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Search of human proteins with 239756028
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756028 PREDICTED: hypothetical protein [Homo sapiens]
(255 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756028 PREDICTED: hypothetical protein [Homo sapiens] 542 e-155
gi|169206162 PREDICTED: hypothetical protein [Homo sapiens] 142 4e-34
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 66 3e-11
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 65 4e-11
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 64 1e-10
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 64 1e-10
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 60 1e-09
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 60 1e-09
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 60 1e-09
gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo s... 59 4e-09
gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo s... 59 4e-09
gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo ... 59 4e-09
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens] 59 4e-09
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s... 57 1e-08
gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo s... 57 1e-08
gi|48762934 alpha 2 type I collagen [Homo sapiens] 56 3e-08
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 56 3e-08
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 56 3e-08
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 56 3e-08
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 56 3e-08
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 56 3e-08
gi|154759255 collagen, type XXVIII precursor [Homo sapiens] 56 3e-08
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 55 5e-08
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 55 6e-08
gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens] 55 6e-08
gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [H... 55 6e-08
gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho... 55 6e-08
gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Hom... 55 6e-08
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens] 55 6e-08
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens] 55 6e-08
>gi|239756028 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 542 bits (1397), Expect = e-155
Identities = 255/255 (100%), Positives = 255/255 (100%)
Query: 1 MDKVLNVNFTVEERGASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWG 60
MDKVLNVNFTVEERGASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWG
Sbjct: 1 MDKVLNVNFTVEERGASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWG 60
Query: 61 GRGAGSQSLPRGGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWL 120
GRGAGSQSLPRGGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWL
Sbjct: 61 GRGAGSQSLPRGGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWL 120
Query: 121 SVPASRGVAPPGAMGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGVGSESPP 180
SVPASRGVAPPGAMGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGVGSESPP
Sbjct: 121 SVPASRGVAPPGAMGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGVGSESPP 180
Query: 181 RWGCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPR 240
RWGCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPR
Sbjct: 181 RWGCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPR 240
Query: 241 CDGDPKSRGGRGAGS 255
CDGDPKSRGGRGAGS
Sbjct: 241 CDGDPKSRGGRGAGS 255
>gi|169206162 PREDICTED: hypothetical protein [Homo sapiens]
Length = 120
Score = 142 bits (357), Expect = 4e-34
Identities = 84/157 (53%), Positives = 92/157 (58%), Gaps = 39/157 (24%)
Query: 48 MGVLKARGGRAWGGRGAGSQSLPR--GGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQ 105
