SHROOM2 28284

Name: SHROOM2	Sequence: fasta or formatted (1616aa)		NCBI GI: 4502175
Description: apical protein of Xenopus-like		Referenced in: PDZ Domain
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.8 142 4 C cysteine 1.3 21 1 D aspartate 5.6 91 2 E glutamate 8.0 130 2 F phenylalanine 2.1 34 2 G glycine 7.4 119 3 H histidine 3.2 52 2 I isoleucine 2.2 35 2 K lysine 5.3 86 3 L leucine 8.7 140 3 M methionine 0.8 13 1 N asparagine 1.4 22 2 P proline 10.1 163 7 Q glutamine 5.3 86 2 R arginine 7.7 125 3 S serine 11.0 177 4 T threonine 4.8 77 2 V valine 3.8 61 2 W tryptophan 1.2 19 1 Y tyrosine 1.4 23 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 apical protein of Xenopus-like SHROOM3 0.120 shroom family member 3 protein SHROOM4 0.069 shroom family member 4 SHROOM1 0.028 shroom family member 1 EIF4G1 0.012 eukaryotic translation initiation factor 4 gamma, 1 ... EIF4G1 0.012 eukaryotic translation initiation factor 4 gamma, 1 ... SRRM1 0.011 serine/arginine repetitive matrix 1 SRRM2 0.011 splicing coactivator subunit SRm300 SYNPO2 0.011 synaptopodin 2 isoform c SYNPO2 0.011 synaptopodin 2 isoform b SYNPO2 0.011 synaptopodin 2 isoform a PDLIM1 0.010 PDZ and LIM domain 1 PDLIM3 0.010 PDZ and LIM domain protein 3 isoform b PDLIM3 0.010 PDZ and LIM domain protein 3 isoform a SYNPO2L 0.009 synaptopodin 2-like isoform a SYNJ1 0.009 synaptojanin 1 isoform c PDLIM5 0.009 PDZ and LIM domain 5 isoform e PDLIM5 0.009 PDZ and LIM domain 5 isoform d PDLIM5 0.009 PDZ and LIM domain 5 isoform b PDLIM5 0.009 PDZ and LIM domain 5 isoform a REXO1 0.009 transcription elongation factor B polypeptide 3 bin... PDLIM4 0.009 PDZ and LIM domain 4 isoform 2 PDLIM4 0.009 PDZ and LIM domain 4 isoform 1 SNTA1 0.009 acidic alpha 1 syntrophin MAP7D1 0.008 MAP7 domain containing 1 FLJ22184 0.008 PREDICTED: hypothetical protein FLJ22184 PDLIM2 0.008 PDZ and LIM domain 2 isoform 3 PDLIM2 0.008 PDZ and LIM domain 2 isoform 1 PDLIM2 0.008 PDZ and LIM domain 2 isoform 2 RERE 0.008 atrophin-1 like protein isoform b Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.