Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 122056619
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|122056619 LIM domain binding 3 isoform 4 [Homo sapiens]
(283 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|122056619 LIM domain binding 3 isoform 4 [Homo sapiens] 561 e-160
gi|122056614 LIM domain binding 3 isoform 2 [Homo sapiens] 498 e-141
gi|122056617 LIM domain binding 3 isoform 3 [Homo sapiens] 411 e-115
gi|45592959 LIM domain binding 3 isoform 1 [Homo sapiens] 346 1e-95
gi|47157328 PDZ and LIM domain 7 isoform 4 [Homo sapiens] 176 2e-44
gi|58533159 PDZ and LIM domain 5 isoform d [Homo sapiens] 164 6e-41
gi|197383077 PDZ and LIM domain 5 isoform a [Homo sapiens] 141 6e-34
gi|11496885 PDZ and LIM domain 7 isoform 1 [Homo sapiens] 141 6e-34
gi|166235176 PDZ and LIM domain protein 3 isoform a [Homo sapiens] 131 6e-31
gi|197383100 PDZ and LIM domain 5 isoform b [Homo sapiens] 131 6e-31
gi|13994151 PDZ and LIM domain 1 [Homo sapiens] 128 5e-30
gi|166235178 PDZ and LIM domain protein 3 isoform b [Homo sapiens] 122 3e-28
gi|58533161 PDZ and LIM domain 5 isoform e [Homo sapiens] 117 1e-26
gi|42741675 PDZ and LIM domain 7 isoform 2 [Homo sapiens] 114 1e-25
gi|196162711 PDZ and LIM domain 4 isoform 2 [Homo sapiens] 100 1e-21
gi|19923181 PDZ and LIM domain 4 isoform 1 [Homo sapiens] 100 1e-21
gi|38327612 PDZ and LIM domain 2 isoform 3 [Homo sapiens] 81 9e-16
gi|28866957 PDZ and LIM domain 2 isoform 1 [Homo sapiens] 81 9e-16
gi|21361888 PDZ and LIM domain 2 isoform 2 [Homo sapiens] 81 9e-16
gi|166706868 synaptopodin 2-like isoform a [Homo sapiens] 69 5e-12
gi|193083191 synaptopodin 2 isoform c [Homo sapiens] 62 6e-10
gi|193083185 synaptopodin 2 isoform b [Homo sapiens] 62 6e-10
gi|193083183 synaptopodin 2 isoform a [Homo sapiens] 62 6e-10
gi|118600967 shroom family member 4 [Homo sapiens] 50 3e-06
gi|11321640 basic beta 1 syntrophin [Homo sapiens] 50 3e-06
gi|4502175 apical protein of Xenopus-like [Homo sapiens] 50 3e-06
gi|27436957 membrane associated guanylate kinase, WW and PDZ dom... 49 4e-06
gi|13376349 PDZ domain containing 7 [Homo sapiens] 49 6e-06
gi|155969695 membrane-associated guanylate kinase-related 3 iso... 49 6e-06
gi|11545920 lin-7 homolog B [Homo sapiens] 48 8e-06
>gi|122056619 LIM domain binding 3 isoform 4 [Homo sapiens]
Length = 283
Score = 561 bits (1446), Expect = e-160
Identities = 283/283 (100%), Positives = 283/283 (100%)
Query: 1 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM
Sbjct: 1 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
Query: 61 THLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPHQKVVVNSPANADYQE 120
THLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPHQKVVVNSPANADYQE
Sbjct: 61 THLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPHQKVVVNSPANADYQE 120
Query: 121 RFNPSALKDSALSTHKPIEVKGLGGKATIIHAQYNTPISMYSQDAIMDAIAGQAQAQGSD 180
RFNPSALKDSALSTHKPIEVKGLGGKATIIHAQYNTPISMYSQDAIMDAIAGQAQAQGSD
Sbjct: 121 RFNPSALKDSALSTHKPIEVKGLGGKATIIHAQYNTPISMYSQDAIMDAIAGQAQAQGSD 180
Query: 181 FSGSLPIKDLAVDSASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQMTGTEFM 240
FSGSLPIKDLAVDSASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQMTGTEFM
Sbjct: 181 FSGSLPIKDLAVDSASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQMTGTEFM 240
Query: 241 QDPDEEALRRSRERFETERNSPRFAKLRNWHHGLSAQILNVKS 283
