sbjct: 120 G--WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFY 170
>gi|23200021 tumor necrosis factor receptor superfamily, member 25
isoform 1 precursor [Homo sapiens]
Length = 426
Score = 58.5 bits (140), Expect = 2e-08
Identities = 51/173 (29%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 1 MAPRARRRRPLFALLLLCALLARLQVALQIAP-PCTSEKHYEHLGRCCNKCEPGKYMSSK 59
M R R + A LLL L AR Q + C + H + CC C G Y+ +
Sbjct: 1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP 60
Query: 60 CT-TTSDSVCLPCGPDEYLDSW--NEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACTA 116
CT +S CL C D +L +W + +C + CD + VA+ ++ RC C
Sbjct: 61 CTEPCGNSTCLVCPQDTFL-AWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKP 119
Query: 117 GYHWSQDCECCRRNTE----CAPGL--GAQHP----LQLNKDTVCKPCLAGYF 159
G W +C+ + + C P L GA H L +DT C CL G++
Sbjct: 120 G--WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFY 170
>gi|89142745 tumor necrosis factor receptor superfamily, member 25
isoform 12 precursor [Homo sapiens]
Length = 181
Score = 58.5 bits (140), Expect = 2e-08
Identities = 51/173 (29%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 1 MAPRARRRRPLFALLLLCALLARLQVALQIAP-PCTSEKHYEHLGRCCNKCEPGKYMSSK 59
M R R + A LLL L AR Q + C + H + CC C G Y+ +
Sbjct: 1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP 60
Query: 60 CT-TTSDSVCLPCGPDEYLDSW--NEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACTA 116
CT +S CL C D +L +W + +C + CD + VA+ ++ RC C
Sbjct: 61 CTEPCGNSTCLVCPQDTFL-AWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKP 119
Query: 117 GYHWSQDCECCRRNTE----CAPGL--GAQHP----LQLNKDTVCKPCLAGYF 159
G W +C+ + + C P L GA H L +DT C CL G++
Sbjct: 120 G--WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFY 170
>gi|4507569 tumor necrosis factor receptor superfamily, member 25
isoform 2 precursor [Homo sapiens]
Length = 417
Score = 58.5 bits (140), Expect = 2e-08
Identities = 51/173 (29%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 1 MAPRARRRRPLFALLLLCALLARLQVALQIAP-PCTSEKHYEHLGRCCNKCEPGKYMSSK 59
M R R + A LLL L AR Q + C + H + CC C G Y+ +
Sbjct: 1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP 60
Query: 60 CT-TTSDSVCLPCGPDEYLDSW--NEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACTA 116
CT +S CL C D +L +W + +C + CD + VA+ ++ RC C
Sbjct: 61 CTEPCGNSTCLVCPQDTFL-AWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKP 119
Query: 117 GYHWSQDCECCRRNTE----CAPGL--GAQHP----LQLNKDTVCKPCLAGYF 159
G W +C+ + + C P L GA H L +DT C CL G++
Sbjct: 120 G--WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFY 170
>gi|68348711 tumor necrosis factor receptor superfamily, member 8
isoform 1 precursor [Homo sapiens]
Length = 595
Score = 54.7 bits (130), Expect = 2e-07
Identities = 38/130 (29%), Positives = 53/130 (40%), Gaps = 9/130 (6%)
Query: 45 RCCNKCEPGKYMSSKCTTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAG 104
RCC +C G + + +C C PD YLD E D+C C LV
Sbjct: 43 RCCYRCPMGLFPTQQCPQRPTDCRKQCEPDYYLD---EADRCTACVTCSRDD-LVEKTPC 98
Query: 105 NSTTPRRCACTAGYHWS----QDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFS 160
+ R C C G S C C ++ C G+ + P K+TVC+P G S
Sbjct: 99 AWNSSRVCECRPGMFCSTSAVNSCARCFFHSVCPAGMIVKFPGTAQKNTVCEPASPG-VS 157
Query: 161 DAFSSTDKCR 170
