Guide to the Human Genome
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Name: CD40 Sequence: fasta or formatted (203aa) NCBI GI: 23312371
Description:

CD40 antigen isoform 2 precursor

Referenced in:

TNF and Related Signals

Other entries for this name:
alt prot [277aa] CD40 antigen isoform 1 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.9          8           1
 C cysteine           10.3         21           2
 D aspartate           3.4          7           1
 E glutamate           8.4         17           2
 F phenylalanine       3.0          6           2
 G glycine             8.4         17           2
 H histidine           4.9         10           2
 I isoleucine          2.0          4           1
 K lysine              3.4          7           1
 L leucine             7.9         16           2
 M methionine          0.5          1           1
 N asparagine          2.5          5           1
 P proline             7.9         16           2
 Q glutamine           5.9         12           2
 R arginine            3.4          7           1
 S serine              7.9         16           2
 T threonine           7.4         15           1
 V valine              5.4         11           1
 W tryptophan          2.0          4           1
 Y tyrosine            1.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CD40 antigen isoform 2 precursor 
CD40                  0.807   CD40 antigen isoform 1 precursor 
TNFRSF11A             0.256   tumor necrosis factor receptor superfamily, member 11...
TNFRSF1B              0.193   tumor necrosis factor receptor 2 precursor 
LTBR                  0.172   lymphotoxin beta receptor 
TNFRSF14              0.172   tumor necrosis factor receptor superfamily, member 1...
TNFRSF11B             0.156   osteoprotegerin precursor 
TNFRSF6B              0.112   tumor necrosis factor receptor superfamily, member 6...
TNFRSF6B              0.112   tumor necrosis factor receptor superfamily, member 6b...
NGFR                  0.091   nerve growth factor receptor precursor 
TNFRSF4               0.091   tumor necrosis factor receptor superfamily, member 4 ...
FAS                   0.088   tumor necrosis factor receptor superfamily, member 6...
FAS                   0.088   tumor necrosis factor receptor superfamily, member 6...
FAS                   0.088   tumor necrosis factor receptor superfamily, member 6 ...
CD27                  0.088   tumor necrosis factor receptor superfamily, member 7 ...
TNFRSF21              0.067   tumor necrosis factor receptor superfamily, member 21...
TNFRSF1A              0.058   tumor necrosis factor receptor 1 precursor 
TNFRSF8               0.053   tumor necrosis factor receptor superfamily, member 8...
TNFRSF9               0.053   tumor necrosis factor receptor superfamily, member 9 ...
TNFRSF25              0.053   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.053   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.053   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.053   tumor necrosis factor receptor superfamily, member 25...
KIAA1324              0.042   hypothetical protein LOC57535 
LAMC3                 0.040   laminin, gamma 3 precursor 
VWDE                  0.035   von Willebrand factor D and EGF domains 
TNFRSF18              0.035   tumor necrosis factor receptor superfamily, member 1...
MEGF11                0.035   multiple EGF-like-domains 11 
DLL1                  0.033   delta-like 1 
TNFRSF18              0.033   tumor necrosis factor receptor superfamily, member 18...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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