QDPDEEALRRSRERFETERNSPRFAKLRNWHHGLSAQILNVKS
Sbjct: 241 QDPDEEALRRSRERFETERNSPRFAKLRNWHHGLSAQILNVKS 283
>gi|122056614 LIM domain binding 3 isoform 2 [Homo sapiens]
Length = 617
Score = 498 bits (1281), Expect = e-141
Identities = 252/252 (100%), Positives = 252/252 (100%)
Query: 1 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM
Sbjct: 1 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
Query: 61 THLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPHQKVVVNSPANADYQE 120
THLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPHQKVVVNSPANADYQE
Sbjct: 61 THLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPHQKVVVNSPANADYQE 120
Query: 121 RFNPSALKDSALSTHKPIEVKGLGGKATIIHAQYNTPISMYSQDAIMDAIAGQAQAQGSD 180
RFNPSALKDSALSTHKPIEVKGLGGKATIIHAQYNTPISMYSQDAIMDAIAGQAQAQGSD
Sbjct: 121 RFNPSALKDSALSTHKPIEVKGLGGKATIIHAQYNTPISMYSQDAIMDAIAGQAQAQGSD 180
Query: 181 FSGSLPIKDLAVDSASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQMTGTEFM 240
FSGSLPIKDLAVDSASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQMTGTEFM
Sbjct: 181 FSGSLPIKDLAVDSASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQMTGTEFM 240
Query: 241 QDPDEEALRRSR 252
QDPDEEALRRSR
Sbjct: 241 QDPDEEALRRSR 252
>gi|122056617 LIM domain binding 3 isoform 3 [Homo sapiens]
Length = 330
Score = 411 bits (1057), Expect = e-115
Identities = 229/331 (69%), Positives = 244/331 (73%), Gaps = 49/331 (14%)
Query: 1 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM
Sbjct: 1 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
Query: 61 THLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPHQK------------- 107
THLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPHQK
Sbjct: 61 THLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPHQKDPALDTNGSLVAP 120
Query: 108 -------VVVNSPANADYQERFNPSALKDSALSTHKPIEVKG------------------ 142
+P + + F+P+ + SA S+ G
Sbjct: 121 SPSPEARASPGTPGTPELRPTFSPAFSRPSAFSSLAEASDPGPPRASLRAKTSPEGARDL 180
Query: 143 LGGKA---TIIHAQYNTPISMYSQDAIMD-------AIAGQAQAQGSDFSGSLPIKDLAV 192
LG KA + QYN PI +YS + + + ++ G+A G GSLPIKDLAV
Sbjct: 181 LGPKALPGSSQPRQYNNPIGLYSAETLREMAQMYQMSLRGKASGVGLP-GGSLPIKDLAV 239
Query: 193 DSASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQMTGTEFMQDPDEEALRRSR 252
DSASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQMTGTEFMQDPDEEALRRSR
Sbjct: 240 DSASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQMTGTEFMQDPDEEALRRSR 299
Query: 253 ERFETERNSPRFAKLRNWHHGLSAQILNVKS 283
ERFETERNSPRFAKLRNWHHGLSAQILNVKS
Sbjct: 300 ERFETERNSPRFAKLRNWHHGLSAQILNVKS 330
>gi|45592959 LIM domain binding 3 isoform 1 [Homo sapiens]
Length = 727
Score = 346 bits (888), Expect = 1e-95
Identities = 198/304 (65%), Positives = 213/304 (70%), Gaps = 49/304 (16%)
Query: 1 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM
Sbjct: 1 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
Query: 61 THLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPHQK------------- 107
THLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPHQK
Sbjct: 61 THLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPHQKDPALDTNGSLVAP 120
Query: 108 -------VVVNSPANADYQERFNPSALKDSALSTHKPIEVKG------------------ 142
+P + + F+P+ + SA S+ G
Sbjct: 121 SPSPEARASPGTPGTPELRPTFSPAFSRPSAFSSLAEASDPGPPRASLRAKTSPEGARDL 180
Query: 143 LGGKA---TIIHAQYNTPISMYSQDAIMD-------AIAGQAQAQGSDFSGSLPIKDLAV 192
LG KA + QYN PI +YS + + + ++ G+A G GSLPIKDLAV
