Guide to the Human Genome
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Name: TNFRSF1A Sequence: fasta or formatted (455aa) NCBI GI: 4507575
Description:

tumor necrosis factor receptor 1 precursor

Referenced in:

Additional Interaction Domain Families
TNF and Related Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         20           2
 C cysteine            6.6         30           2
 D aspartate           4.6         21           2
 E glutamate           6.6         30           2
 F phenylalanine       3.1         14           2
 G glycine             6.6         30           1
 H histidine           2.2         10           1
 I isoleucine          2.9         13           1
 K lysine              4.4         20           2
 L leucine            12.7         58           3
 M methionine          1.1          5           1
 N asparagine          3.7         17           2
 P proline             8.1         37           2
 Q glutamine           3.3         15           1
 R arginine            5.9         27           3
 S serine              7.9         36           3
 T threonine           6.8         31           3
 V valine              5.1         23           2
 W tryptophan          1.1          5           1
 Y tyrosine            2.9         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor necrosis factor receptor 1 precursor 
TNFRSF25              0.112   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.109   tumor necrosis factor receptor superfamily, member 25...
TNFRSF25              0.084   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.076   tumor necrosis factor receptor superfamily, member 2...
LTBR                  0.059   lymphotoxin beta receptor 
TNFRSF25              0.055   tumor necrosis factor receptor superfamily, member 2...
NGFR                  0.049   nerve growth factor receptor precursor 
TNFRSF25              0.049   tumor necrosis factor receptor superfamily, member 2...
TNFRSF11B             0.037   osteoprotegerin precursor 
TNFRSF10B             0.036   tumor necrosis factor receptor superfamily, member ...
TNFRSF1B              0.036   tumor necrosis factor receptor 2 precursor 
TNFRSF10B             0.032   tumor necrosis factor receptor superfamily, member ...
CD40                  0.031   CD40 antigen isoform 1 precursor 
TNFRSF10C             0.031   tumor necrosis factor receptor superfamily, member 1...
CD27                  0.031   tumor necrosis factor receptor superfamily, member 7 ...
TNFRSF10D             0.031   tumor necrosis factor receptor superfamily, member 1...
TNFRSF14              0.030   tumor necrosis factor receptor superfamily, member 1...
CD40                  0.027   CD40 antigen isoform 2 precursor 
TNFRSF11A             0.027   tumor necrosis factor receptor superfamily, member 11...
FAS                   0.026   tumor necrosis factor receptor superfamily, member 6...
FAS                   0.026   tumor necrosis factor receptor superfamily, member 6 ...
TNFRSF8               0.026   tumor necrosis factor receptor superfamily, member 8...
TNFRSF10A             0.025   tumor necrosis factor receptor superfamily, member 1...
EDA2R                 0.025   X-linked ectodysplasin receptor 
FAS                   0.025   tumor necrosis factor receptor superfamily, member 6...
TNFRSF4               0.023   tumor necrosis factor receptor superfamily, member 4 ...
SVEP1                 0.022   polydom 
TNFRSF6B              0.020   tumor necrosis factor receptor superfamily, member 6...
TNFRSF6B              0.020   tumor necrosis factor receptor superfamily, member 6b...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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