Guide to the Human Genome
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Name: TNFRSF18 Sequence: fasta or formatted (255aa) NCBI GI: 23238194
Description:

tumor necrosis factor receptor superfamily, member 18 isoform 2 precursor

Referenced in:

TNF and Related Signals

Other entries for this name:
alt prot [234aa] tumor necrosis factor receptor superfamily, member 18 isoform 3 p...
alt prot [241aa] tumor necrosis factor receptor superfamily, member 18 isoform 1 p...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         24           4
 C cysteine           10.2         26           2
 D aspartate           3.5          9           1
 E glutamate           4.3         11           2
 F phenylalanine       2.4          6           1
 G glycine            14.5         37           2
 H histidine           2.7          7           2
 I isoleucine          0.4          1           1
 K lysine              2.0          5           1
 L leucine             5.5         14           3
 M methionine          1.2          3           1
 N asparagine          0.0          0           0
 P proline            11.0         28           2
 Q glutamine           5.5         14           2
 R arginine            9.4         24           3
 S serine              7.8         20           2
 T threonine           5.1         13           2
 V valine              2.0          5           1
 W tryptophan          2.7          7           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor necrosis factor receptor superfamily, member 1... 
TNFRSF18              0.529   tumor necrosis factor receptor superfamily, member 18...
TNFRSF18              0.529   tumor necrosis factor receptor superfamily, member 1...
TNFRSF9               0.045   tumor necrosis factor receptor superfamily, member 9 ...
TNFRSF4               0.043   tumor necrosis factor receptor superfamily, member 4 ...
LOC442676             0.042   PREDICTED: hypothetical protein LOC442676 
LOC442676             0.042   PREDICTED: hypothetical protein LOC442676 
LOC442676             0.042   PREDICTED: hypothetical protein LOC442676 
LOC442676             0.042   PREDICTED: hypothetical protein LOC442676 
SSPO                  0.036   SCO-spondin 
LAMB2                 0.036   laminin, beta 2 precursor 
LOC100291634          0.034   PREDICTED: hypothetical protein XP_002346062 
LOC100291096          0.034   PREDICTED: hypothetical protein XP_002346952 
LOC100287232          0.034   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.034   PREDICTED: hypothetical protein 
CD40                  0.031   CD40 antigen isoform 1 precursor 
LOC643355             0.031   PREDICTED: hypothetical protein 
TNFRSF21              0.029   tumor necrosis factor receptor superfamily, member 21...
CD40                  0.027   CD40 antigen isoform 2 precursor 
CIC                   0.025   capicua homolog 
TNFRSF6B              0.025   tumor necrosis factor receptor superfamily, member 6...
TNFRSF11A             0.025   tumor necrosis factor receptor superfamily, member 11...
TNFRSF6B              0.025   tumor necrosis factor receptor superfamily, member 6b...
LOC100291136          0.025   PREDICTED: hypothetical protein XP_002347630 
LOC100287129          0.025   PREDICTED: hypothetical protein XP_002343480 
TAF4                  0.025   TBP-associated factor 4 
RP1L1                 0.025   retinitis pigmentosa 1-like 1 
TNFRSF14              0.025   tumor necrosis factor receptor superfamily, member 1...
LOC284297             0.024   hypothetical protein LOC284297 
XKR6                  0.024   XK, Kell blood group complex subunit-related family,...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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