Sbjct: 181 LGPKALPGSSQPRQYNNPIGLYSAETLREMAQMYQMSLRGKASGVGLP-GGSLPIKDLAV 239
Query: 193 DSASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQMTGTEFMQDPDEEALRRSR 252
DSASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQMTGTEFMQDPDEEALRRS
Sbjct: 240 DSASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQMTGTEFMQDPDEEALRRSS 299
Query: 253 ERFE 256
E
Sbjct: 300 TPIE 303
>gi|47157328 PDZ and LIM domain 7 isoform 4 [Homo sapiens]
Length = 222
Score = 176 bits (446), Expect = 2e-44
Identities = 108/282 (38%), Positives = 148/282 (52%), Gaps = 62/282 (21%)
Query: 2 SYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMT 61
S+ V L GP PWGFRLQGGKDFN+PL+ISR+TPG KAAQ+ ++ GD V++IDG N ++T
Sbjct: 3 SFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLT 62
Query: 62 HLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPHQKVVVNSPANADYQER 121
H+EAQNKI++ LSL L + A PVQ+ + ++PA +
Sbjct: 63 HIEAQNKIRACGERLSLGLSR----------AQPVQS-------KPQKASAPAADPPRYT 105
Query: 122 FNPSALKDSALSTHKPIEVKGLGGKATIIHAQYNTPISMYSQDAIMDAIAGQAQAQGSDF 181
F PS S T +P A +
Sbjct: 106 FAPSV---SLNKTARP--------------------------------FGAPPPADSAPQ 130
Query: 182 SGSLPIKDLAVDSASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQMTGTEFMQ 241
P++ L D+ S+ + + ++W R QSRSFRILA +TGTEFMQ
Sbjct: 131 QNGQPLRPLVPDA----------SKQRLMENTEDWRPRPGTGQSRSFRILAHLTGTEFMQ 180
Query: 242 DPDEEALRRSRERFETERNSPRFAKLRNWHHGLSAQILNVKS 283
DPDEE L++SRE++ E SPR+ +LR+WHH SA +LNV+S
Sbjct: 181 DPDEEHLKKSREKYVLELQSPRYTRLRDWHHQRSAHVLNVQS 222
>gi|58533159 PDZ and LIM domain 5 isoform d [Homo sapiens]
Length = 234
Score = 164 bits (416), Expect = 6e-41
Identities = 101/284 (35%), Positives = 149/284 (52%), Gaps = 55/284 (19%)
Query: 2 SYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMT 61
+YSV+L GP PWGFRLQGGKDFNMPLTIS + G KAAQ+ + GD+V++IDG+N MT
Sbjct: 3 NYSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMT 62
Query: 62 HLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPHQKVVVNSPANADYQER 121
HLEAQNKIK + +L++TLQ++ +A P P+PV QK V S + QE
Sbjct: 63 HLEAQNKIKGCTGSLNMTLQRA--------SAAPKPEPVPV---QKPTVTSVCSETSQEL 111
Query: 122 FNPSALKDSALSTHKPIEVKGLGGKATIIHAQYNTPISMYSQDAIMDAIAGQAQAQGSDF 181
E + G + G ++ Q
Sbjct: 112 ----------------AEGQRRGSQ-------------------------GDSKQQNGKI 130
Query: 182 SGSLPIKDLAVDSASPVYQAVIKSQNKPE---DEADEWARRSSNLQSRSFRILAQMTGTE 238
P + V+ + Y S + ++ ++W R+ QSRSFRILAQ+TGTE
Sbjct: 131 PPKRPPRKHIVERYTEFYHVPTHSDASKKRLIEDTEDWRPRTGTTQSRSFRILAQITGTE 190
Query: 239 FMQDPDEEALRRSRERFETERNSPRFAKLRNWHHGLSAQILNVK 282
+++ + + ++++E+ SP++ KLR+WHH +SA+ LNV+
Sbjct: 191 HLKESEADNTKKAKEKIPLHVFSPKYTKLRDWHHEVSARALNVQ 234
>gi|197383077 PDZ and LIM domain 5 isoform a [Homo sapiens]
Length = 596
Score = 141 bits (356), Expect = 6e-34
Identities = 95/318 (29%), Positives = 150/318 (47%), Gaps = 57/318 (17%)
Query: 2 SYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMT 61
+YSV+L GP PWGFRLQGGKDFNMPLTIS + G KAAQ+ + GD+V++IDG+N MT
Sbjct: 3 NYSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMT 62
Query: 62 HLEAQNKIKSASYNLSLTLQKSK-----RPIPISTTAP-PVQTPLPVIPHQKVVVNSPAN 115
HLEAQNKIK + +L++TLQ++ P+P+ P V P+P+ V S N
Sbjct: 63 HLEAQNKIKGCTGSLNMTLQRASAAPKPEPVPVQKGEPKEVVKPVPITSPAVSKVTSTNN 122
Query: 116 ADYQE---------------------RFNPSALKDSALSTHKPIEV-------------- 140
Y + F P+ S+ ++ P+
Sbjct: 123 MAYNKAPRPFGSVSSPKVTSIPSPSSAFTPAHATTSSHASPSPVAAVTPPLFAASGLHAN 182
