PDLIM5 11466

Name: PDLIM5	Sequence: fasta or formatted (487aa)		NCBI GI: 197383100
Description: PDZ and LIM domain 5 isoform b		Referenced in: LIM Domain Proteins
Other entries for this name: alt prot [596aa] PDZ and LIM domain 5 isoform a alt prot [234aa] PDZ and LIM domain 5 isoform d alt prot [214aa] PDZ and LIM domain 5 isoform e
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.8 38 4 C cysteine 4.3 21 2 D aspartate 3.5 17 1 E glutamate 6.4 31 2 F phenylalanine 3.9 19 2 G glycine 8.0 39 2 H histidine 3.1 15 1 I isoleucine 3.9 19 1 K lysine 6.0 29 2 L leucine 6.0 29 1 M methionine 1.6 8 1 N asparagine 3.9 19 2 P proline 6.6 32 2 Q glutamine 5.1 25 2 R arginine 4.5 22 2 S serine 9.2 45 2 T threonine 6.8 33 2 V valine 6.0 29 2 W tryptophan 1.2 6 1 Y tyrosine 2.3 11 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PDZ and LIM domain 5 isoform b PDLIM5 0.807 PDZ and LIM domain 5 isoform a PDLIM7 0.406 PDZ and LIM domain 7 isoform 1 LDB3 0.397 LIM domain binding 3 isoform 2 PDLIM7 0.393 PDZ and LIM domain 7 isoform 2 PDLIM5 0.371 PDZ and LIM domain 5 isoform d PDLIM5 0.306 PDZ and LIM domain 5 isoform e LDB3 0.299 LIM domain binding 3 isoform 1 PDLIM7 0.151 PDZ and LIM domain 7 isoform 4 TGFB1I1 0.146 transforming growth factor beta 1 induced transcrip... TGFB1I1 0.146 transforming growth factor beta 1 induced transcript... LPXN 0.132 leupaxin isoform 1 LPXN 0.132 leupaxin isoform 2 PXN 0.123 paxillin isoform 3 PXN 0.123 paxillin isoform 2 PXN 0.123 paxillin isoform 1 LDB3 0.107 LIM domain binding 3 isoform 4 LIMS2 0.107 LIM and senescent cell antigen-like domains 2 isofo... LIMS2 0.107 LIM and senescent cell antigen-like domains 2 isofo... LIMS2 0.107 LIM and senescent cell antigen-like domains 2 isofo... LIMS2 0.107 LIM and senescent cell antigen-like domains 2 isofor... LIMS1 0.103 LIM and senescent cell antigen-like domains 1 FHL3 0.095 four and a half LIM domains 3 LDB3 0.093 LIM domain binding 3 isoform 3 PDLIM1 0.090 PDZ and LIM domain 1 FBLIM1 0.084 filamin-binding LIM protein-1 isoform a FHL2 0.081 four and a half LIM domains 2 FHL2 0.081 four and a half LIM domains 2 FHL2 0.081 four and a half LIM domains 2 FHL2 0.081 four and a half LIM domains 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.