Guide to the Human Genome
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Name: TNFRSF4 Sequence: fasta or formatted (277aa) NCBI GI: 4507579
Description:

tumor necrosis factor receptor superfamily, member 4 precursor

Referenced in:

TNF and Related Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         22           2
 C cysteine            7.2         20           2
 D aspartate           4.7         13           1
 E glutamate           2.9          8           2
 F phenylalanine       1.1          3           1
 G glycine            10.1         28           3
 H histidine           2.2          6           1
 I isoleucine          2.2          6           1
 K lysine              2.9          8           1
 L leucine             9.7         27           4
 M methionine          0.7          2           1
 N asparagine          2.9          8           1
 P proline            11.6         32           2
 Q glutamine           5.1         14           1
 R arginine            7.6         21           2
 S serine              6.5         18           2
 T threonine           7.2         20           1
 V valine              5.1         14           2
 W tryptophan          1.1          3           1
 Y tyrosine            1.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor necrosis factor receptor superfamily, member 4 ... 
TNFRSF11A             0.112   tumor necrosis factor receptor superfamily, member 11...
TNFRSF6B              0.094   tumor necrosis factor receptor superfamily, member 6...
TNFRSF6B              0.094   tumor necrosis factor receptor superfamily, member 6b...
CD40                  0.091   CD40 antigen isoform 1 precursor 
NGFR                  0.087   nerve growth factor receptor precursor 
LTBR                  0.086   lymphotoxin beta receptor 
TNFRSF1B              0.084   tumor necrosis factor receptor 2 precursor 
TNFRSF14              0.079   tumor necrosis factor receptor superfamily, member 1...
TNFRSF9               0.070   tumor necrosis factor receptor superfamily, member 9 ...
CD40                  0.068   CD40 antigen isoform 2 precursor 
TNFRSF18              0.066   tumor necrosis factor receptor superfamily, member 18...
TNFRSF18              0.066   tumor necrosis factor receptor superfamily, member 1...
TNFRSF11B             0.063   osteoprotegerin precursor 
RELT                  0.056   RELT tumor necrosis factor receptor precursor 
RELT                  0.056   RELT tumor necrosis factor receptor precursor 
LAMB4                 0.054   laminin, beta 4 
TNFRSF10C             0.052   tumor necrosis factor receptor superfamily, member 1...
CD27                  0.051   tumor necrosis factor receptor superfamily, member 7 ...
TNFRSF21              0.044   tumor necrosis factor receptor superfamily, member 21...
LAMA1                 0.042   laminin, alpha 1 precursor 
TNFRSF18              0.042   tumor necrosis factor receptor superfamily, member 1...
LAMA2                 0.042   laminin alpha 2 subunit isoform b precursor 
LAMA2                 0.042   laminin alpha 2 subunit isoform a precursor 
TNFRSF1A              0.038   tumor necrosis factor receptor 1 precursor 
TNFRSF8               0.038   tumor necrosis factor receptor superfamily, member 8...
FAS                   0.038   tumor necrosis factor receptor superfamily, member 6...
FAS                   0.038   tumor necrosis factor receptor superfamily, member 6...
FAS                   0.038   tumor necrosis factor receptor superfamily, member 6 ...
TNFRSF10A             0.037   tumor necrosis factor receptor superfamily, member 1...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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