Query: 141 ---------KGLGGKATIIHAQYNTPISMYSQDAIMDAIAGQAQ-AQGSDFSGSLPIKDL 190
L T ++ ++ + + GQ + +QG + P +
Sbjct: 183 ANLSADQSPSALSAGKTAVNVPRQPTVTSVCSETSQELAEGQRRGSQGDSKQQNGPPRKH 242
Query: 191 AVDSASPVYQAVIKSQNKPE---DEADEWARRSSNLQSRSFRILAQMTGTEFMQDPDEEA 247
V+ + Y S + ++ ++W R+ QSRSFRILAQ+TGTE +++ + +
Sbjct: 243 IVERYTEFYHVPTHSDASKKRLIEDTEDWRPRTGTTQSRSFRILAQITGTEHLKESEADN 302
Query: 248 LRRSRERFETERNSPRFA 265
+++ ++ SP+ A
Sbjct: 303 TKKAN---NSQEPSPQLA 317
>gi|11496885 PDZ and LIM domain 7 isoform 1 [Homo sapiens]
Length = 457
Score = 141 bits (356), Expect = 6e-34
Identities = 94/261 (36%), Positives = 129/261 (49%), Gaps = 62/261 (23%)
Query: 2 SYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMT 61
S+ V L GP PWGFRLQGGKDFN+PL+ISR+TPG KAAQ+ ++ GD V++IDG N ++T
Sbjct: 3 SFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLT 62
Query: 62 HLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPHQKVVVNSPANADYQER 121
H+EAQNKI++ LSL L + A PVQ+ + ++PA +
Sbjct: 63 HIEAQNKIRACGERLSLGLSR----------AQPVQS-------KPQKASAPAADPPRYT 105
Query: 122 FNPSALKDSALSTHKPIEVKGLGGKATIIHAQYNTPISMYSQDAIMDAIAGQAQAQGSDF 181
F PS S T +P A +
Sbjct: 106 FAPSV---SLNKTARP--------------------------------FGAPPPADSAPQ 130
Query: 182 SGSLPIKDLAVDSASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQMTGTEFMQ 241
P++ L D+ S+ + + ++W R QSRSFRILA +TGTEFMQ
Sbjct: 131 QNGQPLRPLVPDA----------SKQRLMENTEDWRPRPGTGQSRSFRILAHLTGTEFMQ 180
Query: 242 DPDEEALRRSRERFETERNSP 262
DPDEE L++S + TE +P
Sbjct: 181 DPDEEHLKKSSQVPRTEAPAP 201
>gi|166235176 PDZ and LIM domain protein 3 isoform a [Homo sapiens]
Length = 364
Score = 131 bits (330), Expect = 6e-31
Identities = 94/275 (34%), Positives = 140/275 (50%), Gaps = 57/275 (20%)
Query: 1 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
M +V L GP PWGFRL GG DFN PL I+RITPGSKAA + L GD+++AIDG T++M
Sbjct: 1 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 60
Query: 61 THLEAQNKIKSASYNLSLTLQKSK--------------RPIPISTTAPPVQ--------- 97
TH +AQ++IK+A++ L L + + + P I+ + P
Sbjct: 61 THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQDGNYFEHKHN 120
Query: 98 -TPLP-VIPHQKVVVNSPANADY-QERFNPSALKD------------SALSTHKPIEVKG 142
P P VIP + ++P+ D R PS++ + L+ + P+E++
Sbjct: 121 IRPKPFVIPGRSSGCSTPSGIDCGSGRSTPSSVSTVSTICPGDLKVAAKLAPNIPLEMEL 180
Query: 143 LGGKATIIHAQYNTPISMYSQDAIMDAIAGQAQAQGSDFSGSLPIKD---LAVDSASPVY 199
G K I+HAQ+NTP+ +YS D IM+ + GQ S G P+ +V S VY
Sbjct: 181 PGVK--IVHAQFNTPMQLYSDDNIMETLQGQV----STALGETPLMSEPTASVPPESDVY 234
Query: 200 QAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQM 234
+ + ++N+P + QS SFR+L M
Sbjct: 235 RMLHDNRNEP----------TQPRQSGSFRVLQGM 259
>gi|197383100 PDZ and LIM domain 5 isoform b [Homo sapiens]
Length = 487
Score = 131 bits (330), Expect = 6e-31
Identities = 89/268 (33%), Positives = 132/268 (49%), Gaps = 66/268 (24%)
Query: 2 SYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMT 61
+YSV+L GP PWGFRLQGGKDFNMPLTIS + G KAAQ+ + GD+V++IDG+N MT
Sbjct: 3 NYSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMT 62
Query: 62 HLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPHQKVVVNSPANADYQER 121
HLEAQNKIK + +L++TLQ++ +A P P+PV QK V S + Q
Sbjct: 63 HLEAQNKIKGCTGSLNMTLQRA--------SAAPKPEPVPV---QKPTVTSVCSETSQ-- 109
Query: 122 FNPSALKDSALSTHKPIEVKGLGGKATIIHAQYNTPISMYSQDAIMDAIAGQAQ-AQGSD 180
+ GQ + +QG
Sbjct: 110 ----------------------------------------------ELAEGQRRGSQGDS 123
