Guide to the Human Genome
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Name: LDB3 Sequence: fasta or formatted (727aa) NCBI GI: 45592959
Description:

LIM domain binding 3 isoform 1

Referenced in:

LIM Domain Proteins
Muscle

Other entries for this name:
alt prot [617aa] LIM domain binding 3 isoform 2
alt prot [330aa] LIM domain binding 3 isoform 3
alt prot [283aa] LIM domain binding 3 isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.1         88           3
 C cysteine            2.8         20           1
 D aspartate           3.3         24           2
 E glutamate           4.1         30           2
 F phenylalanine       3.2         23           2
 G glycine             5.6         41           2
 H histidine           2.2         16           1
 I isoleucine          2.9         21           1
 K lysine              4.0         29           2
 L leucine             5.9         43           2
 M methionine          1.7         12           1
 N asparagine          2.9         21           2
 P proline            13.5         98           2
 Q glutamine           4.0         29           1
 R arginine            4.4         32           2
 S serine             11.1         81           2
 T threonine           7.7         56           2
 V valine              4.4         32           2
 W tryptophan          0.8          6           1
 Y tyrosine            3.4         25           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   LIM domain binding 3 isoform 1 
LDB3                  0.631   LIM domain binding 3 isoform 2 
LDB3                  0.384   LIM domain binding 3 isoform 3 
LDB3                  0.217   LIM domain binding 3 isoform 4 
PDLIM5                0.202   PDZ and LIM domain 5 isoform a 
PDLIM5                0.200   PDZ and LIM domain 5 isoform b 
PDLIM7                0.186   PDZ and LIM domain 7 isoform 1 
PDLIM7                0.180   PDZ and LIM domain 7 isoform 2 
TGFB1I1               0.100   transforming growth factor beta 1 induced transcrip...
TGFB1I1               0.100   transforming growth factor beta 1 induced transcript...
PXN                   0.093   paxillin isoform 2 
PXN                   0.092   paxillin isoform 3 
LPXN                  0.091   leupaxin isoform 1 
LPXN                  0.091   leupaxin isoform 2 
PXN                   0.088   paxillin isoform 1 
PDLIM5                0.064   PDZ and LIM domain 5 isoform e 
FHL3                  0.064   four and a half LIM domains 3 
PDLIM5                0.062   PDZ and LIM domain 5 isoform d 
PDLIM1                0.062   PDZ and LIM domain 1 
PDLIM3                0.060   PDZ and LIM domain protein 3 isoform a 
PDLIM7                0.060   PDZ and LIM domain 7 isoform 4 
FBLIM1                0.060   filamin-binding LIM protein-1 isoform a 
FHL2                  0.059   four and a half LIM domains 2 
FHL2                  0.059   four and a half LIM domains 2 
FHL2                  0.059   four and a half LIM domains 2 
FHL2                  0.059   four and a half LIM domains 2 
FHL1                  0.059   four and a half LIM domains 1 isoform 2 
FHL1                  0.059   four and a half LIM domains 1 isoform 2 
FHL1                  0.059   four and a half LIM domains 1 isoform 3 
FHL1                  0.059   four and a half LIM domains 1 isoform 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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