MGVL+ARG G PR GGAS CDGGP+S+G KRG L P L G ASP
Sbjct: 1 MGVLRARGE-------VGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLV-GVASPS 52
Query: 106 CDGGPKSQGGKSGWLSVPASRGVAPPGAMGILRARGGRGTGSQSPLPASLGVPPPPAMGV 165
CD GPKSQ GK GWLSVPAS LGVPPPPA+GV
Sbjct: 53 CDDGPKSQRGKRGWLSVPAS-----------------------------LGVPPPPAIGV 83
Query: 166 QRARGGRGVGSESPPRWGCLPTCDGGPKSQGGKRGWL 202
R+RGGRG GS+SPPR GCLP CDGGP+S+ KRG L
Sbjct: 84 LRSRGGRGAGSQSPPRGGCLPPCDGGPESRERKRGCL 120
Score = 100 bits (248), Expect = 2e-21
Identities = 59/116 (50%), Positives = 67/116 (57%), Gaps = 4/116 (3%)
Query: 134 MGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGVGSESPPRWGCL-PTCDGGP 192
MG+LRARG G P +G PP G +RG + SP G P+CD GP
Sbjct: 1 MGVLRARGEVGLALS---PRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGP 57
Query: 193 KSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCDGDPKSR 248
KSQ GKRGWLSVPAS V P PA+GVLR+RGGRG GG P CDG P+SR
Sbjct: 58 KSQRGKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDGGPESR 113
Score = 92.0 bits (227), Expect = 4e-19
Identities = 48/77 (62%), Positives = 54/77 (70%), Gaps = 5/77 (6%)
Query: 16 ASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGAS 75
ASP GPKSQ GK GW S+ AS VPPPPA+GVL++R GGRGAGSQS PRGG
Sbjct: 49 ASPSCDDGPKSQRGKRGWLSVPASLGVPPPPAIGVLRSR-----GGRGAGSQSPPRGGCL 103
Query: 76 ARCDGGPKSQGGKRGWL 92
CDGGP+S+ KRG L
Sbjct: 104 PPCDGGPESRERKRGCL 120
Score = 65.1 bits (157), Expect = 6e-11
Identities = 43/94 (45%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 163 MGVQRARGGRGVGSESPPRWGCLPTCDGGPKSQGGKRGWLSVPAS-WVVSPTPAMGVLRA 221
MGV RARG G+ G P CDGGP+S+G KRG L P V SP+ G
Sbjct: 1 MGVLRARGEVGLALSPRLVGGASPPCDGGPESRGRKRGCLLSPCLVGVASPSCDDGPKSQ 60
Query: 222 RGGRGVALSPYLMGGASPRCDGDPKSRGGRGAGS 255
RG RG P +G P G +SRGGRGAGS
Sbjct: 61 RGKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGS 94
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 66.2 bits (160), Expect = 3e-11
Identities = 80/262 (30%), Positives = 95/262 (36%), Gaps = 49/262 (18%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLP--RGGAS 75
PPG GP+ Q G G+ P P + G G G G Q P G
Sbjct: 565 PPGPSGPRGQPGVMGF---------PGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETG 615
Query: 76 ARCDGGPKSQGGKRGWLSVPS------LPRGGASPQCDGGPKSQG--GKSGWLSVPASRG 127
+ GP GG +G P LP G P +G P G G +G P +G
Sbjct: 616 PQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKG 675
Query: 128 VA-------PPGAMGILRARGGRGTGSQSPLPASLGVPPPPAM----GVQRARGGR-GVG 175
A PPG G RGG G + G P PP G+Q G R G+G
Sbjct: 676 DAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLG 735
Query: 176 SESPPRWGCLPTCDGGPKSQG-----GKRGWLSVPASWVVSPTPAMGVLRARGGRGVALS 230
S P P GGP + G G RG P + P PA G +G +
Sbjct: 736 SPGPKGDKGEP---GGPGADGVPGKDGPRG----PTGPIGPPGPA----GQPGDKGEGGA 784
Query: 231 PYLMGGASPRCDGDPKSRGGRG 252
P L G A PR G P RG G
Sbjct: 785 PGLPGIAGPR--GSPGERGETG 804
Score = 63.2 bits (152), Expect = 2e-10
Identities = 70/244 (28%), Positives = 89/244 (36%), Gaps = 30/244 (12%)
Query: 19 PGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGR-GAGSQSLPRGGASAR 77
PG GP+ G G PP PA G + GG G + PRG R
Sbjct: 755 PGKDGPRGPTGPIG----------PPGPA----GQPGDKGEGGAPGLPGIAGPRGSPGER 800
Query: 78 CDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGVA-PPGAMGI 136
+ GP G G P GG + G K +GG G P G A PPG G+
Sbjct: 801 GETGPPGPAGFPGAPGQNGEP-GGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGV 859
Query: 137 LRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGG--RGVGSESPPRWGCLPTCDG---- 190
RG G + P + G+P PP G G + PP G
Sbjct: 860 KGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGV 919
Query: 191 -GPKSQGGKRGWLSVPASWVVSPTPA-MGVLRARGGRGVALSPYLMGGASPRCDGDPKSR 248
GPK G+ G P + P +G+ G RG+A P + G PR G P +
