Guide to the Human Genome
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Name: SYNPO2 Sequence: fasta or formatted (1093aa) NCBI GI: 193083185
Description:

synaptopodin 2 isoform b

Referenced in:

Synapses

Other entries for this name:
alt prot [1261aa] synaptopodin 2 isoform a
alt prot [1109aa] synaptopodin 2 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         95           2
 C cysteine            1.0         11           1
 D aspartate           4.0         44           2
 E glutamate           7.0         77           4
 F phenylalanine       2.6         28           2
 G glycine             6.6         72           2
 H histidine           1.3         14           1
 I isoleucine          3.1         34           2
 K lysine              6.8         74           3
 L leucine             5.9         65           3
 M methionine          1.8         20           1
 N asparagine          3.2         35           1
 P proline            10.8        118           3
 Q glutamine           5.5         60           2
 R arginine            5.2         57           4
 S serine             11.8        129           4
 T threonine           5.3         58           3
 V valine              6.9         75           2
 W tryptophan          0.6          7           1
 Y tyrosine            1.8         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   synaptopodin 2 isoform b 
SYNPO2                0.992   synaptopodin 2 isoform c 
SYNPO2                0.992   synaptopodin 2 isoform a 
SYNPO2L               0.150   synaptopodin 2-like isoform a 
SYNPO2L               0.148   synaptopodin 2-like isoform b 
SYNPO                 0.040   synaptopodin isoform B 
SYNPO                 0.035   synaptopodin isoform A 
POLR2A                0.023   DNA-directed RNA polymerase II A 
MLL2                  0.021   myeloid/lymphoid or mixed-lineage leukemia 2 
PDLIM1                0.021   PDZ and LIM domain 1 
NACA                  0.021   nascent polypeptide-associated complex alpha subuni...
FLJ22184              0.020   PREDICTED: hypothetical protein FLJ22184 
PDLIM5                0.020   PDZ and LIM domain 5 isoform b 
FLJ22184              0.019   PREDICTED: hypothetical protein FLJ22184 
PDLIM5                0.019   PDZ and LIM domain 5 isoform d 
RAPH1                 0.019   Ras association and pleckstrin homology domains 1 is...
LDB3                  0.019   LIM domain binding 3 isoform 3 
LDB3                  0.019   LIM domain binding 3 isoform 1 
PDLIM5                0.019   PDZ and LIM domain 5 isoform e 
PDLIM5                0.019   PDZ and LIM domain 5 isoform a 
LOC284297             0.018   hypothetical protein LOC284297 
LDB3                  0.017   LIM domain binding 3 isoform 4 
LDB3                  0.017   LIM domain binding 3 isoform 2 
MDC1                  0.017   mediator of DNA-damage checkpoint 1 
SHROOM4               0.017   shroom family member 4 
PDLIM4                0.016   PDZ and LIM domain 4 isoform 2 
PDLIM4                0.016   PDZ and LIM domain 4 isoform 1 
FLJ22184              0.016   PREDICTED: hypothetical protein LOC80164 
TACC2                 0.016   transforming, acidic coiled-coil containing protein...
TACC2                 0.016   transforming, acidic coiled-coil containing protein ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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