Query: 181 FSGSLPIKDLAVDSASPVYQAVIKSQNKPE---DEADEWARRSSNLQSRSFRILAQMTGT 237
+ P + V+ + Y S + ++ ++W R+ QSRSFRILAQ+TGT
Sbjct: 124 KQQNGPPRKHIVERYTEFYHVPTHSDASKKRLIEDTEDWRPRTGTTQSRSFRILAQITGT 183
Query: 238 EFMQDPDEEALRRSRERFETERNSPRFA 265
E +++ + + +++ ++ SP+ A
Sbjct: 184 EHLKESEADNTKKAN---NSQEPSPQLA 208
>gi|13994151 PDZ and LIM domain 1 [Homo sapiens]
Length = 329
Score = 128 bits (322), Expect = 5e-30
Identities = 89/260 (34%), Positives = 126/260 (48%), Gaps = 39/260 (15%)
Query: 5 VTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLE 64
+ L GPGPWGFRL GGKDF PL ISR+TPGSKAA + L GD++ AIDG NT MTHLE
Sbjct: 6 IDLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLE 65
Query: 65 AQNKIKSASYNLSLTLQKSKRPI--PIST---TAPPVQTPLPVIPHQKVVVNSPANADYQ 119
AQN+IK + NL+LT+ +S+ + P+ T P + L P + + + S N
Sbjct: 66 AQNRIKGCTDNLTLTVARSEHKVWSPLVTEEGKRHPYKMNLASEPQEVLHIGSAHNRSAM 125
Query: 120 ERFNPSALKDSALSTHKPIEVKGLGGKATIIHAQYNTPISMYSQDAIMD--------AIA 171
P ++ +T A +I QYN P +YS + I + A
Sbjct: 126 ----PFTASPASSTT------------ARVITNQYNNPAGLYSSENISNFNNALESKTAA 169
Query: 172 GQAQAQGSDFSGSLPIKDLAVDSASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRIL 231
+A + P L +D S VY+ + + Q E QS SF +L
Sbjct: 170 SGVEANSRPLDHAQPPSSLVIDKESEVYKMLQEKQELNEPPK----------QSTSFLVL 219
Query: 232 AQMTGTEFMQDPDEEALRRS 251
++ +E DP++ + RS
Sbjct: 220 QEILESEEKGDPNKPSGFRS 239
>gi|166235178 PDZ and LIM domain protein 3 isoform b [Homo sapiens]
Length = 316
Score = 122 bits (307), Expect = 3e-28
Identities = 79/234 (33%), Positives = 120/234 (51%), Gaps = 23/234 (9%)
Query: 1 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
M +V L GP PWGFRL GG DFN PL I+RITPGSKAA + L GD+++AIDG T++M
Sbjct: 1 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 60
Query: 61 THLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPHQKVVVNSPANADYQE 120
TH +AQ++IK+A++ L L + + + + +P V P + + + P +
Sbjct: 61 THADAQDRIKAAAHQLCLKIDRGETHL----WSPQVSEDGKAHPFKINLESEP------Q 110
Query: 121 RFNPSALKDSALSTHKPIEVKGLGGKATIIHAQYNTPISMYSQDAIMDAIAGQAQAQGSD 180
F P + + + K ++ A YN+PI +YS I DA+ GQ +
Sbjct: 111 EFKPIGTAHNR-RAQPFVAAANIDDKRQVVSASYNSPIGLYSTSNIQDALHGQLRGLIPS 169
Query: 181 FSGSLPIKDLAVDSASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQM 234
+ P +V S VY+ + ++N+P + QS SFR+L M
Sbjct: 170 SPQNEP--TASVPPESDVYRMLHDNRNEP----------TQPRQSGSFRVLQGM 211
>gi|58533161 PDZ and LIM domain 5 isoform e [Homo sapiens]
Length = 214
Score = 117 bits (293), Expect = 1e-26
Identities = 59/110 (53%), Positives = 77/110 (70%), Gaps = 8/110 (7%)
Query: 2 SYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMT 61
+YSV+L GP PWGFRLQGGKDFNMPLTIS + G KAAQ+ + GD+V++IDG+N MT
Sbjct: 3 NYSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMT 62
Query: 62 HLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPHQKVVVN 111
HLEAQNKIK + +L++TLQ++ +A P P+PV +V N
Sbjct: 63 HLEAQNKIKGCTGSLNMTLQRA--------SAAPKPEPVPVQKKTQVTNN 104
Score = 73.6 bits (179), Expect = 2e-13
Identities = 31/78 (39%), Positives = 55/78 (70%)
Query: 205 SQNKPEDEADEWARRSSNLQSRSFRILAQMTGTEFMQDPDEEALRRSRERFETERNSPRF 264
S+ + ++ ++W R+ QSRSFRILAQ+TGTE +++ + + ++++E+ SP++
Sbjct: 137 SKKRLIEDTEDWRPRTGTTQSRSFRILAQITGTEHLKESEADNTKKAKEKIPLHVFSPKY 196
Query: 265 AKLRNWHHGLSAQILNVK 282
KLR+WHH +SA+ LNV+
Sbjct: 197 TKLRDWHHEVSARALNVQ 214
>gi|42741675 PDZ and LIM domain 7 isoform 2 [Homo sapiens]
