Guide to the Human Genome
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Name: EDA2R Sequence: fasta or formatted (297aa) NCBI GI: 11140823
Description:

X-linked ectodysplasin receptor

Referenced in:

TNF and Related Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         17           1
 C cysteine            7.1         21           1
 D aspartate           4.0         12           2
 E glutamate           7.7         23           2
 F phenylalanine       5.1         15           2
 G glycine             6.4         19           2
 H histidine           2.0          6           2
 I isoleucine          2.4          7           1
 K lysine              3.4         10           1
 L leucine             7.7         23           2
 M methionine          0.7          2           1
 N asparagine          3.0          9           1
 P proline             6.4         19           2
 Q glutamine           6.7         20           1
 R arginine            4.0         12           2
 S serine              9.8         29           3
 T threonine           8.1         24           1
 V valine              6.1         18           2
 W tryptophan          1.3          4           1
 Y tyrosine            2.4          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   X-linked ectodysplasin receptor 
TNFRSF19              0.271   tumor necrosis factor receptor superfamily, member 1...
TNFRSF19              0.271   tumor necrosis factor receptor superfamily, member 1...
EDAR                  0.066   ectodysplasin A receptor precursor 
RELT                  0.051   RELT tumor necrosis factor receptor precursor 
RELT                  0.051   RELT tumor necrosis factor receptor precursor 
CD27                  0.040   tumor necrosis factor receptor superfamily, member 7 ...
TNFRSF1A              0.038   tumor necrosis factor receptor 1 precursor 
TNFRSF1B              0.038   tumor necrosis factor receptor 2 precursor 
TNFRSF14              0.038   tumor necrosis factor receptor superfamily, member 1...
LTBR                  0.035   lymphotoxin beta receptor 
TNFRSF6B              0.030   tumor necrosis factor receptor superfamily, member 6...
TNFRSF6B              0.030   tumor necrosis factor receptor superfamily, member 6b...
TNFRSF11A             0.026   tumor necrosis factor receptor superfamily, member 11...
TNFRSF11B             0.025   osteoprotegerin precursor 
SVEP1                 0.023   polydom 
EPHB6                 0.020   ephrin receptor EphB6 precursor 
TNFRSF25              0.020   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.018   tumor necrosis factor receptor superfamily, member 2...
TNFRSF8               0.017   tumor necrosis factor receptor superfamily, member 8...
TNFRSF21              0.017   tumor necrosis factor receptor superfamily, member 21...
ADAM15                0.015   a disintegrin and metalloproteinase domain 15 isofor...
ADAM15                0.015   a disintegrin and metalloproteinase domain 15 isofor...
TNFRSF25              0.015   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.015   tumor necrosis factor receptor superfamily, member 25...
TNFRSF13B             0.015   tumor necrosis factor receptor 13B 
CD40                  0.015   CD40 antigen isoform 1 precursor 
CD40                  0.015   CD40 antigen isoform 2 precursor 
SCARF2                0.015   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.015   scavenger receptor class F, member 2 isoform 2 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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