Guide to the Human Genome
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Name: TNFRSF11B Sequence: fasta or formatted (401aa) NCBI GI: 148743793
Description:

osteoprotegerin precursor

Referenced in:

Bone and Related Tissues
TNF and Related Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.2         13           1
 C cysteine            6.2         25           2
 D aspartate           4.5         18           1
 E glutamate           6.0         24           2
 F phenylalanine       4.2         17           2
 G glycine             4.2         17           1
 H histidine           4.2         17           1
 I isoleucine          4.5         18           2
 K lysine              9.7         39           2
 L leucine            10.0         40           3
 M methionine          1.2          5           1
 N asparagine          4.5         18           2
 P proline             4.5         18           2
 Q glutamine           5.7         23           1
 R arginine            3.5         14           1
 S serine              6.7         27           2
 T threonine           7.5         30           2
 V valine              5.2         21           2
 W tryptophan          1.5          6           1
 Y tyrosine            2.7         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   osteoprotegerin precursor 
TNFRSF6B              0.178   tumor necrosis factor receptor superfamily, member 6...
TNFRSF6B              0.178   tumor necrosis factor receptor superfamily, member 6b...
TNFRSF1B              0.125   tumor necrosis factor receptor 2 precursor 
TNFRSF21              0.109   tumor necrosis factor receptor superfamily, member 21...
CD40                  0.094   CD40 antigen isoform 1 precursor 
TNFRSF11A             0.094   tumor necrosis factor receptor superfamily, member 11...
LTBR                  0.083   lymphotoxin beta receptor 
CD40                  0.081   CD40 antigen isoform 2 precursor 
TNFRSF14              0.067   tumor necrosis factor receptor superfamily, member 1...
NGFR                  0.057   nerve growth factor receptor precursor 
TNFRSF9               0.051   tumor necrosis factor receptor superfamily, member 9 ...
TNFRSF8               0.044   tumor necrosis factor receptor superfamily, member 8...
TNFRSF4               0.044   tumor necrosis factor receptor superfamily, member 4 ...
TNFRSF1A              0.042   tumor necrosis factor receptor 1 precursor 
FAS                   0.041   tumor necrosis factor receptor superfamily, member 6 ...
TNFRSF10C             0.040   tumor necrosis factor receptor superfamily, member 1...
FAS                   0.039   tumor necrosis factor receptor superfamily, member 6...
TNFRSF10D             0.039   tumor necrosis factor receptor superfamily, member 1...
TNFRSF10A             0.034   tumor necrosis factor receptor superfamily, member 1...
TNFRSF18              0.030   tumor necrosis factor receptor superfamily, member 18...
TNFRSF18              0.030   tumor necrosis factor receptor superfamily, member 1...
TNFRSF10B             0.027   tumor necrosis factor receptor superfamily, member ...
RELT                  0.027   RELT tumor necrosis factor receptor precursor 
RELT                  0.027   RELT tumor necrosis factor receptor precursor 
TNFRSF25              0.024   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.024   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.024   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.024   tumor necrosis factor receptor superfamily, member 25...
TNFRSF10B             0.023   tumor necrosis factor receptor superfamily, member ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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