PDLIM4 11320

Name: PDLIM4	Sequence: fasta or formatted (246aa)		NCBI GI: 196162711
Description: PDZ and LIM domain 4 isoform 2		Referenced in: LIM Domain Proteins
Other entries for this name: alt prot [330aa] PDZ and LIM domain 4 isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 9.8 24 2 C cysteine 1.6 4 1 D aspartate 4.5 11 2 E glutamate 5.3 13 1 F phenylalanine 1.6 4 1 G glycine 10.2 25 2 H histidine 4.1 10 1 I isoleucine 3.3 8 1 K lysine 1.6 4 1 L leucine 7.3 18 1 M methionine 2.0 5 1 N asparagine 1.2 3 1 P proline 11.8 29 3 Q glutamine 3.3 8 1 R arginine 8.1 20 2 S serine 12.6 31 2 T threonine 5.7 14 2 V valine 4.1 10 1 W tryptophan 0.8 2 1 Y tyrosine 1.2 3 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PDZ and LIM domain 4 isoform 2 PDLIM4 0.919 PDZ and LIM domain 4 isoform 1 PDLIM1 0.258 PDZ and LIM domain 1 PDLIM3 0.245 PDZ and LIM domain protein 3 isoform b PDLIM3 0.229 PDZ and LIM domain protein 3 isoform a PDLIM2 0.185 PDZ and LIM domain 2 isoform 1 PDLIM2 0.185 PDZ and LIM domain 2 isoform 2 PDLIM2 0.183 PDZ and LIM domain 2 isoform 3 LDB3 0.170 LIM domain binding 3 isoform 3 LDB3 0.170 LIM domain binding 3 isoform 1 LDB3 0.156 LIM domain binding 3 isoform 4 LDB3 0.156 LIM domain binding 3 isoform 2 PDLIM7 0.152 PDZ and LIM domain 7 isoform 4 PDLIM7 0.152 PDZ and LIM domain 7 isoform 1 PDLIM5 0.150 PDZ and LIM domain 5 isoform a PDLIM7 0.148 PDZ and LIM domain 7 isoform 2 PDLIM5 0.139 PDZ and LIM domain 5 isoform b PDLIM5 0.139 PDZ and LIM domain 5 isoform e PDLIM5 0.137 PDZ and LIM domain 5 isoform d SYNPO2L 0.083 synaptopodin 2-like isoform a SYNPO2 0.073 synaptopodin 2 isoform c SYNPO2 0.073 synaptopodin 2 isoform b SYNPO2 0.073 synaptopodin 2 isoform a SHROOM2 0.060 apical protein of Xenopus-like SHROOM4 0.050 shroom family member 4 MAGI1 0.048 membrane associated guanylate kinase, WW and PDZ dom... MAGIX 0.048 MAGI family member, X-linked isoform b SHROOM3 0.046 shroom family member 3 protein MAGIX 0.046 MAGI family member, X-linked isoform a SLC9A3R2 0.042 solute carrier family 9 isoform 3 regulator 2 isofo... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.