SYNPO2 10730

Name: SYNPO2	Sequence: fasta or formatted (1261aa)		NCBI GI: 193083183
Description: synaptopodin 2 isoform a		Referenced in: Synapses
Other entries for this name: alt prot [1093aa] synaptopodin 2 isoform b alt prot [1109aa] synaptopodin 2 isoform c
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.6 109 3 C cysteine 1.0 13 1 D aspartate 4.0 51 2 E glutamate 6.6 83 4 F phenylalanine 2.3 29 2 G glycine 6.4 81 2 H histidine 1.2 15 1 I isoleucine 3.1 39 2 K lysine 6.3 79 3 L leucine 5.9 74 3 M methionine 1.9 24 1 N asparagine 3.6 46 3 P proline 10.8 136 3 Q glutamine 5.6 70 2 R arginine 5.6 71 4 S serine 11.8 149 4 T threonine 5.4 68 3 V valine 6.4 81 2 W tryptophan 0.8 10 1 Y tyrosine 2.6 33 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 synaptopodin 2 isoform a SYNPO2 0.853 synaptopodin 2 isoform c SYNPO2 0.853 synaptopodin 2 isoform b SYNPO2L 0.126 synaptopodin 2-like isoform a SYNPO2L 0.125 synaptopodin 2-like isoform b SYNPO 0.038 synaptopodin isoform A SYNPO 0.030 synaptopodin isoform B NACA 0.021 nascent polypeptide-associated complex alpha subuni... FLJ22184 0.020 PREDICTED: hypothetical protein FLJ22184 MLL2 0.018 myeloid/lymphoid or mixed-lineage leukemia 2 PDLIM1 0.018 PDZ and LIM domain 1 FLJ22184 0.018 PREDICTED: hypothetical protein FLJ22184 PDLIM5 0.018 PDZ and LIM domain 5 isoform b POLR2A 0.018 DNA-directed RNA polymerase II A RAPH1 0.018 Ras association and pleckstrin homology domains 1 is... MDC1 0.016 mediator of DNA-damage checkpoint 1 PDLIM5 0.016 PDZ and LIM domain 5 isoform d LDB3 0.016 LIM domain binding 3 isoform 3 LDB3 0.016 LIM domain binding 3 isoform 1 PDLIM5 0.016 PDZ and LIM domain 5 isoform e PDLIM5 0.016 PDZ and LIM domain 5 isoform a FLJ22184 0.016 PREDICTED: hypothetical protein LOC80164 MUC17 0.016 mucin 17 LOC284297 0.016 hypothetical protein LOC284297 LDB3 0.015 LIM domain binding 3 isoform 4 LDB3 0.015 LIM domain binding 3 isoform 2 SRCAP 0.014 Snf2-related CBP activator protein CIC 0.014 capicua homolog SHROOM4 0.014 shroom family member 4 PRG4 0.014 proteoglycan 4 isoform D Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.