PDLIM5 33648

Name: PDLIM5	Sequence: fasta or formatted (234aa)		NCBI GI: 58533159
Description: PDZ and LIM domain 5 isoform d		Referenced in: LIM Domain Proteins
Other entries for this name: alt prot [596aa] PDZ and LIM domain 5 isoform a alt prot [487aa] PDZ and LIM domain 5 isoform b alt prot [214aa] PDZ and LIM domain 5 isoform e
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.8 16 2 C cysteine 0.9 2 1 D aspartate 4.3 10 1 E glutamate 6.0 14 1 F phenylalanine 2.1 5 1 G glycine 7.3 17 2 H histidine 3.4 8 2 I isoleucine 4.7 11 1 K lysine 8.5 20 2 L leucine 6.4 15 1 M methionine 1.7 4 1 N asparagine 3.8 9 1 P proline 6.8 16 2 Q glutamine 6.0 14 2 R arginine 6.4 15 2 S serine 8.5 20 2 T threonine 7.3 17 2 V valine 6.0 14 2 W tryptophan 1.3 3 1 Y tyrosine 1.7 4 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PDZ and LIM domain 5 isoform d PDLIM5 0.838 PDZ and LIM domain 5 isoform e PDLIM5 0.814 PDZ and LIM domain 5 isoform b PDLIM7 0.410 PDZ and LIM domain 7 isoform 4 PDLIM5 0.388 PDZ and LIM domain 5 isoform a PDLIM7 0.322 PDZ and LIM domain 7 isoform 1 PDLIM7 0.315 PDZ and LIM domain 7 isoform 2 LDB3 0.308 LIM domain binding 3 isoform 4 LDB3 0.242 LIM domain binding 3 isoform 2 LDB3 0.204 LIM domain binding 3 isoform 3 LDB3 0.204 LIM domain binding 3 isoform 1 PDLIM1 0.177 PDZ and LIM domain 1 PDLIM4 0.146 PDZ and LIM domain 4 isoform 2 PDLIM4 0.146 PDZ and LIM domain 4 isoform 1 PDLIM3 0.137 PDZ and LIM domain protein 3 isoform b PDLIM3 0.137 PDZ and LIM domain protein 3 isoform a PDLIM2 0.135 PDZ and LIM domain 2 isoform 3 PDLIM2 0.135 PDZ and LIM domain 2 isoform 1 PDLIM2 0.135 PDZ and LIM domain 2 isoform 2 SYNPO2 0.089 synaptopodin 2 isoform c SYNPO2 0.089 synaptopodin 2 isoform b SYNPO2 0.089 synaptopodin 2 isoform a SYNPO2L 0.086 synaptopodin 2-like isoform a SHROOM4 0.078 shroom family member 4 SHROOM2 0.064 apical protein of Xenopus-like MAGIX 0.060 MAGI family member, X-linked isoform b MAGIX 0.060 MAGI family member, X-linked isoform a MAGI3 0.058 membrane-associated guanylate kinase-related 3 iso... SHROOM3 0.055 shroom family member 3 protein PDZD7 0.055 PDZ domain containing 7 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.