LDB3 2485

Name: LDB3	Sequence: fasta or formatted (330aa)		NCBI GI: 122056617
Description: LIM domain binding 3 isoform 3		Referenced in: LIM Domain Proteins Muscle
Other entries for this name: alt prot [617aa] LIM domain binding 3 isoform 2 alt prot [283aa] LIM domain binding 3 isoform 4 alt prot [727aa] LIM domain binding 3 isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 9.1 30 2 C cysteine 0.0 0 0 D aspartate 4.2 14 1 E glutamate 4.8 16 2 F phenylalanine 2.7 9 1 G glycine 7.0 23 2 H histidine 1.2 4 2 I isoleucine 3.6 12 1 K lysine 4.5 15 1 L leucine 9.1 30 2 M methionine 2.4 8 1 N asparagine 3.6 12 2 P proline 10.6 35 2 Q glutamine 5.5 18 1 R arginine 7.0 23 2 S serine 12.1 40 2 T threonine 6.1 20 2 V valine 3.6 12 2 W tryptophan 0.9 3 1 Y tyrosine 1.8 6 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 LIM domain binding 3 isoform 3 LDB3 0.897 LIM domain binding 3 isoform 1 LDB3 0.611 LIM domain binding 3 isoform 4 LDB3 0.511 LIM domain binding 3 isoform 2 PDLIM5 0.217 PDZ and LIM domain 5 isoform a PDLIM5 0.149 PDZ and LIM domain 5 isoform e PDLIM5 0.146 PDZ and LIM domain 5 isoform d PDLIM5 0.146 PDZ and LIM domain 5 isoform b PDLIM1 0.146 PDZ and LIM domain 1 PDLIM7 0.142 PDZ and LIM domain 7 isoform 2 PDLIM3 0.141 PDZ and LIM domain protein 3 isoform a PDLIM7 0.141 PDZ and LIM domain 7 isoform 4 PDLIM7 0.141 PDZ and LIM domain 7 isoform 1 PDLIM4 0.131 PDZ and LIM domain 4 isoform 1 PDLIM4 0.130 PDZ and LIM domain 4 isoform 2 PDLIM3 0.128 PDZ and LIM domain protein 3 isoform b PDLIM2 0.103 PDZ and LIM domain 2 isoform 3 PDLIM2 0.103 PDZ and LIM domain 2 isoform 1 PDLIM2 0.103 PDZ and LIM domain 2 isoform 2 SYNPO2L 0.074 synaptopodin 2-like isoform a SYNPO2 0.063 synaptopodin 2 isoform c SYNPO2 0.063 synaptopodin 2 isoform b SYNPO2 0.063 synaptopodin 2 isoform a MAGI1 0.059 membrane associated guanylate kinase, WW and PDZ dom... MAGI2 0.046 membrane associated guanylate kinase, WW and PDZ dom... SHROOM4 0.040 shroom family member 4 SNTB1 0.040 basic beta 1 syntrophin SHROOM2 0.040 apical protein of Xenopus-like PDZD7 0.038 PDZ domain containing 7 MAGI3 0.038 membrane-associated guanylate kinase-related 3 iso... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.