Guide to the Human Genome
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Name: TNFRSF9 Sequence: fasta or formatted (255aa) NCBI GI: 5730095
Description:

tumor necrosis factor receptor superfamily, member 9 precursor

Referenced in:

TNF and Related Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         11           1
 C cysteine            9.8         25           2
 D aspartate           4.3         11           1
 E glutamate           5.5         14           4
 F phenylalanine       6.3         16           2
 G glycine             8.2         21           2
 H histidine           0.8          2           1
 I isoleucine          2.7          7           2
 K lysine              5.1         13           2
 L leucine             8.2         21           3
 M methionine          1.2          3           1
 N asparagine          4.7         12           2
 P proline             7.1         18           2
 Q glutamine           4.7         12           1
 R arginine            6.3         16           1
 S serine              8.6         22           2
 T threonine           6.7         17           2
 V valine              4.3         11           2
 W tryptophan          0.4          1           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor necrosis factor receptor superfamily, member 9 ... 
TNFRSF21              0.118   tumor necrosis factor receptor superfamily, member 21...
TNFRSF11A             0.094   tumor necrosis factor receptor superfamily, member 11...
LTBR                  0.090   lymphotoxin beta receptor 
TNFRSF18              0.082   tumor necrosis factor receptor superfamily, member 1...
TNFRSF18              0.080   tumor necrosis factor receptor superfamily, member 18...
TNFRSF11B             0.080   osteoprotegerin precursor 
TNFRSF4               0.076   tumor necrosis factor receptor superfamily, member 4 ...
TNFRSF6B              0.074   tumor necrosis factor receptor superfamily, member 6...
TNFRSF6B              0.074   tumor necrosis factor receptor superfamily, member 6b...
TNFRSF1B              0.071   tumor necrosis factor receptor 2 precursor 
CD40                  0.069   CD40 antigen isoform 1 precursor 
TNFRSF14              0.065   tumor necrosis factor receptor superfamily, member 1...
CD27                  0.055   tumor necrosis factor receptor superfamily, member 7 ...
TNFRSF18              0.048   tumor necrosis factor receptor superfamily, member 1...
CD40                  0.044   CD40 antigen isoform 2 precursor 
NGFR                  0.038   nerve growth factor receptor precursor 
ZAN                   0.038   zonadhesin isoform 3 
ZAN                   0.038   zonadhesin isoform 6 
SCUBE3                0.036   signal peptide, CUB domain, EGF-like 3 
CELSR2                0.036   cadherin EGF LAG seven-pass G-type receptor 2 
LOC100131696          0.034   PREDICTED: keratin associated protein 
SCUBE2                0.032   CEGP1 protein 
LOC100131696          0.032   PREDICTED: keratin associated protein 
LOC100288060          0.032   PREDICTED: hypothetical protein XP_002343557 
PCSK5                 0.032   proprotein convertase subtilisin/kexin type 5 prepro...
SVEP1                 0.031   polydom 
LRP1                  0.029   low density lipoprotein-related protein 1 
TNFRSF8               0.029   tumor necrosis factor receptor superfamily, member 8...
HMCN1                 0.029   hemicentin 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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