Guide to the Human Genome
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Name: TNFRSF25 Sequence: fasta or formatted (417aa) NCBI GI: 4507569
Description:

tumor necrosis factor receptor superfamily, member 25 isoform 2 precursor

Referenced in:

TNF and Related Signals

Other entries for this name:
alt prot [426aa] tumor necrosis factor receptor superfamily, member 25 isoform 1 p...
alt prot [380aa] tumor necrosis factor receptor superfamily, member 25 isoform 3 p...
alt prot [372aa] tumor necrosis factor receptor superfamily, member 25 isoform 4 p...
alt prot [234aa] tumor necrosis factor receptor superfamily, member 25 isoform 7 p...
alt prot [181aa] tumor necrosis factor receptor superfamily, member 25 isoform 12 ...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         43           3
 C cysteine            7.9         33           2
 D aspartate           4.3         18           1
 E glutamate           5.8         24           1
 F phenylalanine       2.2          9           1
 G glycine             7.9         33           2
 H histidine           2.6         11           2
 I isoleucine          1.0          4           1
 K lysine              1.9          8           2
 L leucine            10.6         44           3
 M methionine          1.9          8           2
 N asparagine          1.2          5           1
 P proline             8.4         35           3
 Q glutamine           5.5         23           3
 R arginine            6.7         28           2
 S serine              5.8         24           3
 T threonine           5.5         23           1
 V valine              6.0         25           2
 W tryptophan          2.4         10           1
 Y tyrosine            2.2          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor necrosis factor receptor superfamily, member 25... 
TNFRSF25              0.941   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.887   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.855   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.439   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.402   tumor necrosis factor receptor superfamily, member 2...
TNFRSF1A              0.117   tumor necrosis factor receptor 1 precursor 
TNFRSF14              0.055   tumor necrosis factor receptor superfamily, member 1...
FAS                   0.046   tumor necrosis factor receptor superfamily, member 6...
FAS                   0.046   tumor necrosis factor receptor superfamily, member 6...
FAS                   0.046   tumor necrosis factor receptor superfamily, member 6 ...
TNFRSF10B             0.045   tumor necrosis factor receptor superfamily, member ...
TNFRSF11A             0.039   tumor necrosis factor receptor superfamily, member 11...
TNFRSF10B             0.037   tumor necrosis factor receptor superfamily, member ...
CD27                  0.033   tumor necrosis factor receptor superfamily, member 7 ...
LTBR                  0.033   lymphotoxin beta receptor 
CD40                  0.029   CD40 antigen isoform 1 precursor 
TNFRSF1B              0.027   tumor necrosis factor receptor 2 precursor 
CD40                  0.026   CD40 antigen isoform 2 precursor 
TNFRSF21              0.025   tumor necrosis factor receptor superfamily, member 21...
TNFRSF11B             0.023   osteoprotegerin precursor 
KIAA1324L             0.023   hypothetical protein LOC222223 isoform 2 
KIAA1324L             0.023   hypothetical protein LOC222223 isoform 1 
TNFRSF19              0.023   tumor necrosis factor receptor superfamily, member 1...
TNFRSF19              0.023   tumor necrosis factor receptor superfamily, member 1...
LAMC3                 0.022   laminin, gamma 3 precursor 
VWCE                  0.022   von Willebrand factor C and EGF domains 
MEGF11                0.021   multiple EGF-like-domains 11 
LOC100292811          0.019   PREDICTED: similar to proprotein convertase subtili...
LAMC1                 0.019   laminin, gamma 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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