LDB3 2486

Name: LDB3	Sequence: fasta or formatted (283aa)		NCBI GI: 122056619
Description: LIM domain binding 3 isoform 4		Referenced in: LIM Domain Proteins Muscle
Other entries for this name: alt prot [617aa] LIM domain binding 3 isoform 2 alt prot [330aa] LIM domain binding 3 isoform 3 alt prot [727aa] LIM domain binding 3 isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 9.2 26 2 C cysteine 0.0 0 0 D aspartate 5.3 15 1 E glutamate 4.2 12 2 F phenylalanine 2.8 8 1 G glycine 5.7 16 2 H histidine 2.1 6 2 I isoleucine 6.0 17 2 K lysine 5.7 16 1 L leucine 7.4 21 1 M methionine 2.5 7 1 N asparagine 4.6 13 1 P proline 7.1 20 2 Q glutamine 7.1 20 1 R arginine 5.3 15 2 S serine 11.0 31 2 T threonine 6.0 17 2 V valine 4.9 14 3 W tryptophan 1.1 3 1 Y tyrosine 2.1 6 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 LIM domain binding 3 isoform 4 LDB3 0.882 LIM domain binding 3 isoform 2 LDB3 0.720 LIM domain binding 3 isoform 3 LDB3 0.599 LIM domain binding 3 isoform 1 PDLIM7 0.282 PDZ and LIM domain 7 isoform 4 PDLIM5 0.259 PDZ and LIM domain 5 isoform d PDLIM5 0.216 PDZ and LIM domain 5 isoform a PDLIM7 0.216 PDZ and LIM domain 7 isoform 1 PDLIM3 0.198 PDZ and LIM domain protein 3 isoform a PDLIM5 0.198 PDZ and LIM domain 5 isoform b PDLIM1 0.192 PDZ and LIM domain 1 PDLIM3 0.181 PDZ and LIM domain protein 3 isoform b PDLIM5 0.172 PDZ and LIM domain 5 isoform e PDLIM7 0.166 PDZ and LIM domain 7 isoform 2 PDLIM4 0.140 PDZ and LIM domain 4 isoform 2 PDLIM4 0.140 PDZ and LIM domain 4 isoform 1 PDLIM2 0.104 PDZ and LIM domain 2 isoform 3 PDLIM2 0.104 PDZ and LIM domain 2 isoform 1 PDLIM2 0.104 PDZ and LIM domain 2 isoform 2 SYNPO2L 0.082 synaptopodin 2-like isoform a SYNPO2 0.069 synaptopodin 2 isoform c SYNPO2 0.069 synaptopodin 2 isoform b SYNPO2 0.069 synaptopodin 2 isoform a SHROOM4 0.047 shroom family member 4 SNTB1 0.047 basic beta 1 syntrophin SHROOM2 0.047 apical protein of Xenopus-like MAGI2 0.045 membrane associated guanylate kinase, WW and PDZ dom... PDZD7 0.045 PDZ domain containing 7 MAGI3 0.045 membrane-associated guanylate kinase-related 3 iso... LIN7B 0.043 lin-7 homolog B Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.