Guide to the Human Genome
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Name: TNFRSF18 Sequence: fasta or formatted (234aa) NCBI GI: 23238197
Description:

tumor necrosis factor receptor superfamily, member 18 isoform 3 precursor

Referenced in:

TNF and Related Signals

Other entries for this name:
alt prot [255aa] tumor necrosis factor receptor superfamily, member 18 isoform 2 p...
alt prot [241aa] tumor necrosis factor receptor superfamily, member 18 isoform 1 p...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         16           2
 C cysteine            9.8         23           2
 D aspartate           3.4          8           1
 E glutamate           6.0         14           3
 F phenylalanine       4.3         10           1
 G glycine            12.4         29           2
 H histidine           3.8          9           2
 I isoleucine          0.9          2           1
 K lysine              2.1          5           1
 L leucine            10.7         25           3
 M methionine          1.3          3           1
 N asparagine          0.9          2           1
 P proline             7.7         18           2
 Q glutamine           5.1         12           1
 R arginine            5.6         13           1
 S serine              4.7         11           1
 T threonine           6.8         16           2
 V valine              5.1         12           2
 W tryptophan          2.1          5           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor necrosis factor receptor superfamily, member 1... 
TNFRSF18              0.984   tumor necrosis factor receptor superfamily, member 18...
TNFRSF18              0.590   tumor necrosis factor receptor superfamily, member 1...
TNFRSF9               0.087   tumor necrosis factor receptor superfamily, member 9 ...
TNFRSF4               0.077   tumor necrosis factor receptor superfamily, member 4 ...
TNFRSF6B              0.059   tumor necrosis factor receptor superfamily, member 6...
TNFRSF6B              0.059   tumor necrosis factor receptor superfamily, member 6b...
TNFRSF11A             0.055   tumor necrosis factor receptor superfamily, member 11...
TNFRSF11B             0.051   osteoprotegerin precursor 
TNFRSF21              0.051   tumor necrosis factor receptor superfamily, member 21...
CD40                  0.042   CD40 antigen isoform 1 precursor 
TNFRSF1B              0.040   tumor necrosis factor receptor 2 precursor 
LTBR                  0.038   lymphotoxin beta receptor 
CD40                  0.028   CD40 antigen isoform 2 precursor 
FBN2                  0.024   fibrillin 2 precursor 
LOC728318             0.024   PREDICTED: hypothetical protein 
LOC728318             0.024   PREDICTED: hypothetical protein 
LOC728318             0.024   PREDICTED: hypothetical protein 
LAMB2                 0.022   laminin, beta 2 precursor 
KRTAP5-1              0.022   keratin associated protein 5-1 
PEAR1                 0.020   platelet endothelial aggregation receptor 1 
KRTAP5-4              0.020   keratin associated protein 5-4 
TNFRSF14              0.020   tumor necrosis factor receptor superfamily, member 1...
EGFR                  0.018   epidermal growth factor receptor isoform a precursor...
EGFR                  0.018   epidermal growth factor receptor isoform d precursor...
EGFR                  0.018   epidermal growth factor receptor isoform c precursor...
EGFR                  0.018   epidermal growth factor receptor isoform b precursor...
VLDLR                 0.018   very low density lipoprotein receptor isoform b [Hom...
VLDLR                 0.018   very low density lipoprotein receptor isoform a [Hom...
EDAR                  0.018   ectodysplasin A receptor precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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