Sbjct: 920 SGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPG---PR--GSPGPQ 974
Query: 249 GGRG 252
G +G
Sbjct: 975 GVKG 978
Score = 62.0 bits (149), Expect = 5e-10
Identities = 81/270 (30%), Positives = 95/270 (35%), Gaps = 37/270 (13%)
Query: 13 ERG-ASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGG-RGAGSQSLP 70
ERG A PG+ G K + GK G S P A G A G R G G + P
Sbjct: 448 ERGEAGIPGVPGAKGEDGKDG--SPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGP 505
Query: 71 RGGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQG--------GKSGWLSV 122
G A GP+ G+ G VP P P GGP S G G+SG
Sbjct: 506 AGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGP 565
Query: 123 PASRGV-APPGAMGILRARGGRGTGSQSPLPASLGVP----PPPAMGVQRARGGRG---- 173
P G PG MG +G G ++ G P PP G +G G
Sbjct: 566 PGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGP 625
Query: 174 ------VGSESPPRWGCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPA----MGVLRARG 223
G P LP GGP + GK G P G RG
Sbjct: 626 GGDKGDTGPPGPQGLQGLPG-TGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERG 684
Query: 224 GRGVALSPYLMGGASPRCDGDPKSRGGRGA 253
G+A +P L GGA P P GG+GA
Sbjct: 685 PPGLAGAPGLRGGAGP-----PGPEGGKGA 709
Score = 62.0 bits (149), Expect = 5e-10
Identities = 81/281 (28%), Positives = 99/281 (35%), Gaps = 62/281 (22%)
Query: 13 ERGA-------SPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGA- 64
ERGA PPG+ GP G +G PP GV RG GG GA
Sbjct: 826 ERGAPGEKGEGGPPGVAGPPGGSGPAG-----------PPGPQGVKGERGSP--GGPGAA 872
Query: 65 ---GSQSLPRGGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDG--GPKSQGGKSGW 119
G++ LP G + + GP G G P +P G GPK G+ G
Sbjct: 873 GFPGARGLP-GPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGE 931
Query: 120 LSVPASRGV-APPGAMGILRARGGRGTGSQSPLPASLGVP----------PPPAMGVQRA 168
P ++G PG +GI G RG +P G P P A G+
Sbjct: 932 KGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGE 991
Query: 169 RGGRG-------------VGSESPPRWGCLPTCDGGPKSQG--GKRGWLSVP-ASWVVSP 212
RG G G + P LP DG P +G G+ G P A P
Sbjct: 992 RGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGP 1051
Query: 213 TPAMGVLRARGGRGVALSPYLMGGASPRCDGDPKSRGGRGA 253
+G G RG + G A P G P G RGA
Sbjct: 1052 PGPVGPAGKSGDRGES------GPAGPA--GAPGPAGSRGA 1084
Score = 53.5 bits (127), Expect = 2e-07
Identities = 81/271 (29%), Positives = 100/271 (36%), Gaps = 54/271 (19%)
Query: 13 ERGA-SPPGIGGP---------KSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRA--WG 60
ERG PPGI GP K G G P L G G
Sbjct: 241 ERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMG 300
Query: 61 GRGA----GSQSLPRGGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDG-----GPK 111
RGA G LP G A AR + G + G+ G P SP G G
Sbjct: 301 PRGAPGERGRPGLP-GAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSP 359
Query: 112 SQGGKSGWLSVPASRGVA----PPGAMGILRARGGRGTGSQSPLPASLGV-----PPPPA 162
G G P +G A PPG GI + GG+G + +P + G+ PP PA
Sbjct: 360 GSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPA 419
Query: 163 MGVQRARGGRGVGSESPPRWGCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRAR 222
G A G RG G+ P + G + GP+ G+RG +P GV A+
Sbjct: 420 -GANGAPGLRG-GAGEPGKNGA--KGEPGPR---GERGEAGIP-----------GVPGAK 461
Query: 223 GGRGVALSPYLMGGASPRCDGDPKSRGGRGA 253
G G SP P +G P + G RGA
Sbjct: 462 GEDGKDGSP-----GEPGANGLPGAAGERGA 487
Score = 48.5 bits (114), Expect = 6e-06
Identities = 53/171 (30%), Positives = 64/171 (37%), Gaps = 20/171 (11%)
Query: 19 PGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRA-WGGRGAGSQSLPRGGASAR 77
PG GP GKSG S P A G +RG G RG ++ RG A +
Sbjct: 1049 PGPPGPVGPAGKSG--DRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIK 1106
Query: 78 CD-------GGPKSQG--GKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGV 128
