PDLIM5 11465

Name: PDLIM5	Sequence: fasta or formatted (596aa)		NCBI GI: 197383077
Description: PDZ and LIM domain 5 isoform a		Referenced in: LIM Domain Proteins
Other entries for this name: alt prot [487aa] PDZ and LIM domain 5 isoform b alt prot [234aa] PDZ and LIM domain 5 isoform d alt prot [214aa] PDZ and LIM domain 5 isoform e
Composition: Amino acid Percentage Count Longest homopolymer A alanine 9.2 55 4 C cysteine 3.5 21 2 D aspartate 3.0 18 1 E glutamate 5.5 33 2 F phenylalanine 3.7 22 2 G glycine 7.2 43 2 H histidine 3.0 18 1 I isoleucine 3.5 21 1 K lysine 5.9 35 2 L leucine 5.5 33 1 M methionine 1.5 9 1 N asparagine 4.2 25 2 P proline 8.1 48 2 Q glutamine 4.5 27 2 R arginine 4.0 24 2 S serine 10.7 64 2 T threonine 7.0 42 2 V valine 6.7 40 2 W tryptophan 1.0 6 1 Y tyrosine 2.0 12 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PDZ and LIM domain 5 isoform a PDLIM5 0.664 PDZ and LIM domain 5 isoform b LDB3 0.335 LIM domain binding 3 isoform 2 PDLIM7 0.250 PDZ and LIM domain 7 isoform 1 LDB3 0.248 LIM domain binding 3 isoform 1 PDLIM7 0.247 PDZ and LIM domain 7 isoform 2 PDLIM5 0.146 PDZ and LIM domain 5 isoform d PDLIM5 0.143 PDZ and LIM domain 5 isoform e TGFB1I1 0.120 transforming growth factor beta 1 induced transcrip... TGFB1I1 0.120 transforming growth factor beta 1 induced transcript... LDB3 0.114 LIM domain binding 3 isoform 3 LPXN 0.108 leupaxin isoform 1 LPXN 0.108 leupaxin isoform 2 PXN 0.102 paxillin isoform 3 PXN 0.102 paxillin isoform 2 PXN 0.102 paxillin isoform 1 LDB3 0.097 LIM domain binding 3 isoform 4 LIMS2 0.088 LIM and senescent cell antigen-like domains 2 isofo... LIMS2 0.088 LIM and senescent cell antigen-like domains 2 isofo... LIMS2 0.088 LIM and senescent cell antigen-like domains 2 isofo... LIMS2 0.088 LIM and senescent cell antigen-like domains 2 isofor... LIMS1 0.085 LIM and senescent cell antigen-like domains 1 PDLIM7 0.083 PDZ and LIM domain 7 isoform 4 FHL3 0.078 four and a half LIM domains 3 PDLIM1 0.074 PDZ and LIM domain 1 FBLIM1 0.069 filamin-binding LIM protein-1 isoform a FHL2 0.067 four and a half LIM domains 2 FHL2 0.067 four and a half LIM domains 2 FHL2 0.067 four and a half LIM domains 2 FHL2 0.067 four and a half LIM domains 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.