PDLIM3 6878

Name: PDLIM3	Sequence: fasta or formatted (364aa)		NCBI GI: 166235176
Description: PDZ and LIM domain protein 3 isoform a		Referenced in: LIM Domain Proteins Muscle
Other entries for this name: alt prot [316aa] PDZ and LIM domain protein 3 isoform b
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.4 27 4 C cysteine 3.0 11 1 D aspartate 6.0 22 2 E glutamate 4.9 18 1 F phenylalanine 3.0 11 2 G glycine 9.3 34 2 H histidine 3.0 11 1 I isoleucine 4.9 18 1 K lysine 4.9 18 1 L leucine 6.6 24 1 M methionine 2.5 9 1 N asparagine 3.3 12 1 P proline 9.1 33 2 Q glutamine 4.1 15 1 R arginine 5.2 19 1 S serine 7.4 27 2 T threonine 6.0 22 1 V valine 6.3 23 2 W tryptophan 0.5 2 1 Y tyrosine 2.2 8 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PDZ and LIM domain protein 3 isoform a PDLIM3 0.705 PDZ and LIM domain protein 3 isoform b PDLIM1 0.387 PDZ and LIM domain 1 PDLIM4 0.315 PDZ and LIM domain 4 isoform 1 PDLIM2 0.186 PDZ and LIM domain 2 isoform 2 PDLIM2 0.157 PDZ and LIM domain 2 isoform 1 PDLIM4 0.150 PDZ and LIM domain 4 isoform 2 LDB3 0.145 LIM domain binding 3 isoform 4 LDB3 0.145 LIM domain binding 3 isoform 2 LDB3 0.122 LIM domain binding 3 isoform 3 LDB3 0.122 LIM domain binding 3 isoform 1 PDLIM5 0.105 PDZ and LIM domain 5 isoform b PDLIM2 0.101 PDZ and LIM domain 2 isoform 3 PDLIM7 0.101 PDZ and LIM domain 7 isoform 2 PDLIM7 0.097 PDZ and LIM domain 7 isoform 4 PDLIM7 0.097 PDZ and LIM domain 7 isoform 1 PDLIM5 0.090 PDZ and LIM domain 5 isoform a PDLIM5 0.085 PDZ and LIM domain 5 isoform e PDLIM5 0.085 PDZ and LIM domain 5 isoform d SYNPO2L 0.055 synaptopodin 2-like isoform a SYNPO2 0.047 synaptopodin 2 isoform c SYNPO2 0.047 synaptopodin 2 isoform b SYNPO2 0.047 synaptopodin 2 isoform a SHROOM2 0.042 apical protein of Xenopus-like ABLIM2 0.038 actin binding LIM protein family, member 2 isoform ... ABLIM2 0.038 actin binding LIM protein family, member 2 isoform ... ABLIM2 0.038 actin binding LIM protein family, member 2 isoform ... ABLIM2 0.038 actin binding LIM protein family, member 2 isoform ... ABLIM2 0.038 actin binding LIM protein family, member 2 isoform ... ABLIM2 0.038 actin binding LIM protein family, member 2 isoform ... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.