PDLIM1 3613

Name: PDLIM1	Sequence: fasta or formatted (329aa)		NCBI GI: 13994151
Description: PDZ and LIM domain 1		Referenced in: LIM Domain Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.3 24 2 C cysteine 2.4 8 1 D aspartate 3.6 12 1 E glutamate 7.9 26 2 F phenylalanine 3.0 10 2 G glycine 6.7 22 2 H histidine 3.0 10 1 I isoleucine 4.3 14 1 K lysine 6.7 22 1 L leucine 7.0 23 1 M methionine 1.8 6 1 N asparagine 5.8 19 2 P proline 7.0 23 2 Q glutamine 4.6 15 2 R arginine 4.3 14 1 S serine 7.9 26 2 T threonine 6.7 22 2 V valine 7.3 24 2 W tryptophan 0.6 2 1 Y tyrosine 2.1 7 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PDZ and LIM domain 1 PDLIM3 0.491 PDZ and LIM domain protein 3 isoform b PDLIM3 0.438 PDZ and LIM domain protein 3 isoform a PDLIM4 0.370 PDZ and LIM domain 4 isoform 1 PDLIM2 0.268 PDZ and LIM domain 2 isoform 2 PDLIM2 0.228 PDZ and LIM domain 2 isoform 1 PDLIM4 0.192 PDZ and LIM domain 4 isoform 2 LDB3 0.161 LIM domain binding 3 isoform 2 LDB3 0.159 LIM domain binding 3 isoform 4 PDLIM7 0.153 PDZ and LIM domain 7 isoform 1 PDLIM7 0.152 PDZ and LIM domain 7 isoform 2 PDLIM2 0.147 PDZ and LIM domain 2 isoform 3 LDB3 0.142 LIM domain binding 3 isoform 3 LDB3 0.142 LIM domain binding 3 isoform 1 PDLIM5 0.138 PDZ and LIM domain 5 isoform b PDLIM5 0.138 PDZ and LIM domain 5 isoform a PDLIM7 0.128 PDZ and LIM domain 7 isoform 4 PDLIM5 0.124 PDZ and LIM domain 5 isoform e PDLIM5 0.124 PDZ and LIM domain 5 isoform d SYNPO2 0.071 synaptopodin 2 isoform c SYNPO2 0.071 synaptopodin 2 isoform b SYNPO2 0.071 synaptopodin 2 isoform a SYNPO2L 0.054 synaptopodin 2-like isoform a SHROOM2 0.050 apical protein of Xenopus-like SHROOM4 0.037 shroom family member 4 SHROOM3 0.037 shroom family member 3 protein JUB 0.031 ajuba isoform 1 PXN 0.031 paxillin isoform 3 PXN 0.031 paxillin isoform 2 PXN 0.031 paxillin isoform 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.