Length = 423
Score = 114 bits (284), Expect = 1e-25
Identities = 54/98 (55%), Positives = 73/98 (74%), Gaps = 3/98 (3%)
Query: 2 SYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMT 61
S+ V L GP PWGFRLQGGKDFN+PL+ISR+TPG KAAQ+ ++ GD V++IDG N ++T
Sbjct: 3 SFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLT 62
Query: 62 HLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTP 99
H+EAQNKI++ LSL L +++ P+ + VQTP
Sbjct: 63 HIEAQNKIRACGERLSLGLSRAQ---PVQSKPQKVQTP 97
Score = 60.1 bits (144), Expect = 2e-09
Identities = 29/58 (50%), Positives = 39/58 (67%)
Query: 205 SQNKPEDEADEWARRSSNLQSRSFRILAQMTGTEFMQDPDEEALRRSRERFETERNSP 262
S+ + + ++W R QSRSFRILA +TGTEFMQDPDEE L++S + TE +P
Sbjct: 110 SKQRLMENTEDWRPRPGTGQSRSFRILAHLTGTEFMQDPDEEHLKKSSQVPRTEAPAP 167
>gi|196162711 PDZ and LIM domain 4 isoform 2 [Homo sapiens]
Length = 246
Score = 100 bits (250), Expect = 1e-21
Identities = 48/82 (58%), Positives = 63/82 (76%)
Query: 1 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
M +SVTL GP PWGFRL GG+DF+ PLTISR+ GSKAA + L GDL+ AI+G +T+ M
Sbjct: 1 MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELM 60
Query: 61 THLEAQNKIKSASYNLSLTLQK 82
THLEAQN+IK +L+L++ +
Sbjct: 61 THLEAQNRIKGCHDHLTLSVSR 82
>gi|19923181 PDZ and LIM domain 4 isoform 1 [Homo sapiens]
Length = 330
Score = 100 bits (250), Expect = 1e-21
Identities = 48/82 (58%), Positives = 63/82 (76%)
Query: 1 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
M +SVTL GP PWGFRL GG+DF+ PLTISR+ GSKAA + L GDL+ AI+G +T+ M
Sbjct: 1 MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELM 60
Query: 61 THLEAQNKIKSASYNLSLTLQK 82
THLEAQN+IK +L+L++ +
Sbjct: 61 THLEAQNRIKGCHDHLTLSVSR 82
>gi|38327612 PDZ and LIM domain 2 isoform 3 [Homo sapiens]
Length = 278
Score = 81.3 bits (199), Expect = 9e-16
Identities = 36/91 (39%), Positives = 58/91 (63%)
Query: 1 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
M+ +V + GP PWGFR+ GG+DF+ P+ ++++ KA + L GD++VAI+G + + M
Sbjct: 1 MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM 60
Query: 61 THLEAQNKIKSASYNLSLTLQKSKRPIPIST 91
H EAQ+KI+ + L L L +S+ P T
Sbjct: 61 LHAEAQSKIRQSPSPLRLQLDRSQATSPGQT 91
>gi|28866957 PDZ and LIM domain 2 isoform 1 [Homo sapiens]
Length = 366
Score = 81.3 bits (199), Expect = 9e-16
Identities = 36/91 (39%), Positives = 58/91 (63%)
Query: 1 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
M+ +V + GP PWGFR+ GG+DF+ P+ ++++ KA + L GD++VAI+G + + M
Sbjct: 1 MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM 60
Query: 61 THLEAQNKIKSASYNLSLTLQKSKRPIPIST 91
H EAQ+KI+ + L L L +S+ P T
Sbjct: 61 LHAEAQSKIRQSPSPLRLQLDRSQATSPGQT 91
>gi|21361888 PDZ and LIM domain 2 isoform 2 [Homo sapiens]
Length = 352
Score = 81.3 bits (199), Expect = 9e-16
Identities = 36/91 (39%), Positives = 58/91 (63%)
Query: 1 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
M+ +V + GP PWGFR+ GG+DF+ P+ ++++ KA + L GD++VAI+G + + M
Sbjct: 1 MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM 60
Query: 61 THLEAQNKIKSASYNLSLTLQKSKRPIPIST 91
H EAQ+KI+ + L L L +S+ P T
Sbjct: 61 LHAEAQSKIRQSPSPLRLQLDRSQATSPGQT 91
>gi|166706868 synaptopodin 2-like isoform a [Homo sapiens]
Length = 977
Score = 68.9 bits (167), Expect = 5e-12
Identities = 40/125 (32%), Positives = 68/125 (54%), Gaps = 5/125 (4%)
Query: 5 VTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLE 64
