Guide to the Human Genome
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Name: PDZD7 Sequence: fasta or formatted (517aa) NCBI GI: 13376349
Description:

PDZ domain containing 7

Referenced in:

Auditory and Vestibular Functions
PDZ Domain

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         28           2
 C cysteine            1.7          9           2
 D aspartate           5.0         26           2
 E glutamate           6.2         32           2
 F phenylalanine       2.1         11           2
 G glycine            11.4         59           2
 H histidine           1.7          9           1
 I isoleucine          4.1         21           2
 K lysine              4.8         25           2
 L leucine             9.3         48           3
 M methionine          2.3         12           2
 N asparagine          1.9         10           1
 P proline             5.0         26           2
 Q glutamine           2.9         15           2
 R arginine            8.3         43           2
 S serine             13.2         68           4
 T threonine           5.0         26           2
 V valine              6.6         34           2
 W tryptophan          1.2          6           1
 Y tyrosine            1.7          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PDZ domain containing 7 
DFNB31                0.141   CASK-interacting protein CIP98 isoform 1 
USH1C                 0.083   harmonin isoform b3 
USH1C                 0.083   harmonin isoform a 
SCRIB                 0.052   scribble isoform b 
SCRIB                 0.052   scribble isoform a 
LOC100133567          0.048   PREDICTED: similar to Rap guanine nucleotide exchan...
RAPGEF2               0.048   Rap guanine nucleotide exchange factor 2 
DLG4                  0.046   post-synaptic density protein 95 isoform 1 
DLG4                  0.046   post-synaptic density protein 95 isoform 2 
RAPGEF6               0.045   PDZ domain-containing guanine nucleotide exchange fa...
PDZD11                0.045   PDZ domain containing 11 
MPDZ                  0.044   multiple PDZ domain protein 
INADL                 0.043   InaD-like 
DLG2                  0.043   chapsyn-110 isoform 3 
DLG3                  0.042   synapse-associated protein 102 isoform a 
LIN7B                 0.040   lin-7 homolog B 
LIN7C                 0.039   lin-7 homolog C 
DLG2                  0.037   chapsyn-110 isoform 1 
DLG2                  0.037   chapsyn-110 isoform 2 
LIN7A                 0.037   lin-7 homolog A 
LNX1                  0.037   ligand of numb-protein X 1 isoform a 
LNX1                  0.037   ligand of numb-protein X 1 isoform b 
MAGI1                 0.037   membrane associated guanylate kinase, WW and PDZ dom...
MAGI1                 0.037   membrane associated guanylate kinase, WW and PDZ dom...
MAGI1                 0.037   membrane associated guanylate kinase, WW and PDZ dom...
PDZK1                 0.037   PDZ domain containing 1 
MAGI2                 0.036   membrane associated guanylate kinase, WW and PDZ dom...
PARD3B                0.034   par-3 partitioning defective 3 homolog B isoform a ...
PARD3B                0.034   par-3 partitioning defective 3 homolog B isoform c ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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