G P S G G++G + P G A P+ GP GK G P +
Sbjct: 1107 GHRGFPGNPGAPGSPGPAGQQGAIGSP----GPAGPRGPVGPSGPPGKDGTSGHPGP--I 1160
Query: 129 APPGAMGILRARGGRGTGSQSPLPASLGVP--PPPAMGVQRARGGRGVGSE 177
PPG G RG G+ P G P P P G A G+G E
Sbjct: 1161 GPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAAIAGIGGE 1211
Score = 41.6 bits (96), Expect = 7e-04
Identities = 50/182 (27%), Positives = 62/182 (34%), Gaps = 19/182 (10%)
Query: 19 PGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGG-RGAGSQSLPRGGASAR 77
PG G + + G G + A PP +G G R G G P G A
Sbjct: 1028 PGGKGDRGENGSPG--APGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAP 1085
Query: 78 CDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQG--GKSGWLSVPASRGVAPPGAMG 135
GP+ G+ G + P G P S G G+ G + P P G G
Sbjct: 1086 GPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSP-----GPAGPRG 1140
Query: 136 ILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGV-GSESPPRWGCLPTCDGGPKS 194
+ G G S P +G P P RG RG GSE P P G P +
Sbjct: 1141 PVGPSGPPGKDGTSGHPGPIGPPGP--------RGNRGERGSEGSPGHPGQPGPPGPPGA 1192
Query: 195 QG 196
G
Sbjct: 1193 PG 1194
Score = 40.0 bits (92), Expect = 0.002
Identities = 47/181 (25%), Positives = 62/181 (34%), Gaps = 31/181 (17%)
Query: 86 GGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGVA-------PPGAMGILR 138
GG G+ P+ P G P G G G+ P G A PPGA+G
Sbjct: 167 GGLAGYPG-PAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSG 225
Query: 139 ARGGRGTGSQSPLPASLGVPPPPAM-------GVQRARGGRGVGSESPPRWGCLPTCDGG 191
G G + P G+P PP + G +G RG + + G
Sbjct: 226 PAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEK---------G 276
Query: 192 PKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCDGDPKSRGGR 251
G +G +P A G + RG G P L G A R G+ +RG
Sbjct: 277 ETGAPGLKGENGLPGE-----NGAPGPMGPRGAPGERGRPGLPGAAGAR--GNDGARGSD 329
Query: 252 G 252
G
Sbjct: 330 G 330
Score = 32.0 bits (71), Expect = 0.54
Identities = 50/195 (25%), Positives = 61/195 (31%), Gaps = 42/195 (21%)
Query: 71 RGGASARCDGGPKSQGGKRGWLSVPSLPRGGASP-------QCDGGPKSQGGKSGWLSVP 123
+G + D GP G+ G +P P SP C GP++ + + S
Sbjct: 102 QGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQ--YDSYD 159
Query: 124 ASRGVAP------PGAMGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGVGSE 177
GVA PG G G GT P S G PP Q G
Sbjct: 160 VKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQ-------AGPS 212
Query: 178 SPPRWGCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGA 237
PP P GP GK G P G RG+ P + G A
Sbjct: 213 GPPG----PPGAIGPSGPAGKDGESGRPG--------------RPGERGLPGPPGIKGPA 254
Query: 238 SPRCDGDPKSRGGRG 252
G P +G RG
Sbjct: 255 G--IPGFPGMKGHRG 267
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 65.5 bits (158), Expect = 4e-11
Identities = 79/257 (30%), Positives = 90/257 (35%), Gaps = 47/257 (18%)
Query: 16 ASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGR-GAGSQSLPRGGA 74
A PPG GP G G ++ A P G +G R G G + P G
Sbjct: 331 AGPPGPTGPAGPPGFPG--AVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNP 388
Query: 75 SARCDGGPKSQGGKRGWLSVPSLP--RGGASPQCDGGPKSQGGKSGWLSVPASRG----- 127
A G K G G P P RG + PQ GGP G SG P S+G
Sbjct: 389 GADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAK 448
Query: 128 --------VAPPGAMGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGVGSESP 179
PPG G RG RG P G+P PP G + G RG
Sbjct: 449 GEPGPVGVQGPPGPAGEEGKRGARGE------PGPTGLPGPP--GERGGPGSRG------ 494
Query: 180 PRWGCLPTCDG--GPKSQGGKRGWLSVPASWVVSPTPA--MGVLRARGGRGVALSPYLMG 235
P DG GPK G+RG PA SP A G G +G+ SP
Sbjct: 495 -----FPGADGVAGPKGPAGERG-SPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSP---- 544
Query: 236 GASPRCDGDPKSRGGRG 252
SP DG G G
Sbjct: 545 -GSPGPDGKTGPPGPAG 560
Score = 62.4 bits (150), Expect = 4e-10
