Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LTBP2 Sequence: fasta or formatted (1821aa) NCBI GI: 4557733
Description:

latent transforming growth factor beta binding protein 2

Referenced in:

Extracellular Matrix
TGF-beta Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4        134           5
 C cysteine            8.8        160           3
 D aspartate           4.9         90           2
 E glutamate           7.1        130           4
 F phenylalanine       2.2         40           2
 G glycine            10.2        185           2
 H histidine           2.6         48           2
 I isoleucine          2.3         41           1
 K lysine              1.9         35           2
 L leucine             6.4        117           2
 M methionine          0.9         16           1
 N asparagine          3.7         68           2
 P proline             9.4        171           3
 Q glutamine           4.8         87           3
 R arginine            5.9        108           2
 S serine              7.2        131           2
 T threonine           5.9        107           3
 V valine              4.8         88           2
 W tryptophan          1.0         19           1
 Y tyrosine            2.5         46           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   latent transforming growth factor beta binding protei... 
LTBP1                 0.304   latent transforming growth factor beta binding prote...
LTBP4                 0.281   latent transforming growth factor beta binding prot...
LTBP1                 0.278   latent transforming growth factor beta binding prote...
LTBP4                 0.275   latent transforming growth factor beta binding prot...
LTBP4                 0.275   latent transforming growth factor beta binding prot...
LTBP3                 0.186   latent transforming growth factor beta binding prot...
LTBP3                 0.169   latent transforming growth factor beta binding prote...
FBN1                  0.122   fibrillin 1 precursor 
FBN2                  0.119   fibrillin 2 precursor 
FBN3                  0.116   fibrillin 3 precursor 
NOTCH3                0.064   Notch homolog 3 
FBLN2                 0.064   fibulin 2 isoform a precursor 
NOTCH1                0.060   notch1 preproprotein 
NOTCH2                0.059   notch 2 preproprotein 
FBLN2                 0.058   fibulin 2 isoform b precursor 
NOTCH4                0.056   notch4 preproprotein 
FBLN1                 0.051   fibulin 1 isoform C precursor 
FBLN1                 0.051   fibulin 1 isoform B precursor 
FBLN1                 0.051   fibulin 1 isoform A precursor 
FBLN1                 0.051   fibulin 1 isoform D 
HMCN1                 0.050   hemicentin 1 
MATN2                 0.049   matrilin 2 isoform b precursor 
MATN2                 0.049   matrilin 2 isoform a precursor 
MEGF6                 0.044   EGF-like-domain, multiple 3 
JAG2                  0.043   jagged 2 isoform a precursor 
JAG2                  0.042   jagged 2 isoform b precursor 
SCUBE3                0.042   signal peptide, CUB domain, EGF-like 3 
SCUBE1                0.042   signal peptide, CUB domain, EGF-like 1 
JAG1                  0.041   jagged 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press