Guide to the Human Genome
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Name: LDB3 Sequence: fasta or formatted (617aa) NCBI GI: 122056614
Description:

LIM domain binding 3 isoform 2

Referenced in:

LIM Domain Proteins
Muscle

Other entries for this name:
alt prot [330aa] LIM domain binding 3 isoform 3
alt prot [283aa] LIM domain binding 3 isoform 4
alt prot [727aa] LIM domain binding 3 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         65           2
 C cysteine            3.1         19           1
 D aspartate           3.9         24           2
 E glutamate           4.1         25           2
 F phenylalanine       3.6         22           2
 G glycine             5.5         34           2
 H histidine           2.6         16           1
 I isoleucine          3.9         24           2
 K lysine              4.9         30           2
 L leucine             5.0         31           1
 M methionine          1.8         11           1
 N asparagine          3.6         22           2
 P proline            11.5         71           2
 Q glutamine           4.7         29           1
 R arginine            3.9         24           2
 S serine              9.9         61           2
 T threonine           7.3         45           2
 V valine              5.3         33           3
 W tryptophan          1.0          6           1
 Y tyrosine            4.1         25           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   LIM domain binding 3 isoform 2 
LDB3                  0.841   LIM domain binding 3 isoform 1 
LDB3                  0.375   LIM domain binding 3 isoform 4 
PDLIM5                0.319   PDZ and LIM domain 5 isoform a 
PDLIM5                0.311   PDZ and LIM domain 5 isoform b 
LDB3                  0.256   LIM domain binding 3 isoform 3 
PDLIM7                0.216   PDZ and LIM domain 7 isoform 2 
PDLIM7                0.211   PDZ and LIM domain 7 isoform 1 
TGFB1I1               0.117   transforming growth factor beta 1 induced transcrip...
TGFB1I1               0.117   transforming growth factor beta 1 induced transcript...
PXN                   0.108   paxillin isoform 3 
PXN                   0.108   paxillin isoform 2 
LPXN                  0.106   leupaxin isoform 1 
LPXN                  0.106   leupaxin isoform 2 
PXN                   0.103   paxillin isoform 1 
PDLIM7                0.091   PDZ and LIM domain 7 isoform 4 
PDLIM5                0.087   PDZ and LIM domain 5 isoform d 
PDLIM3                0.084   PDZ and LIM domain protein 3 isoform a 
PDLIM1                0.083   PDZ and LIM domain 1 
PDLIM3                0.077   PDZ and LIM domain protein 3 isoform b 
FHL3                  0.075   four and a half LIM domains 3 
PDLIM5                0.073   PDZ and LIM domain 5 isoform e 
FBLIM1                0.070   filamin-binding LIM protein-1 isoform a 
FHL2                  0.069   four and a half LIM domains 2 
FHL2                  0.069   four and a half LIM domains 2 
FHL2                  0.069   four and a half LIM domains 2 
FHL2                  0.069   four and a half LIM domains 2 
FHL1                  0.069   four and a half LIM domains 1 isoform 2 
FHL1                  0.069   four and a half LIM domains 1 isoform 2 
FHL1                  0.069   four and a half LIM domains 1 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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