Identities = 82/270 (30%), Positives = 94/270 (34%), Gaps = 43/270 (15%)
Query: 13 ERGAS-PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGG-RGAGSQSLP 70
ERG PPG GP+ G G + A P A G A G + G RGA P
Sbjct: 684 ERGVQGPPGPAGPRGANGAPG--NDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGP 741
Query: 71 RGGASARCDGGPKSQGGKRGWLSVPSL--------PRGGASPQCDGGPKSQGGKSGWLSV 122
+G R D GPK G G V L P G + + GP G +G
Sbjct: 742 KGD---RGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGA 798
Query: 123 PASRG----------VAPPGAMGILRARGGRGTGSQS-----PLPASLGVPPPPA--MGV 165
P RG PPGA G A+G G P PA PP P +G
Sbjct: 799 PGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGA 858
Query: 166 QRARGGRGVGSESPPRWGCLPTCDG--GPKSQGGKRGWLSVPASWVVSPTPAMGVLRARG 223
A+G R GS PP P G GP G G P P G RG
Sbjct: 859 PGAKGAR--GSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPP-----GPAGKEGGKGPRG 911
Query: 224 GRGVALSPYLMGGASPRCDGDPKSRGGRGA 253
G A P +G P G +G GA
Sbjct: 912 ETGPAGRPGEVGPPGP--PGPAGEKGSPGA 939
Score = 58.5 bits (140), Expect = 5e-09
Identities = 74/250 (29%), Positives = 89/250 (35%), Gaps = 24/250 (9%)
Query: 16 ASPPGIGGP------KSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSL 69
A PPG GP K G++G P PP K G A G GA
Sbjct: 892 AGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPG-ADGPAGAPGTPG 950
Query: 70 PRGGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGVA 129
P+G A R G Q G+RG+ +P P G Q G + G G + P G
Sbjct: 951 PQGIAGQRGVVGLPGQRGERGFPGLPG-PSGEPGKQGPSGASGERGPPGPMGPPGLAG-- 1007
Query: 130 PPGAMGILRARGGRGTGSQSPLPASLG-------VPPPPAMGVQRARGGRGVGSESPPRW 182
PPG G A G G+ + P + G PP A G A G G +S R
Sbjct: 1008 PPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRG 1067
Query: 183 GCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCD 242
P GP G RG PA P G +G RG+ G P
Sbjct: 1068 ETGPAGPAGPVGPVGARG----PAG-PQGPRGDKGETGEQGDRGIKGHRGFSGLQGP--P 1120
Query: 243 GDPKSRGGRG 252
G P S G +G
Sbjct: 1121 GPPGSPGEQG 1130
Score = 57.8 bits (138), Expect = 9e-09
Identities = 77/267 (28%), Positives = 93/267 (34%), Gaps = 48/267 (17%)
Query: 20 GIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGG-RGAGSQSLPRGGASARC 78
G GP + GK G +P PP RGG G GA + P+G A R
Sbjct: 458 GPPGPAGEEGKRGARGEPGPTGLPGPPG-----ERGGPGSRGFPGADGVAGPKGPAGERG 512
Query: 79 DGGPKSQGGKRGWLSVPS---------LPRGGASPQCDG-----GPKSQGGKSGWLSVPA 124
GP G G P L SP DG GP Q G+ G P
Sbjct: 513 SPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPG 572
Query: 125 SRGVAPPGAMGILRARGGRGTGSQSPLPASLGVPPPPA----------MGVQRARGGRGV 174
+RG A G++ G +G + GVP PP G Q G G
Sbjct: 573 ARGQA-----GVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGP 627
Query: 175 GSE-------SPPRWGCLPTCDGGPKSQGGKRGWLSVPAS-WVVSPTPAMGVLRARGGRG 226
E P + LP GP + GK G VP P+ A G G RG
Sbjct: 628 AGERGEQGPAGSPGFQGLPG-PAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERG 686
Query: 227 VALSPYLMGGASPR-CDGDPKSRGGRG 252
V P G A PR +G P + G +G
Sbjct: 687 VQGPP---GPAGPRGANGAPGNDGAKG 710
Score = 53.5 bits (127), Expect = 2e-07
Identities = 82/287 (28%), Positives = 100/287 (34%), Gaps = 55/287 (19%)
Query: 13 ERGAS-PPGIGGPKSQWGKSGWFSIAASWRVPPPP-------------------AMGVLK 52
E GA PPG GP + G+ G +P P A G
Sbjct: 615 EAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSG 674
Query: 53 ARGGRAWGGRGAGSQSLPRGGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKS 112
ARG R + G G Q P G A R G G +G P P +P G P
Sbjct: 675 ARGERGFPGE-RGVQG-PPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMP-- 730
Query: 113 QGGKSGWLSVPASRG----VAPPGAMGILRARGGRG-TGSQSPLPASLGVP--------- 158
G+ G +P +G P GA G G RG TG P P G P
Sbjct: 731 --GERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGP-PGPAGAPGDKGESGPS 787
Query: 159 -PPPAMGVQRARGGRG-VGSESPPRWGCLPTCDGGPKSQG-----GKRGWLSVPA----S 207