VTL+G PWGFRL GG + PL +S+I S+A ++ L + D ++AI+GV+ ++H
Sbjct: 9 VTLSGGAPWGFRLHGGAEQRKPLQVSKIRRRSQAGRAGLRERDQLLAINGVSCTNLSHAS 68
Query: 65 AQNKIKSASYNLSLTLQKSKRPIPISTTAP-PVQTPLPVIPHQKVVVNSPANADYQERFN 123
A + I ++ L LT+Q+ P+ + +P +Q P+ P + P A +
Sbjct: 69 AMSLIDASGNQLVLTVQRLADEGPVQSPSPHELQVLSPLSP----LSPEPPGAPVPQPLQ 124
Query: 124 PSALK 128
P +L+
Sbjct: 125 PGSLR 129
>gi|193083191 synaptopodin 2 isoform c [Homo sapiens]
Length = 1109
Score = 62.0 bits (149), Expect = 6e-10
Identities = 30/78 (38%), Positives = 51/78 (65%)
Query: 5 VTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLE 64
+++TG PWGFRLQGGK+ PL +++I SKA+ S L +GD VV+I+G +T+ E
Sbjct: 9 ISMTGGAPWGFRLQGGKEQKQPLQVAKIRNQSKASGSGLCEGDEVVSINGNPCADLTYPE 68
Query: 65 AQNKIKSASYNLSLTLQK 82
++S + +L + +++
Sbjct: 69 VIKLMESITDSLQMLIKR 86
>gi|193083185 synaptopodin 2 isoform b [Homo sapiens]
Length = 1093
Score = 62.0 bits (149), Expect = 6e-10
Identities = 30/78 (38%), Positives = 51/78 (65%)
Query: 5 VTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLE 64
+++TG PWGFRLQGGK+ PL +++I SKA+ S L +GD VV+I+G +T+ E
Sbjct: 9 ISMTGGAPWGFRLQGGKEQKQPLQVAKIRNQSKASGSGLCEGDEVVSINGNPCADLTYPE 68
Query: 65 AQNKIKSASYNLSLTLQK 82
++S + +L + +++
Sbjct: 69 VIKLMESITDSLQMLIKR 86
>gi|193083183 synaptopodin 2 isoform a [Homo sapiens]
Length = 1261
Score = 62.0 bits (149), Expect = 6e-10
Identities = 30/78 (38%), Positives = 51/78 (65%)
Query: 5 VTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLE 64
+++TG PWGFRLQGGK+ PL +++I SKA+ S L +GD VV+I+G +T+ E
Sbjct: 9 ISMTGGAPWGFRLQGGKEQKQPLQVAKIRNQSKASGSGLCEGDEVVSINGNPCADLTYPE 68
Query: 65 AQNKIKSASYNLSLTLQK 82
++S + +L + +++
Sbjct: 69 VIKLMESITDSLQMLIKR 86
>gi|118600967 shroom family member 4 [Homo sapiens]
Length = 1493
Score = 49.7 bits (117), Expect = 3e-06
Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 5 VTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHL 63
V L G PWGF L+GG + PLT+S+I G KAA SQ + GD +V I+G +
Sbjct: 13 VQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPL-YGSRQ 71
Query: 64 EAQNKIKSASYNLSLTLQKSKRPI 87
EA IK + L L +++ P+
Sbjct: 72 EALILIKGSFRILKLIVRRRNAPV 95
>gi|11321640 basic beta 1 syntrophin [Homo sapiens]
Length = 538
Score = 49.7 bits (117), Expect = 3e-06
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 11 GPWGFRLQGGKDFNMPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKI 69
G G ++GGK+ MP+ IS+I G A Q+Q L GD +++++G + TH EA +
Sbjct: 121 GGLGISIKGGKENKMPILISKIFKGLAADQTQALYVGDAILSVNGADLRDATHDEAVQAL 180
Query: 70 KSASYNLSLTLQKSKRPIPISTTAPPV-----QTPLPVIP 104
K A + L ++ + P PV +TP P P
Sbjct: 181 KRAGKEVLLEVKYMREATPYVKKGSPVSEIGWETPPPESP 220
>gi|4502175 apical protein of Xenopus-like [Homo sapiens]
Length = 1616
Score = 49.7 bits (117), Expect = 3e-06
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 5 VTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQ-SQLSQGDLVVAIDGVNTDTMTHL 63
V L+G PWGF L+GG++ PL I++I GSKAA +L GD +V I+ +
Sbjct: 29 VQLSGGAPWGFTLKGGREHGEPLVITKIEEGSKAAAVDKLLAGDEIVGINDIGLSGFRQ- 87
Query: 64 EAQNKIKSASYNLSLTLQK 82
EA +K + L L +++
Sbjct: 88 EAICLVKGSHKTLKLVVKR 106
>gi|27436957 membrane associated guanylate kinase, WW and PDZ domain
containing 2 [Homo sapiens]
Length = 1455
Score = 49.3 bits (116), Expect = 4e-06
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 9 GPGPWGFRLQGGKDFNMPLTISRITPGSKAAQS-QLSQGDLVVAIDGVNTDTMTHLEAQN 67
G +GF ++GG+++ M L + R+ A ++ ++ GD ++ I+G +T MTH A
