Guide to the Human Genome
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Name: TNFRSF18 Sequence: fasta or formatted (241aa) NCBI GI: 4759246
Description:

tumor necrosis factor receptor superfamily, member 18 isoform 1 precursor

Referenced in:

TNF and Related Signals

Other entries for this name:
alt prot [255aa] tumor necrosis factor receptor superfamily, member 18 isoform 2 p...
alt prot [234aa] tumor necrosis factor receptor superfamily, member 18 isoform 3 p...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         16           2
 C cysteine           10.0         24           2
 D aspartate           3.3          8           1
 E glutamate           6.2         15           3
 F phenylalanine       4.1         10           1
 G glycine            12.0         29           2
 H histidine           3.7          9           2
 I isoleucine          0.8          2           1
 K lysine              1.7          4           1
 L leucine            10.4         25           3
 M methionine          1.7          4           1
 N asparagine          0.8          2           1
 P proline             7.9         19           2
 Q glutamine           5.4         13           1
 R arginine            5.8         14           1
 S serine              5.0         12           1
 T threonine           6.6         16           2
 V valine              5.0         12           2
 W tryptophan          2.5          6           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor necrosis factor receptor superfamily, member 18... 
TNFRSF18              0.949   tumor necrosis factor receptor superfamily, member 1...
TNFRSF18              0.569   tumor necrosis factor receptor superfamily, member 1...
TNFRSF9               0.082   tumor necrosis factor receptor superfamily, member 9 ...
TNFRSF4               0.074   tumor necrosis factor receptor superfamily, member 4 ...
TNFRSF6B              0.057   tumor necrosis factor receptor superfamily, member 6...
TNFRSF6B              0.057   tumor necrosis factor receptor superfamily, member 6b...
TNFRSF11A             0.053   tumor necrosis factor receptor superfamily, member 11...
TNFRSF11B             0.049   osteoprotegerin precursor 
TNFRSF21              0.049   tumor necrosis factor receptor superfamily, member 21...
CD40                  0.041   CD40 antigen isoform 1 precursor 
TNFRSF1B              0.039   tumor necrosis factor receptor 2 precursor 
LTBR                  0.037   lymphotoxin beta receptor 
CD40                  0.027   CD40 antigen isoform 2 precursor 
FBN2                  0.023   fibrillin 2 precursor 
LOC728318             0.023   PREDICTED: hypothetical protein 
LOC728318             0.023   PREDICTED: hypothetical protein 
LOC728318             0.023   PREDICTED: hypothetical protein 
LAMB2                 0.021   laminin, beta 2 precursor 
KRTAP5-1              0.021   keratin associated protein 5-1 
KRTAP5-4              0.019   keratin associated protein 5-4 
PEAR1                 0.019   platelet endothelial aggregation receptor 1 
TNFRSF14              0.019   tumor necrosis factor receptor superfamily, member 1...
EGFR                  0.018   epidermal growth factor receptor isoform a precursor...
EGFR                  0.018   epidermal growth factor receptor isoform d precursor...
EGFR                  0.018   epidermal growth factor receptor isoform c precursor...
EGFR                  0.018   epidermal growth factor receptor isoform b precursor...
VLDLR                 0.018   very low density lipoprotein receptor isoform b [Hom...
VLDLR                 0.018   very low density lipoprotein receptor isoform a [Hom...
EDAR                  0.018   ectodysplasin A receptor precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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