P G + A G RG G P + P DG P ++G G +G P +
Sbjct: 788 GPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPA 847
Query: 208 WVVSPTPAMGVLRARGGRGVALSPYLMG--GASPRCDGDPKSRGGRG 252
P +G A+G RG A P G GA+ R G P G G
Sbjct: 848 GPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRV-GPPGPSGNAG 893
Score = 50.1 bits (118), Expect = 2e-06
Identities = 66/244 (27%), Positives = 81/244 (33%), Gaps = 27/244 (11%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASAR 77
P G GP + G+ G P PP G+ G G P+G
Sbjct: 198 PQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKP-GRPGERGPPGPQGARGLP 256
Query: 78 CDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGV-------AP 130
G G RG+ + +G A P GPK + G G P G
Sbjct: 257 GTAGLPGMKGHRGFSGLDGA-KGDAGP---AGPKGEPGSPGENGAPGQMGPRGLPGERGR 312
Query: 131 PGAMGILRARGGRG-TGSQSPLPASLGVPPPPAMGVQRARGGRGVGSESPPRWGCLP--- 186
PGA G ARG G TG+ P P G PP G A G +G PR P
Sbjct: 313 PGAPGPAGARGNDGATGAAGP-PGPTGPAGPP--GFPGAVGAKGEAGPQGPRGSEGPQGV 369
Query: 187 TCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCDGDPK 246
+ GP G G P + G A G G+A +P G P P+
Sbjct: 370 RGEPGPPGPAGAAGPAGNPGA-----DGQPGAKGANGAPGIAGAPGFPGARGP---SGPQ 421
Query: 247 SRGG 250
GG
Sbjct: 422 GPGG 425
Score = 50.1 bits (118), Expect = 2e-06
Identities = 84/266 (31%), Positives = 99/266 (37%), Gaps = 58/266 (21%)
Query: 13 ERGA-SPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPR 71
ERG PPG GP + G++G + PP PA G RG + G G Q LP
Sbjct: 597 ERGVPGPPGAVGPAGKDGEAGA-------QGPPGPA-GPAGERGEQGPAG-SPGFQGLPG 647
Query: 72 GGASARCDGGPKSQG-----------GKRGWLSVPSL-----PRGGASPQ-CDGGPKSQG 114
G P QG G RG P P G A P+ +G P + G
Sbjct: 648 PAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDG 707
Query: 115 --GKSGWLSVPASRGVAPPGAMGILRARGGRGTGSQSPLPASLG----VPPPPAMGVQRA 168
G +G P S+G PG G+ RG G LP G P A G
Sbjct: 708 AKGDAGAPGAPGSQGA--PGLQGMPGERGAAG------LPGPKGDRGDAGPKGADGSPGK 759
Query: 169 RGGRGV-GSESPPRWGCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGV 227
G RG+ G PP P G K + G G PA PT A G A G RG
Sbjct: 760 DGVRGLTGPIGPPG----PAGAPGDKGESGPSG----PA----GPTGARG---APGDRGE 804
Query: 228 ALSPYLMGGAS-PRCDGDPKSRGGRG 252
P G A P DG P ++G G
Sbjct: 805 PGPPGPAGFAGPPGADGQPGAKGEPG 830
Score = 48.9 bits (115), Expect = 4e-06
Identities = 72/267 (26%), Positives = 89/267 (33%), Gaps = 35/267 (13%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVP-------PPPAMGVLKARGGRAW-GGRGAGSQSL 69
P G G K + G SG + P PP G G G +G +
Sbjct: 774 PAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAG 833
Query: 70 PRGGASARCDGGPKSQGGKRGWLSVPSLP--RGGASPQCDGGPKSQGGKSGWLSVPASRG 127
+G A GP G G + P RG A P G G +G + P G
Sbjct: 834 AKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPP---GATGFPGAAGRVGPPGPSG 890
Query: 128 VA----PPGAMGILRARGGRGTGSQSPLPASLGVPPPPA----MGVQRARGGRGVGSESP 179
A PPG G +G RG + P +G P PP G A G G
Sbjct: 891 NAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPG 950
Query: 180 PRWGCLPTCDGGPKSQGGKRGWLSVPA-SWVVSPTPAMGVLRARGGRGVALSPYLMG--- 235
P+ G Q G+RG+ +P S G RG G P L G
Sbjct: 951 PQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPG 1010
Query: 236 -----GA-----SPRCDGDPKSRGGRG 252
GA SP DG P ++G RG
Sbjct: 1011 ESGREGAPGAEGSPGRDGSPGAKGDRG 1037
Score = 42.0 bits (97), Expect = 5e-04
Identities = 55/193 (28%), Positives = 67/193 (34%), Gaps = 17/193 (8%)
Query: 70 PRGGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGK-----SGWLSVPA 124
P+G R GP G+ G P LP G P GP GG S +
Sbjct: 113 PKGDTGPRGPRGPAGPPGRDGIPGQPGLP-GPPGPPGPPGPPGLGGNFAPQLSYGYDEKS 171
Query: 125 SRGVAPPGAMGILRARGGRGTGSQSPLPASLGVPPPPA-MGVQRARGGRGV-GSESPPRW 182
+ G++ PG MG G RG P G PP G A G G G PP
Sbjct: 172 TGGISVPGPMG---PSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPG- 227
