PDLIM5 33649

Name: PDLIM5	Sequence: fasta or formatted (214aa)		NCBI GI: 58533161
Description: PDZ and LIM domain 5 isoform e		Referenced in: LIM Domain Proteins
Other entries for this name: alt prot [596aa] PDZ and LIM domain 5 isoform a alt prot [487aa] PDZ and LIM domain 5 isoform b alt prot [234aa] PDZ and LIM domain 5 isoform d
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.0 15 2 C cysteine 0.5 1 1 D aspartate 4.2 9 1 E glutamate 5.1 11 1 F phenylalanine 2.3 5 1 G glycine 6.5 14 2 H histidine 3.7 8 2 I isoleucine 5.1 11 1 K lysine 9.3 20 2 L leucine 6.5 14 1 M methionine 1.9 4 1 N asparagine 4.7 10 2 P proline 7.5 16 2 Q glutamine 4.7 10 1 R arginine 6.1 13 1 S serine 7.0 15 2 T threonine 7.9 17 2 V valine 6.5 14 2 W tryptophan 1.4 3 1 Y tyrosine 1.9 4 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PDZ and LIM domain 5 isoform e PDLIM5 0.917 PDZ and LIM domain 5 isoform d PDLIM5 0.733 PDZ and LIM domain 5 isoform b PDLIM7 0.449 PDZ and LIM domain 7 isoform 4 PDLIM5 0.417 PDZ and LIM domain 5 isoform a PDLIM7 0.367 PDZ and LIM domain 7 isoform 2 PDLIM7 0.352 PDZ and LIM domain 7 isoform 1 LDB3 0.228 LIM domain binding 3 isoform 3 LDB3 0.228 LIM domain binding 3 isoform 1 LDB3 0.223 LIM domain binding 3 isoform 4 LDB3 0.223 LIM domain binding 3 isoform 2 PDLIM1 0.194 PDZ and LIM domain 1 PDLIM4 0.163 PDZ and LIM domain 4 isoform 2 PDLIM4 0.163 PDZ and LIM domain 4 isoform 1 PDLIM3 0.150 PDZ and LIM domain protein 3 isoform b PDLIM3 0.150 PDZ and LIM domain protein 3 isoform a PDLIM2 0.148 PDZ and LIM domain 2 isoform 3 PDLIM2 0.148 PDZ and LIM domain 2 isoform 1 PDLIM2 0.148 PDZ and LIM domain 2 isoform 2 SYNPO2L 0.102 synaptopodin 2-like isoform a SYNPO2 0.097 synaptopodin 2 isoform c SYNPO2 0.097 synaptopodin 2 isoform b SYNPO2 0.097 synaptopodin 2 isoform a SHROOM4 0.083 shroom family member 4 MAGI3 0.075 membrane-associated guanylate kinase-related 3 iso... SHROOM2 0.070 apical protein of Xenopus-like MAGIX 0.070 MAGI family member, X-linked isoform b MAGIX 0.066 MAGI family member, X-linked isoform a SHROOM3 0.061 shroom family member 3 protein PDZD7 0.061 PDZ domain containing 7 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.