Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CD27 Sequence: fasta or formatted (260aa) NCBI GI: 4507587
Description:

tumor necrosis factor receptor superfamily, member 7 precursor

Referenced in:

TNF and Related Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         19           2
 C cysteine            8.1         21           2
 D aspartate           3.5          9           1
 E glutamate           6.2         16           3
 F phenylalanine       3.1          8           1
 G glycine             4.6         12           1
 H histidine           4.6         12           2
 I isoleucine          2.7          7           1
 K lysine              3.1          8           1
 L leucine             8.5         22           2
 M methionine          1.9          5           1
 N asparagine          2.3          6           1
 P proline            10.8         28           2
 Q glutamine           4.6         12           1
 R arginine            7.7         20           2
 S serine              8.1         21           2
 T threonine           5.8         15           1
 V valine              3.5          9           1
 W tryptophan          1.9          5           2
 Y tyrosine            1.9          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor necrosis factor receptor superfamily, member 7 ... 
CD40                  0.080   CD40 antigen isoform 1 precursor 
FAS                   0.073   tumor necrosis factor receptor superfamily, member 6...
FAS                   0.073   tumor necrosis factor receptor superfamily, member 6...
FAS                   0.073   tumor necrosis factor receptor superfamily, member 6 ...
CD40                  0.069   CD40 antigen isoform 2 precursor 
TNFRSF4               0.053   tumor necrosis factor receptor superfamily, member 4 ...
TNFRSF9               0.053   tumor necrosis factor receptor superfamily, member 9 ...
TNFRSF1A              0.053   tumor necrosis factor receptor 1 precursor 
LTBR                  0.053   lymphotoxin beta receptor 
TNFRSF14              0.053   tumor necrosis factor receptor superfamily, member 1...
TNFRSF25              0.053   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.053   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.053   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.053   tumor necrosis factor receptor superfamily, member 25...
TNFRSF6B              0.049   tumor necrosis factor receptor superfamily, member 6...
TNFRSF6B              0.049   tumor necrosis factor receptor superfamily, member 6b...
NGFR                  0.049   nerve growth factor receptor precursor 
TNFRSF1B              0.046   tumor necrosis factor receptor 2 precursor 
EDA2R                 0.044   X-linked ectodysplasin receptor 
TNFRSF11A             0.040   tumor necrosis factor receptor superfamily, member 11...
TNFRSF11B             0.029   osteoprotegerin precursor 
LAMA5                 0.027   laminin alpha 5 
TNFRSF10C             0.027   tumor necrosis factor receptor superfamily, member 1...
TNFRSF10D             0.026   tumor necrosis factor receptor superfamily, member 1...
MEGF11                0.026   multiple EGF-like-domains 11 
THBD                  0.024   thrombomodulin precursor 
TNFRSF8               0.024   tumor necrosis factor receptor superfamily, member 8...
MEGF6                 0.022   EGF-like-domain, multiple 3 
DLL4                  0.022   delta-like 4 protein precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press