Sbjct: 1153 GAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIE 1212
Query: 68 KIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIP 104
IKS + L L++ +P P +P P
Sbjct: 1213 LIKSGGRRVRLLLKRGTGQVPEYDEPAPWSSPAAAAP 1249
Score = 33.5 bits (75), Expect = 0.22
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 13 WGFRLQGGKDFNMPLTISR-ITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKS 71
+GFR+ GG + P+ I I GS +L GD +V +DG+ TH + +
Sbjct: 788 FGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHH 847
Query: 72 ASYN--LSLTLQK 82
A+ N ++LT+++
Sbjct: 848 AARNGQVNLTVRR 860
Score = 30.0 bits (66), Expect = 2.4
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 13 WGFRLQGGKDFNMPLTISRITPGSKAAQS-QLSQGDLVVAIDGVNTDTMTHLEAQNKIKS 71
+GF + GG + + L + + P AAQ ++ GD++V I+ V TH + +S
Sbjct: 436 FGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQS 495
Query: 72 ASYNLSLTLQKSK-RPIPISTTAP 94
S+ L + P+P P
Sbjct: 496 VPIGQSVNLVLCRGYPLPFDPEDP 519
>gi|13376349 PDZ domain containing 7 [Homo sapiens]
Length = 517
Score = 48.5 bits (114), Expect = 6e-06
Identities = 22/72 (30%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 14 GFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSAS 73
GF ++GGK+F + + +S++ G A ++ + GD V+A +GV D ++H +A +K +
Sbjct: 223 GFNIRGGKEFGLGIYVSKVDHGGLAEENGIKVGDQVLAANGVRFDDISHSQAVEVLKGQT 282
Query: 74 YNLSLTLQKSKR 85
+ + LT++++ R
Sbjct: 283 H-IMLTIKETGR 293
Score = 38.5 bits (88), Expect = 0.007
Identities = 20/84 (23%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 2 SYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMT 61
S V + G GF ++GG + + + +S++ GS A ++ L GD + ++G++ ++ T
Sbjct: 86 SVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTT 145
Query: 62 HLEAQNKIKSASYNLSLTLQKSKR 85
+ + K+ ++S L + +++ R
Sbjct: 146 -MGSAVKVLTSSSRLHMMVRRMGR 168
>gi|155969695 membrane-associated guanylate kinase-related 3 isoform
2 [Homo sapiens]
Length = 1125
Score = 48.5 bits (114), Expect = 6e-06
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 9 GPGPWGFRLQGGKDFNMPLTISRIT-PGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQN 67
GP +GF L+GGK++NM L I R+ G ++ GD +V I+G T +TH A
Sbjct: 1027 GPRGFGFSLRGGKEYNMGLFILRLAEDGPAIKDGRIHVGDQIVEINGEPTQGITHTRAIE 1086
Query: 68 KIKSASYNLSLTLQKSKRPIPISTTAP 94
I++ + L L+ IP AP
Sbjct: 1087 LIQAGGNKVLLLLRPGTGLIPDHGLAP 1113
>gi|11545920 lin-7 homolog B [Homo sapiens]
Length = 207
Score = 48.1 bits (113), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 14 GFRLQGGKDFNMPLTISRITPGSKA-AQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSA 72
GF + GGK+ N P+ ISR+ PG A L +GD +++++GV+ + H +A +K+A
Sbjct: 104 GFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAA 163
Query: 73 SYNLSLTLQKSKR 85
++ L ++ + R
Sbjct: 164 QGSVKLVVRYTPR 176
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.127 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,552,259
Number of Sequences: 37866
Number of extensions: 460107
Number of successful extensions: 1663
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1457
Number of HSP's gapped (non-prelim): 215
length of query: 283
length of database: 18,247,518
effective HSP length: 101
effective length of query: 182
effective length of database: 14,423,052
effective search space: 2624995464
effective search space used: 2624995464
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.