Guide to the Human Genome
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Name: MAGI1 Sequence: fasta or formatted (1462aa) NCBI GI: 74272284
Description:

membrane associated guanylate kinase, WW and PDZ domain containing 1 isoform c

Referenced in:

Gap Junctions and Tight Junctions
PDZ Domain
WW Domain

Other entries for this name:
alt prot [1256aa] membrane associated guanylate kinase, WW and PDZ domain containin...
alt prot [1287aa] membrane associated guanylate kinase, WW and PDZ domain containin...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         80           4
 C cysteine            1.1         16           1
 D aspartate           5.3         77           2
 E glutamate           8.3        122           3
 F phenylalanine       2.3         34           2
 G glycine             8.8        128           5
 H histidine           3.0         44           2
 I isoleucine          3.8         56           2
 K lysine              5.6         82           2
 L leucine             6.6         96           3
 M methionine          1.0         14           1
 N asparagine          3.9         57           1
 P proline             7.6        111           2
 Q glutamine           5.9         86          20
 R arginine            8.0        117           4
 S serine              8.5        125           2
 T threonine           5.7         84           3
 V valine              6.6         96           2
 W tryptophan          0.5          8           1
 Y tyrosine            2.0         29           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   membrane associated guanylate kinase, WW and PDZ dom... 
MAGI1                 0.821   membrane associated guanylate kinase, WW and PDZ dom...
MAGI1                 0.819   membrane associated guanylate kinase, WW and PDZ dom...
MAGI2                 0.323   membrane associated guanylate kinase, WW and PDZ dom...
MAGI3                 0.313   membrane-associated guanylate kinase-related  3 iso...
MAGI3                 0.310   membrane-associated guanylate kinase-related  3 iso...
MPDZ                  0.036   multiple PDZ domain protein 
INADL                 0.032   InaD-like 
MAGIX                 0.025   MAGI family member, X-linked isoform a 
PTPN13                0.024   protein tyrosine phosphatase, non-receptor type 13 is...
MAGIX                 0.024   MAGI family member, X-linked isoform b 
PTPN13                0.024   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.024   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.022   protein tyrosine phosphatase, non-receptor type 13 i...
DLG4                  0.022   post-synaptic density protein 95 isoform 1 
DLG4                  0.022   post-synaptic density protein 95 isoform 2 
PARD3                 0.022   partitioning-defective protein 3 homolog 
WWC1                  0.022   WW and C2 domain containing 1 isoform 3 
WWC1                  0.022   WW and C2 domain containing 1 isoform 2 
WWC1                  0.022   WW and C2 domain containing 1 isoform 1 
WWC2                  0.021   WW and C2 domain containing 2 
WWP2                  0.021   WW domain containing E3 ubiquitin protein ligase 2 i...
LOC100170229          0.020   hypothetical protein LOC100170229 
SCRIB                 0.020   scribble isoform b 
SCRIB                 0.020   scribble isoform a 
LOC100286959          0.020   PREDICTED: hypothetical protein XP_002343921 
GRIP1                 0.020   glutamate receptor interacting protein 1 
PRPF4B                0.019   serine/threonine-protein kinase PRP4K 
LNX2                  0.019   ligand of numb-protein X 2 
DLG3                  0.019   synapse-associated protein 102 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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