A +S + C+
Sbjct: 158 PACASPENCK 167
>gi|23510423 tumor necrosis factor receptor superfamily, member 6
isoform 3 precursor [Homo sapiens]
Length = 220
Score = 53.5 bits (127), Expect = 6e-07
Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 42 HLGRCCNK-CEPGKYMSSKCTTTSDSV-CLPCGPD-EYLDSWNEEDKCLLHKVCDTGKAL 98
H G+ C+K C PG+ + CT D C+PC EY D + KC ++CD G L
Sbjct: 54 HDGQFCHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGL 113
Query: 99 VAVVAGNSTTPRRCACTAGYHW-SQDCECCRRNTECAPGLGAQHPLQLNKDTVCK 152
+ T +C C + S CE C T+C G+ + L +T CK
Sbjct: 114 EVEINCTRTQNTKCRCKPNFFCNSTVCEHCDPCTKCEHGIIKE--CTLTSNTKCK 166
>gi|23510421 tumor necrosis factor receptor superfamily, member 6
isoform 2 precursor [Homo sapiens]
Length = 314
Score = 53.5 bits (127), Expect = 6e-07
Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 42 HLGRCCNK-CEPGKYMSSKCTTTSDSV-CLPCGPD-EYLDSWNEEDKCLLHKVCDTGKAL 98
H G+ C+K C PG+ + CT D C+PC EY D + KC ++CD G L
Sbjct: 54 HDGQFCHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGL 113
Query: 99 VAVVAGNSTTPRRCACTAGYHW-SQDCECCRRNTECAPGLGAQHPLQLNKDTVCK 152
+ T +C C + S CE C T+C G+ + L +T CK
Sbjct: 114 EVEINCTRTQNTKCRCKPNFFCNSTVCEHCDPCTKCEHGIIKE--CTLTSNTKCK 166
>gi|4507583 tumor necrosis factor receptor superfamily, member 6
isoform 1 precursor [Homo sapiens]
Length = 335
Score = 53.5 bits (127), Expect = 6e-07
Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 42 HLGRCCNK-CEPGKYMSSKCTTTSDSV-CLPCGPD-EYLDSWNEEDKCLLHKVCDTGKAL 98
H G+ C+K C PG+ + CT D C+PC EY D + KC ++CD G L
Sbjct: 54 HDGQFCHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGL 113
Query: 99 VAVVAGNSTTPRRCACTAGYHW-SQDCECCRRNTECAPGLGAQHPLQLNKDTVCK 152
+ T +C C + S CE C T+C G+ + L +T CK
Sbjct: 114 EVEINCTRTQNTKCRCKPNFFCNSTVCEHCDPCTKCEHGIIKE--CTLTSNTKCK 166
>gi|4759246 tumor necrosis factor receptor superfamily, member 18
isoform 1 precursor [Homo sapiens]
Length = 241
Score = 52.4 bits (124), Expect = 1e-06
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 8/123 (6%)
Query: 112 CACTAG-YHWSQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCR 170
C C +H C R+ C PG G Q + + C C +G FS C+
Sbjct: 72 CMCVQPEFHCGDPCCTTCRHHPCPPGQGVQSQGKFSFGFQCIDCASGTFSGGHEG--HCK 129
Query: 171 PWTNCTFLGKRVEHHGTEKSDAVCSSSLPARKPPNEPHVYLPGLIILLLFASVALVAAII 230
PWT+CT G G + +AVC PP EP +L +++L + A V L+ +
Sbjct: 130 PWTDCTQFGFLTVFPGNKTHNAVCVPG----SPPAEPLGWLT-VVLLAVAACVLLLTSAQ 184
Query: 231 FGV 233
G+
Sbjct: 185 LGL 187
>gi|23238197 tumor necrosis factor receptor superfamily, member 18
isoform 3 precursor [Homo sapiens]
Length = 234
Score = 52.4 bits (124), Expect = 1e-06
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 8/123 (6%)
Query: 112 CACTAG-YHWSQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCR 170
C C +H C R+ C PG G Q + + C C +G FS C+
Sbjct: 72 CMCVQPEFHCGDPCCTTCRHHPCPPGQGVQSQGKFSFGFQCIDCASGTFSGGHEG--HCK 129
Query: 171 PWTNCTFLGKRVEHHGTEKSDAVCSSSLPARKPPNEPHVYLPGLIILLLFASVALVAAII 230
PWT+CT G G + +AVC PP EP +L +++L + A V L+ +
Sbjct: 130 PWTDCTQFGFLTVFPGNKTHNAVCVPG----SPPAEPLGWLT-VVLLAVAACVLLLTSAQ 184
Query: 231 FGV 233
G+
Sbjct: 185 LGL 187
>gi|4507575 tumor necrosis factor receptor 1 precursor [Homo
sapiens]
Length = 455
Score = 50.1 bits (118), Expect = 6e-06
