SHANK1 2432

Name: SHANK1	Sequence: fasta or formatted (2161aa)		NCBI GI: 120587025
Description: SH3 and multiple ankyrin repeat domains 1		Referenced in: Ankyrin Family Growth Hormone and Related Hormones Synapses Non-Receptor Tyrosine Kinase Pathways
Composition: Amino acid Percentage Count Longest homopolymer A alanine 9.4 204 4 C cysteine 0.6 14 2 D aspartate 3.8 83 2 E glutamate 5.4 116 3 F phenylalanine 2.7 58 2 G glycine 11.8 255 7 H histidine 3.0 65 6 I isoleucine 1.9 40 3 K lysine 3.3 72 2 L leucine 8.9 192 3 M methionine 1.3 28 2 N asparagine 1.4 31 3 P proline 14.3 310 5 Q glutamine 3.5 75 2 R arginine 6.1 132 3 S serine 10.9 235 4 T threonine 4.9 105 2 V valine 4.2 91 2 W tryptophan 0.7 16 1 Y tyrosine 1.8 39 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 SH3 and multiple ankyrin repeat domains 1 SHANK2 0.279 SH3 and multiple ankyrin repeat domains 2 isoform 1... SHANK3 0.198 SH3 and multiple ankyrin repeat domains 3 LOC100133890 0.101 PREDICTED: similar to Shank2E SHANK2 0.047 SH3 and multiple ankyrin repeat domains 2 isoform 2 ... NACA 0.028 nascent polypeptide-associated complex alpha subuni... FLJ22184 0.027 PREDICTED: hypothetical protein FLJ22184 PRR12 0.027 proline rich 12 FLJ22184 0.024 PREDICTED: hypothetical protein FLJ22184 FLJ22184 0.023 PREDICTED: hypothetical protein LOC80164 COL3A1 0.023 collagen type III alpha 1 preproprotein COL1A1 0.022 alpha 1 type I collagen preproprotein KDM6B 0.022 lysine (K)-specific demethylase 6B WIPF1 0.021 WAS/WASL interacting protein family, member 1 [Homo... WIPF1 0.021 WAS/WASL interacting protein family, member 1 COL2A1 0.019 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.019 collagen, type II, alpha 1 isoform 2 precursor [Hom... FMN2 0.019 formin 2 ANKK1 0.017 ankyrin repeat and kinase domain containing 1 KIAA1522 0.016 hypothetical protein LOC57648 RAPH1 0.016 Ras association and pleckstrin homology domains 1 is... PRB3 0.016 proline-rich protein BstNI subfamily 3 precursor [H... PRB2 0.016 proline-rich protein BstNI subfamily 2 TAF4 0.016 TBP-associated factor 4 ANKRD28 0.016 ankyrin repeat domain 28 COL5A1 0.016 alpha 1 type V collagen preproprotein ANK2 0.016 ankyrin 2 isoform 3 ANK2 0.016 ankyrin 2 isoform 2 ANK2 0.016 ankyrin 2 isoform 1 ANK3 0.016 ankyrin 3 isoform 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.