PDLIM4 11618

Name: PDLIM4	Sequence: fasta or formatted (330aa)		NCBI GI: 19923181
Description: PDZ and LIM domain 4 isoform 1		Referenced in: LIM Domain Proteins
Other entries for this name: alt prot [246aa] PDZ and LIM domain 4 isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.9 26 2 C cysteine 2.7 9 1 D aspartate 4.8 16 2 E glutamate 5.8 19 1 F phenylalanine 2.1 7 2 G glycine 10.9 36 2 H histidine 3.6 12 1 I isoleucine 2.7 9 1 K lysine 3.6 12 1 L leucine 8.8 29 1 M methionine 1.8 6 1 N asparagine 1.8 6 1 P proline 11.2 37 3 Q glutamine 3.0 10 1 R arginine 7.6 25 2 S serine 8.8 29 2 T threonine 4.2 14 2 V valine 5.2 17 2 W tryptophan 0.9 3 1 Y tyrosine 2.4 8 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PDZ and LIM domain 4 isoform 1 PDLIM4 0.663 PDZ and LIM domain 4 isoform 2 PDLIM1 0.358 PDZ and LIM domain 1 PDLIM3 0.357 PDZ and LIM domain protein 3 isoform b PDLIM3 0.345 PDZ and LIM domain protein 3 isoform a PDLIM2 0.217 PDZ and LIM domain 2 isoform 2 PDLIM2 0.190 PDZ and LIM domain 2 isoform 1 PDLIM7 0.145 PDZ and LIM domain 7 isoform 2 PDLIM7 0.142 PDZ and LIM domain 7 isoform 1 PDLIM2 0.129 PDZ and LIM domain 2 isoform 3 LDB3 0.124 LIM domain binding 3 isoform 3 LDB3 0.124 LIM domain binding 3 isoform 1 PDLIM5 0.117 PDZ and LIM domain 5 isoform b LDB3 0.112 LIM domain binding 3 isoform 4 LDB3 0.112 LIM domain binding 3 isoform 2 PDLIM7 0.109 PDZ and LIM domain 7 isoform 4 PDLIM5 0.108 PDZ and LIM domain 5 isoform a PDLIM5 0.100 PDZ and LIM domain 5 isoform e PDLIM5 0.099 PDZ and LIM domain 5 isoform d SYNPO2L 0.060 synaptopodin 2-like isoform a SYNPO2 0.052 synaptopodin 2 isoform c SYNPO2 0.052 synaptopodin 2 isoform b SYNPO2 0.052 synaptopodin 2 isoform a WTIP 0.046 Wilms tumor 1 interacting protein PXN 0.046 paxillin isoform 3 PXN 0.046 paxillin isoform 2 TRIP6 0.045 thyroid receptor-interacting protein 6 SHROOM2 0.043 apical protein of Xenopus-like LPXN 0.042 leupaxin isoform 1 LPXN 0.042 leupaxin isoform 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.