Identities = 56/233 (24%), Positives = 92/233 (39%), Gaps = 36/233 (15%)
Query: 39 HYEHLGRCCNKCEPGKYMSSKCT-TTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKA 97
H ++ CC KC G Y+ + C D+ C C + S N CL C
Sbjct: 51 HPQNNSICCTKCHKGTYLYNDCPGPGQDTDCRECESGSFTASENHLRHCLSCSKCRKEMG 110
Query: 98 LVAVVAGNSTTPRRCACTAG---YHWSQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPC 154
V + + C C ++WS++ C + C G Q ++TVC C
Sbjct: 111 QVEISSCTVDRDTVCGCRKNQYRHYWSENLFQCFNCSLCLNGT-VHLSCQEKQNTVC-TC 168
Query: 155 LAGYF--SDAFSSTDKCRPWTNCTFLG-KRVEH-HGTEKSDAVCSSSLPARKPPNEPHVY 210
AG+F + S C+ CT L ++E+ GTE S V
Sbjct: 169 HAGFFLRENECVSCSNCKKSLECTKLCLPQIENVKGTEDSGTT---------------VL 213
Query: 211 LPGLIILLLFASVALVAAIIFGVCYR-KKGKALTANLWHWINEACGRLSGDKE 262
LP L++F + L++ + G+ YR ++ K+ ++ CG+ + +KE
Sbjct: 214 LP----LVIFFGLCLLSLLFIGLMYRYQRWKSKLYSI------VCGKSTPEKE 256
>gi|4507587 tumor necrosis factor receptor superfamily, member 7
precursor [Homo sapiens]
Length = 260
Score = 46.6 bits (109), Expect = 7e-05
Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 11/122 (9%)
Query: 17 LCALLARLQVALQIAPPCTSEKHYEHLGR-CCNKCEPGKYMSSKCTTTSDSV-CLPCGPD 74
LC L + ++ AP E+HY G+ CC CEPG ++ C + C PC P
Sbjct: 9 LCVLGTLVGLSATPAPKSCPERHYWAQGKLCCQMCEPGTFLVKDCDQHRKAAQCDPCIPG 68
Query: 75 -EYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACTAGYHWSQDCECCRRNTEC 133
+ + C + C++G + V T CAC G+ +D EC TEC
Sbjct: 69 VSFSPDHHTRPHCESCRHCNSG---LLVRNCTITANAECACRNGWQ-CRDKEC----TEC 120
Query: 134 AP 135
P
Sbjct: 121 DP 122
>gi|7710121 engrailed homeobox 2 [Homo sapiens]
Length = 333
Score = 44.3 bits (103), Expect = 3e-04
Identities = 44/136 (32%), Positives = 49/136 (36%), Gaps = 21/136 (15%)
Query: 458 EPLVGSPKRGPL--PQCAYGMGLPPEEEASRTEARDQPEDGADGRLPSSARAGAGSGSSP 515
E L+GS R P P CA G G P S D P DG G S GA G P
Sbjct: 119 EQLLGSGSREPRQNPPCAPGAGGPLPAAGS-----DSPGDGEGGSKTLSLHGGAKKGGDP 173
Query: 516 GGQSPASGNVTGNSNSTFISSGQVMNFKGDIIVVYVSQTSQEGAAAAAEPMGRPVQEETL 575
GG S G GD+ V S +SQ GA A+PM P
Sbjct: 174 GGPLDGSLKARGLGG-------------GDLSVSSDSDSSQAGANLGAQPMLWPAW-VYC 219
Query: 576 ARRDSFAGNGPRFPDP 591
R +GPR P
Sbjct: 220 TRYSDRPSSGPRSRKP 235
>gi|4557733 latent transforming growth factor beta binding protein 2
[Homo sapiens]
Length = 1821
Score = 43.5 bits (101), Expect = 6e-04
Identities = 41/144 (28%), Positives = 55/144 (38%), Gaps = 16/144 (11%)
Query: 44 GRC--CNKCE-PGKYMSSKCTTTSDS-VCLPC--GPDEYLDSWNEEDKCLLHKVCDTGKA 97
G C N+C PG +C + S CL C G S + ++CL VC GK
Sbjct: 966 GHCQDINECRHPGTCPDGRCVNSPGSYTCLACEEGYRGQSGSCVDVNECLTPGVCAHGKC 1025
Query: 98 LVAVVAGNSTTPRRCACTAGYHWSQDCECCRRNTECAPGLGAQHPLQLNKD--TVCKPCL 155
N RC+C GY + D + C+ ECA L LN + C C
Sbjct: 1026 T------NLEGSFRCSCEQGYEVTSDEKGCQDVDECASRASCPTGLCLNTEGSFACSACE 1079
Query: 156 AGYFSDAFSSTDKCRPWTNCTFLG 179
GY+ + + C C F G
Sbjct: 1080 NGYWVNEDGTA--CEDLDECAFPG 1101
Score = 33.5 bits (75), Expect = 0.59
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 95 GKALVAVVAGNSTTPRRCACTAGYHWSQDCECC 127
G A + V G +TT C CT G W C+ C
Sbjct: 1419 GHAPCSSVLGRNTTQAECCCTQGASWGDACDLC 1451
Score = 32.3 bits (72), Expect = 1.3
Identities = 27/114 (23%), Positives = 41/114 (35%), Gaps = 22/114 (19%)
Query: 34 CTSEKHYEHLGRCC---NKCEPGKYMSSKCTTTSDSVCLPCGPDEYLDSWNEEDKCL--- 87