Query: 183 GCLPTCDGGPKSQGGKRGWLSVPASWVVSPTP-AMGVLRARGGRGVALSPYLMGGASPR- 240
D G + G+ G P P G+ +G RG + G A P
Sbjct: 228 ---KNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAG 284
Query: 241 CDGDPKSRGGRGA 253
G+P S G GA
Sbjct: 285 PKGEPGSPGENGA 297
Score = 40.4 bits (93), Expect = 0.002
Identities = 43/151 (28%), Positives = 53/151 (35%), Gaps = 20/151 (13%)
Query: 19 PGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASARC 78
PG GP GKSG + P +G + G RG PRG
Sbjct: 1051 PGAPGPVGPAGKSG--DRGETGPAGPAGPVGPV--------GARGPAGPQGPRGDKGETG 1100
Query: 79 DGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGVAP-------- 130
+ G + G RG+ + P SP + GP G +G P S G AP
Sbjct: 1101 EQGDRGIKGHRGFSGLQGPPGPPGSPG-EQGPSGASGPAGPRGPPGSAG-APGKDGLNGL 1158
Query: 131 PGAMGILRARGGRGTGSQSPLPASLGVPPPP 161
PG +G RG G P G P PP
Sbjct: 1159 PGPIGPPGPRGRTGDAGPVGPPGPPGPPGPP 1189
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 64.3 bits (155), Expect = 1e-10
Identities = 73/248 (29%), Positives = 94/248 (37%), Gaps = 39/248 (15%)
Query: 12 EERGASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPR 71
E A PPG GP + G+ G + +P PP G GG+ G Q +P
Sbjct: 637 ETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPP--------GPPGEGGK-PGDQGVP- 686
Query: 72 GGASARCDGGPKSQGGKRGWLSVPSL-----PRGGASPQCDGGPKSQGGKSGWLSVPASR 126
G A A GP+ + G G P PRG GPK G +G P ++
Sbjct: 687 GEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAG---PPGAQ 743
Query: 127 GVAPPGAMGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGV-GSESPPRWGCL 185
G PPG G+ RG G +G P G GGRG+ G PP
Sbjct: 744 G--PPGLQGMPGERGAAGIAGPKGDRGDVGEKGPE--GAPGKDGGRGLTGPIGPP----- 794
Query: 186 PTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGAS-PRCDGD 244
GP G++G + P P + G A G RG P G A P DG
Sbjct: 795 -----GPAGANGEKGEVGPP-----GPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQ 844
Query: 245 PKSRGGRG 252
P ++G +G
Sbjct: 845 PGAKGEQG 852
Score = 56.6 bits (135), Expect = 2e-08
Identities = 80/275 (29%), Positives = 98/275 (35%), Gaps = 54/275 (19%)
Query: 16 ASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGR-AWGGRGAGSQSLPRGGA 74
A P G GP + GK G P +G + G R A G RG Q G
Sbjct: 476 AGPQGAPGPAGEEGKRGARG--------EPGGVGPIGPPGERGAPGNRGFPGQDGLAGPK 527
Query: 75 SARCDGGPKSQGGKRGWLSVPSLP--------------RGGASPQCDGGPKSQGGKSGWL 120
A + GP G +G P P G A PQ GP G+ G
Sbjct: 528 GAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRP 587
Query: 121 SVPASRGV-APPGAMGI---LRARGGRGTGSQSPLPASLGV--------------PPPPA 162
P +G PG MG A G G + LP + G+ PP PA
Sbjct: 588 GPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPA 647
Query: 163 MGVQRARGGRGVGSESPPRWGCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRAR 222
G RG + G+ P + LP GP +GGK G VP A G++ R
Sbjct: 648 -GPAGERGEQ--GAPGPSGFQGLPG-PPGPPGEGGKPGDQGVPGE-----AGAPGLVGPR 698
Query: 223 GGRGV---ALSPYLMGGASPR-CDGDPKSRGGRGA 253
G RG SP G PR G P + G +GA
Sbjct: 699 GERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGA 733
Score = 55.8 bits (133), Expect = 3e-08
Identities = 69/237 (29%), Positives = 83/237 (35%), Gaps = 49/237 (20%)
Query: 19 PGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASARC 78
PG GPK G +G PP A G +G G RGA + P+G
Sbjct: 725 PGTDGPKGASGPAG-----------PPGAQGPPGLQGMP--GERGAAGIAGPKGDRGDVG 771
Query: 79 DGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGVAPPGAMGILR 138
+ GP+ GK G RG P GP G+ G V PPG G
Sbjct: 772 EKGPEGAPGKDGG-------RGLTGPIGPPGPAGANGEKG--------EVGPPGPAGSAG 816
Query: 139 ARGGRGTGSQSPLPASLG-VPPPPAMGVQRARGGRGVGSESPPRWGCLPTCDGGPKSQGG 197
ARG G ++ P G PP A G A+G +G + G P QG
Sbjct: 817 ARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDA--------GAPGPQG- 867
Query: 198 KRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMG--GASPRCDGDPKSRGGRG 252
