Guide to the Human Genome
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Name: TNFRSF11A Sequence: fasta or formatted (616aa) NCBI GI: 4507565
Description:

tumor necrosis factor receptor superfamily, member 11a precursor

Referenced in:

TNF and Related Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         50           5
 C cysteine            6.2         38           2
 D aspartate           4.9         30           1
 E glutamate           7.5         46           3
 F phenylalanine       2.6         16           1
 G glycine             9.4         58           3
 H histidine           1.9         12           2
 I isoleucine          1.6         10           2
 K lysine              4.1         25           2
 L leucine             8.0         49           4
 M methionine          1.6         10           1
 N asparagine          3.2         20           1
 P proline             8.4         52           2
 Q glutamine           4.1         25           2
 R arginine            5.2         32           4
 S serine              8.9         55           3
 T threonine           6.0         37           3
 V valine              4.9         30           2
 W tryptophan          1.3          8           1
 Y tyrosine            2.1         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor necrosis factor receptor superfamily, member 11... 
CD40                  0.098   CD40 antigen isoform 1 precursor 
CD40                  0.086   CD40 antigen isoform 2 precursor 
LTBR                  0.066   lymphotoxin beta receptor 
TNFRSF1B              0.062   tumor necrosis factor receptor 2 precursor 
TNFRSF11B             0.061   osteoprotegerin precursor 
TNFRSF6B              0.052   tumor necrosis factor receptor superfamily, member 6...
TNFRSF6B              0.052   tumor necrosis factor receptor superfamily, member 6b...
TNFRSF4               0.050   tumor necrosis factor receptor superfamily, member 4 ...
TNFRSF14              0.042   tumor necrosis factor receptor superfamily, member 1...
TNFRSF21              0.041   tumor necrosis factor receptor superfamily, member 21...
TNFRSF9               0.038   tumor necrosis factor receptor superfamily, member 9 ...
NGFR                  0.030   nerve growth factor receptor precursor 
TNFRSF25              0.027   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.027   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.027   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.027   tumor necrosis factor receptor superfamily, member 25...
TNFRSF8               0.023   tumor necrosis factor receptor superfamily, member 8...
FAS                   0.023   tumor necrosis factor receptor superfamily, member 6...
FAS                   0.023   tumor necrosis factor receptor superfamily, member 6...
FAS                   0.023   tumor necrosis factor receptor superfamily, member 6 ...
TNFRSF18              0.021   tumor necrosis factor receptor superfamily, member 18...
TNFRSF18              0.021   tumor necrosis factor receptor superfamily, member 1...
TNFRSF1A              0.020   tumor necrosis factor receptor 1 precursor 
CD27                  0.017   tumor necrosis factor receptor superfamily, member 7 ...
EN2                   0.015   engrailed homeobox 2 
LTBP2                 0.015   latent transforming growth factor beta binding protei...
EDA2R                 0.013   X-linked ectodysplasin receptor 
SHANK1                0.012   SH3 and multiple ankyrin repeat domains 1 
TNFRSF18              0.011   tumor necrosis factor receptor superfamily, member 1...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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