C HY+ + C ++C+ + +C T S C P LD + +C+
Sbjct: 1513 CNPGFHYDASHKKCEDHDECQDLACENGECVNTEGSFHCFCSPPLTLDL--SQQRCMNST 1570
Query: 88 ----------LHK-VC---DTGKALVAVVAGNSTTPRRCACTAGYHWSQDCECC 127
+H +C T + G+ TT C C G WSQ C C
Sbjct: 1571 SSTEDLPDHDIHMDICWKKVTNDVCSEPLRGHRTTYTECCCQDGEAWSQQCALC 1624
>gi|11140823 X-linked ectodysplasin receptor [Homo sapiens]
Length = 297
Score = 41.2 bits (95), Expect = 0.003
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 8/85 (9%)
Query: 34 CTSEKHYEHLGRC--CNKCEPGKYMSSKCT--TTSDSVCLPCGPDEYLDSWNEEDKCLLH 89
C ++++ GRC C +C PG+ +S C D+ C C P Y SW +C
Sbjct: 3 CQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHH-RC--- 58
Query: 90 KVCDTGKALVAVVAGNSTTPRRCAC 114
+ C T + V N T C
Sbjct: 59 QSCITCAVINRVQKVNCTATSNAVC 83
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 40.0 bits (92), Expect = 0.006
Identities = 41/174 (23%), Positives = 64/174 (36%), Gaps = 21/174 (12%)
Query: 443 ADVCTGCRNPPGEDCE--PLVGSPKRGPLPQCAYGMGLPPEEEASRTEARDQPEDGADGR 500
A G +PPG P +P+ GP P G+ EE + D P +
Sbjct: 1638 ASAAPGDPHPPGPPAPAAPAPAAPQPGPDPPPGTDSGI---EEVDSRSSSDHPLETISSA 1694
Query: 501 LPSSARAGAGSGSSPGGQSPASGNVTGNSNSTFISSGQVMNFKGDIIVVYVSQTSQEGAA 560
S+ + G GS+ GG +G ++SG + D V Y+ + G++
Sbjct: 1695 STLSSLSAEGGGSAGGGGGAGAG----------VASGPELL---DTYVAYLDGQAFGGSS 1741
Query: 561 AAAEPMGRPVQEETLARRDSFAGNGPRFPDPCGGPEGLREPEKASRPVQEQGGA 614
P + + R + +G P P G GLR+P + P GA
Sbjct: 1742 TPGPPYPPQLMTPSKLRGRALGASGGLRPGPSG---GLRDPVTPTSPTVSVTGA 1792
Score = 33.1 bits (74), Expect = 0.77
Identities = 40/157 (25%), Positives = 59/157 (37%), Gaps = 24/157 (15%)
Query: 450 RNPPGEDCEPLVGSPK-----RGPLPQCAYGMGLPPEEEASRTEARDQPEDGADGRLPSS 504
RN +D P SPK RGP G+ +PP + ++ D P
Sbjct: 400 RNHREQDVVPFQESPKYAARRRGPP---GTGLTVPPALLRANSDTSMALPDWMVFSAP-- 454
Query: 505 ARAGAGSGSSPGGQSPASGNVTGNSNSTFISSGQVMNFKGDIIVVYVSQTSQEGAAAAAE 564
GA S +PG S + G ++ +T +SSG + S +S GA A +
Sbjct: 455 ---GAASSGAPGPTSGSQGQSQPSAPTTKLSSGTLR-----------SASSPRGARARSP 500
Query: 565 PMGRPVQEETLARRDSFAGNGPRFPDPCGGPEGLREP 601
GR ++ R + +G P GG G P
Sbjct: 501 SRGRHPEDAKRQPRGRPSSSGTPREGPAGGTGGSGGP 537
>gi|23238194 tumor necrosis factor receptor superfamily, member 18
isoform 2 precursor [Homo sapiens]
Length = 255
Score = 38.9 bits (89), Expect = 0.014
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 112 CACTAG-YHWSQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCR 170
C C +H C R+ C PG G Q + + C C +G FS C+
Sbjct: 72 CMCVQPEFHCGDPCCTTCRHHPCPPGQGVQSQGKFSFGFQCIDCASGTFSGGHEG--HCK 129
Query: 171 PWTNCTFLGKR 181
PWT+C + +R
Sbjct: 130 PWTDCCWRCRR 140
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.133 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,306,933
Number of Sequences: 37866
Number of extensions: 1687704
Number of successful extensions: 7672
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 195
Number of HSP's that attempted gapping in prelim test: 6986
Number of HSP's gapped (non-prelim): 812
length of query: 616
length of database: 18,247,518
effective HSP length: 108
effective length of query: 508
effective length of database: 14,157,990
effective search space: 7192258920
effective search space used: 7192258920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.