Guide to the Human Genome
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Name: TNFRSF1B Sequence: fasta or formatted (461aa) NCBI GI: 4507577
Description:

tumor necrosis factor receptor 2 precursor

Referenced in:

TNF and Related Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         43           3
 C cysteine            6.1         28           2
 D aspartate           3.7         17           1
 E glutamate           5.2         24           2
 F phenylalanine       1.7          8           1
 G glycine             6.9         32           2
 H histidine           2.0          9           1
 I isoleucine          2.2         10           2
 K lysine              3.3         15           3
 L leucine             6.5         30           2
 M methionine          1.7          8           1
 N asparagine          2.0          9           1
 P proline             9.8         45           2
 Q glutamine           5.4         25           2
 R arginine            4.3         20           2
 S serine             12.6         58           6
 T threonine           8.5         39           2
 V valine              6.7         31           2
 W tryptophan          1.1          5           1
 Y tyrosine            1.1          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor necrosis factor receptor 2 precursor 
TNFRSF6B              0.112   tumor necrosis factor receptor superfamily, member 6...
TNFRSF6B              0.112   tumor necrosis factor receptor superfamily, member 6b...
TNFRSF11B             0.111   osteoprotegerin precursor 
TNFRSF21              0.102   tumor necrosis factor receptor superfamily, member 21...
LTBR                  0.099   lymphotoxin beta receptor 
CD40                  0.096   CD40 antigen isoform 1 precursor 
CD40                  0.089   CD40 antigen isoform 2 precursor 
TNFRSF11A             0.086   tumor necrosis factor receptor superfamily, member 11...
TNFRSF14              0.080   tumor necrosis factor receptor superfamily, member 1...
TNFRSF8               0.069   tumor necrosis factor receptor superfamily, member 8...
TNFRSF4               0.052   tumor necrosis factor receptor superfamily, member 4 ...
NGFR                  0.048   nerve growth factor receptor precursor 
TNFRSF9               0.040   tumor necrosis factor receptor superfamily, member 9 ...
TNFRSF1A              0.037   tumor necrosis factor receptor 1 precursor 
TNFRSF10C             0.033   tumor necrosis factor receptor superfamily, member 1...
TNFRSF10A             0.032   tumor necrosis factor receptor superfamily, member 1...
FAS                   0.032   tumor necrosis factor receptor superfamily, member 6...
FAS                   0.032   tumor necrosis factor receptor superfamily, member 6...
FAS                   0.032   tumor necrosis factor receptor superfamily, member 6 ...
TNFRSF10B             0.031   tumor necrosis factor receptor superfamily, member ...
TNFRSF10B             0.030   tumor necrosis factor receptor superfamily, member ...
CD27                  0.027   tumor necrosis factor receptor superfamily, member 7 ...
TNFRSF25              0.026   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.026   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.026   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.026   tumor necrosis factor receptor superfamily, member 25...
TNFRSF10D             0.026   tumor necrosis factor receptor superfamily, member 1...
TNRC18                0.025   trinucleotide repeat containing 18 
EDA2R                 0.025   X-linked ectodysplasin receptor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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