Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TNFRSF25 Sequence: fasta or formatted (426aa) NCBI GI: 23200021
Description:

tumor necrosis factor receptor superfamily, member 25 isoform 1 precursor

Referenced in:

TNF and Related Signals

Other entries for this name:
alt prot [380aa] tumor necrosis factor receptor superfamily, member 25 isoform 3 p...
alt prot [372aa] tumor necrosis factor receptor superfamily, member 25 isoform 4 p...
alt prot [234aa] tumor necrosis factor receptor superfamily, member 25 isoform 7 p...
alt prot [417aa] tumor necrosis factor receptor superfamily, member 25 isoform 2 p...
alt prot [181aa] tumor necrosis factor receptor superfamily, member 25 isoform 12 ...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         46           3
 C cysteine            7.0         30           2
 D aspartate           4.2         18           1
 E glutamate           5.4         23           1
 F phenylalanine       2.1          9           1
 G glycine             8.5         36           2
 H histidine           2.6         11           2
 I isoleucine          0.9          4           1
 K lysine              1.9          8           2
 L leucine            10.6         45           3
 M methionine          1.6          7           2
 N asparagine          1.2          5           1
 P proline             9.2         39           3
 Q glutamine           5.4         23           3
 R arginine            6.3         27           2
 S serine              5.9         25           3
 T threonine           5.2         22           1
 V valine              6.8         29           2
 W tryptophan          2.3         10           1
 Y tyrosine            2.1          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor necrosis factor receptor superfamily, member 2... 
TNFRSF25              0.927   tumor necrosis factor receptor superfamily, member 25...
TNFRSF25              0.822   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.784   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.433   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.396   tumor necrosis factor receptor superfamily, member 2...
TNFRSF1A              0.118   tumor necrosis factor receptor 1 precursor 
TNFRSF14              0.048   tumor necrosis factor receptor superfamily, member 1...
FAS                   0.045   tumor necrosis factor receptor superfamily, member 6...
FAS                   0.045   tumor necrosis factor receptor superfamily, member 6...
FAS                   0.045   tumor necrosis factor receptor superfamily, member 6 ...
TNFRSF10B             0.044   tumor necrosis factor receptor superfamily, member ...
TNFRSF10B             0.039   tumor necrosis factor receptor superfamily, member ...
TNFRSF11A             0.038   tumor necrosis factor receptor superfamily, member 11...
CD27                  0.033   tumor necrosis factor receptor superfamily, member 7 ...
LTBR                  0.033   lymphotoxin beta receptor 
VWCE                  0.029   von Willebrand factor C and EGF domains 
TNFRSF19              0.029   tumor necrosis factor receptor superfamily, member 1...
TNFRSF19              0.029   tumor necrosis factor receptor superfamily, member 1...
TNFRSF1B              0.027   tumor necrosis factor receptor 2 precursor 
CD40                  0.026   CD40 antigen isoform 1 precursor 
CD40                  0.026   CD40 antigen isoform 2 precursor 
TNFRSF21              0.025   tumor necrosis factor receptor superfamily, member 21...
TNFRSF11B             0.023   osteoprotegerin precursor 
TNFRSF10A             0.021   tumor necrosis factor receptor superfamily, member 1...
MEGF11                0.019   multiple EGF-like-domains 11 
TNFRSF4               0.018   tumor necrosis factor receptor superfamily, member 4 ...
ANKRD11               0.018   ankyrin repeat domain 11 
TNFRSF6B              0.018   tumor necrosis factor receptor superfamily, member 6...
TNFRSF6B              0.018   tumor necrosis factor receptor superfamily, member 6b...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press