Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: NGFR Sequence: fasta or formatted (427aa) NCBI GI: 4505393
Description:

nerve growth factor receptor precursor

Referenced in:

Melanoma Antigen Family
Neurons
TNF and Related Signals
Viral Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         42           2
 C cysteine            6.6         28           2
 D aspartate           5.6         24           2
 E glutamate           7.7         33           2
 F phenylalanine       0.9          4           1
 G glycine             8.2         35           2
 H histidine           1.9          8           1
 I isoleucine          2.1          9           1
 K lysine              2.6         11           1
 L leucine             8.4         36           7
 M methionine          0.9          4           1
 N asparagine          2.3         10           1
 P proline             6.8         29           3
 Q glutamine           4.9         21           2
 R arginine            4.4         19           2
 S serine              8.4         36           2
 T threonine           7.7         33           2
 V valine              7.3         31           3
 W tryptophan          1.2          5           1
 Y tyrosine            2.1          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nerve growth factor receptor precursor 
TNFRSF4               0.058   tumor necrosis factor receptor superfamily, member 4 ...
TNFRSF11B             0.054   osteoprotegerin precursor 
TNFRSF14              0.054   tumor necrosis factor receptor superfamily, member 1...
TNFRSF1A              0.053   tumor necrosis factor receptor 1 precursor 
CD40                  0.052   CD40 antigen isoform 1 precursor 
TNFRSF1B              0.052   tumor necrosis factor receptor 2 precursor 
TNFRSF11A             0.045   tumor necrosis factor receptor superfamily, member 11...
CD40                  0.045   CD40 antigen isoform 2 precursor 
TNFRSF10C             0.045   tumor necrosis factor receptor superfamily, member 1...
TNFRSF6B              0.045   tumor necrosis factor receptor superfamily, member 6...
TNFRSF6B              0.045   tumor necrosis factor receptor superfamily, member 6b...
TNFRSF21              0.045   tumor necrosis factor receptor superfamily, member 21...
FAS                   0.035   tumor necrosis factor receptor superfamily, member 6...
FAS                   0.035   tumor necrosis factor receptor superfamily, member 6...
FAS                   0.035   tumor necrosis factor receptor superfamily, member 6 ...
TNFRSF10D             0.034   tumor necrosis factor receptor superfamily, member 1...
LTBR                  0.034   lymphotoxin beta receptor 
CD27                  0.031   tumor necrosis factor receptor superfamily, member 7 ...
LAMC3                 0.030   laminin, gamma 3 precursor 
TNFRSF10B             0.029   tumor necrosis factor receptor superfamily, member ...
LAMA4                 0.028   laminin, alpha 4 isoform 2 precursor 
LAMA4                 0.028   laminin, alpha 4 isoform 1 precursor 
LAMA4                 0.028   laminin, alpha 4 isoform 2 precursor 
TNFRSF10A             0.025   tumor necrosis factor receptor superfamily, member 1...
LAMA5                 0.025   laminin alpha 5 
TNFRSF10B             0.024   tumor necrosis factor receptor superfamily, member ...
TNFRSF9               0.023   tumor necrosis factor receptor superfamily, member 9 ...
FRAS1                 0.023   Fraser syndrome 1 
LAMA1                 0.022   laminin, alpha 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press