Guide to the Human Genome
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Name: TNFRSF25 Sequence: fasta or formatted (181aa) NCBI GI: 89142745
Description:

tumor necrosis factor receptor superfamily, member 25 isoform 12 precursor

Referenced in:

TNF and Related Signals

Other entries for this name:
alt prot [426aa] tumor necrosis factor receptor superfamily, member 25 isoform 1 p...
alt prot [380aa] tumor necrosis factor receptor superfamily, member 25 isoform 3 p...
alt prot [372aa] tumor necrosis factor receptor superfamily, member 25 isoform 4 p...
alt prot [234aa] tumor necrosis factor receptor superfamily, member 25 isoform 7 p...
alt prot [417aa] tumor necrosis factor receptor superfamily, member 25 isoform 2 p...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         18           3
 C cysteine           14.4         26           2
 D aspartate           5.0          9           1
 E glutamate           4.4          8           1
 F phenylalanine       3.3          6           1
 G glycine             8.8         16           2
 H histidine           3.9          7           2
 I isoleucine          0.6          1           1
 K lysine              2.2          4           2
 L leucine             8.3         15           3
 M methionine          0.6          1           1
 N asparagine          2.2          4           1
 P proline             6.1         11           1
 Q glutamine           5.0          9           1
 R arginine            6.6         12           2
 S serine              6.1         11           3
 T threonine           5.0          9           1
 V valine              5.0          9           1
 W tryptophan          1.1          2           1
 Y tyrosine            1.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor necrosis factor receptor superfamily, member 2... 
TNFRSF25              1.000   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              1.000   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              1.000   tumor necrosis factor receptor superfamily, member 25...
TNFRSF25              0.669   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.237   tumor necrosis factor receptor superfamily, member 2...
TNFRSF1A              0.135   tumor necrosis factor receptor 1 precursor 
TNFRSF14              0.109   tumor necrosis factor receptor superfamily, member 1...
FAS                   0.104   tumor necrosis factor receptor superfamily, member 6...
FAS                   0.104   tumor necrosis factor receptor superfamily, member 6...
FAS                   0.104   tumor necrosis factor receptor superfamily, member 6 ...
TNFRSF11A             0.089   tumor necrosis factor receptor superfamily, member 11...
CD27                  0.076   tumor necrosis factor receptor superfamily, member 7 ...
LTBR                  0.076   lymphotoxin beta receptor 
TNFRSF1B              0.062   tumor necrosis factor receptor 2 precursor 
CD40                  0.060   CD40 antigen isoform 1 precursor 
CD40                  0.060   CD40 antigen isoform 2 precursor 
TNFRSF21              0.057   tumor necrosis factor receptor superfamily, member 21...
TNFRSF11B             0.052   osteoprotegerin precursor 
TNFRSF19              0.052   tumor necrosis factor receptor superfamily, member 1...
TNFRSF19              0.052   tumor necrosis factor receptor superfamily, member 1...
MEGF11                0.044   multiple EGF-like-domains 11 
KIAA1324L             0.042   hypothetical protein LOC222223 isoform 2 
KIAA1324L             0.042   hypothetical protein LOC222223 isoform 1 
NGFR                  0.039   nerve growth factor receptor precursor 
LAMA5                 0.039   laminin alpha 5 
CELSR3                0.039   cadherin EGF LAG seven-pass G-type receptor 3 [Homo...
TNFRSF4               0.036   tumor necrosis factor receptor superfamily, member 4 ...
TNFRSF6B              0.036   tumor necrosis factor receptor superfamily, member 6...
TNFRSF6B              0.036   tumor necrosis factor receptor superfamily, member 6b...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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