Guide to the Human Genome
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Name: TNFRSF6B Sequence: fasta or formatted (300aa) NCBI GI: 4507585
Description:

tumor necrosis factor receptor superfamily, member 6b

Referenced in:

TNF and Related Signals

Other entries for this name:
alt mRNA [300aa] tumor necrosis factor receptor superfamily, member 6b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         31           2
 C cysteine            7.0         21           1
 D aspartate           2.0          6           1
 E glutamate           6.3         19           3
 F phenylalanine       3.3         10           2
 G glycine             7.7         23           1
 H histidine           2.7          8           1
 I isoleucine          1.3          4           1
 K lysine              0.7          2           1
 L leucine            11.7         35           2
 M methionine          0.7          2           1
 N asparagine          2.0          6           1
 P proline             9.7         29           2
 Q glutamine           4.7         14           1
 R arginine           10.3         31           3
 S serine              5.7         17           5
 T threonine           6.3         19           2
 V valine              5.3         16           1
 W tryptophan          1.0          3           1
 Y tyrosine            1.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor necrosis factor receptor superfamily, member 6b... 
TNFRSF6B              1.000   tumor necrosis factor receptor superfamily, member 6...
TNFRSF11B             0.241   osteoprotegerin precursor 
TNFRSF1B              0.171   tumor necrosis factor receptor 2 precursor 
TNFRSF21              0.148   tumor necrosis factor receptor superfamily, member 21...
LTBR                  0.148   lymphotoxin beta receptor 
TNFRSF14              0.115   tumor necrosis factor receptor superfamily, member 1...
TNFRSF11A             0.110   tumor necrosis factor receptor superfamily, member 11...
CD40                  0.095   CD40 antigen isoform 1 precursor 
TNFRSF4               0.089   tumor necrosis factor receptor superfamily, member 4 ...
CD40                  0.079   CD40 antigen isoform 2 precursor 
TNFRSF8               0.072   tumor necrosis factor receptor superfamily, member 8...
TNFRSF9               0.064   tumor necrosis factor receptor superfamily, member 9 ...
NGFR                  0.064   nerve growth factor receptor precursor 
RELT                  0.054   RELT tumor necrosis factor receptor precursor 
RELT                  0.054   RELT tumor necrosis factor receptor precursor 
TNFRSF18              0.048   tumor necrosis factor receptor superfamily, member 18...
TNFRSF18              0.048   tumor necrosis factor receptor superfamily, member 1...
FAS                   0.046   tumor necrosis factor receptor superfamily, member 6...
FAS                   0.046   tumor necrosis factor receptor superfamily, member 6...
FAS                   0.046   tumor necrosis factor receptor superfamily, member 6 ...
CD27                  0.044   tumor necrosis factor receptor superfamily, member 7 ...
TNFRSF10A             0.043   tumor necrosis factor receptor superfamily, member 1...
TNFRSF1A              0.031   tumor necrosis factor receptor 1 precursor 
RSPO1                 0.030   R-spondin1 
EDA2R                 0.030   X-linked ectodysplasin receptor 
MEGF11                0.028   multiple EGF-like-domains 11 
NOTCH3                0.028   Notch homolog 3 
LOC100293676          0.026   PREDICTED: similar to Fc fragment of IgG binding pr...
LOC100290309          0.026   PREDICTED: hypothetical protein XP_002348012 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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