S P GV +G RG P G GA+ R G P S G G
Sbjct: 868 --------PSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRV-GPPGSNGNPG 915
Score = 53.1 bits (126), Expect = 2e-07
Identities = 83/280 (29%), Positives = 101/280 (36%), Gaps = 64/280 (22%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASAR 77
PPG G + G+ G PP PA G ARG A G RG P G A
Sbjct: 793 PPGPAGANGEKGEVG----------PPGPA-GSAGARG--APGERGETGPPGPAGFAGPP 839
Query: 78 -CDGGPKSQG-----GKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGVAPP 131
DG P ++G G++G P P+G P GP+ G +G ++G PP
Sbjct: 840 GADGQPGAKGEQGEAGQKGDAGAPG-PQG---PSGAPGPQGPTGVTGPKGARGAQG--PP 893
Query: 132 GAMGILRARGGRGTGSQSPLPASLGVPPPPAM-GVQRARGGRG----------VGSESPP 180
GA G A G G + P G P P G + ARG G G PP
Sbjct: 894 GATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPP 953
Query: 181 RWGCLPTCDG--------GPKSQGGKRGWLSVPA-----SWVVSPTP--------AMGVL 219
P DG GP+ G+RG + +P + P P A G
Sbjct: 954 GEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGAS 1013
Query: 220 RARGGRGVALSPYLMGGA-------SPRCDGDPKSRGGRG 252
RG G P L G A SP DG P G G
Sbjct: 1014 GDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAG 1053
Score = 51.6 bits (122), Expect = 7e-07
Identities = 75/273 (27%), Positives = 91/273 (33%), Gaps = 51/273 (18%)
Query: 13 ERGASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRG 72
ERG P G+ GPK G G P P + + GR G G + P G
Sbjct: 532 ERG--PSGLAGPKGANGDPGR---------PGEPGLPGARGLTGRP-GDAGPQGKVGPSG 579
Query: 73 GASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGV---- 128
GP G RG V P P+ G + G+ G P RG+
Sbjct: 580 APGEDGRPGPPGPQGARGQPGVMGFP----GPKGANGEPGKAGEKGLPGAPGLRGLPGKD 635
Query: 129 ------APPGAMGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGVGSES---- 178
PPG G RG +G S G P PP G + G +GV E+
Sbjct: 636 GETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGK--PGDQGVPGEAGAPG 693
Query: 179 ---PPRWGCLPTCDGGPKSQG--GKRGWLSVP-------ASWVVSPTPAMGVLRARGGRG 226
P P G P +QG G RG P AS P A G +G G
Sbjct: 694 LVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPG 753
Query: 227 VALSPYLMGGASPRCD-------GDPKSRGGRG 252
+ + G R D G P GGRG
Sbjct: 754 ERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRG 786
Score = 47.0 bits (110), Expect = 2e-05
Identities = 50/174 (28%), Positives = 63/174 (36%), Gaps = 24/174 (13%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASAR 77
PPG GP GK G A A G + G G RG PRG
Sbjct: 1072 PPGSPGPAGPTGKQGDRGEAG--------AQGPMGPSGPA--GARGIQGPQGPRGDKGEA 1121
Query: 78 CDGGPKSQGGKRGWLSVPSLP--------RGGASPQCDGGPKSQGGKSGWLSVPASRGVA 129
+ G + G RG+ + LP +G + P GP+ G G + G+
Sbjct: 1122 GEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGI- 1180
Query: 130 PPGAMGILRARGGRG-TGSQSP--LPASLGVPPPPAMGV-QRARGGRGVGSESP 179
PG +G RG G TG P P G P PP G+ A G G + P
Sbjct: 1181 -PGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGP 1233
Score = 46.2 bits (108), Expect = 3e-05
Identities = 73/261 (27%), Positives = 86/261 (32%), Gaps = 41/261 (15%)
Query: 19 PGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASARC 78
PG GP G +G P P K G G RG PRG
Sbjct: 350 PGPAGPPGPVGPAGG---------PGFPGAPGAKGEAGPT-GARGPEGAQGPRGEPGTPG 399
Query: 79 DGGPKSQGGKRGWLSVPSLPRGGASPQCDG-----GPKSQGGKSGWLSVPASRG-VAPPG 132
GP G G +P +P G GP+ G G +G PG
Sbjct: 400 SPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPG 459
Query: 133 AMGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGR----GVGSESPPRWGCLPTC 188
G +G +G P PA P PA G + RG R GVG PP P
Sbjct: 460 IAGFKGEQGPKG----EPGPAGPQGAPGPA-GEEGKRGARGEPGGVGPIGPPGERGAPGN 514
Query: 189 DG--------GPKSQGGKRGWLSVPASWVVSPTPAM----GVLRARG--GRGVALSPYLM 234
G GPK G+RG + + P G+ ARG GR P
Sbjct: 515 RGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGK 574
Query: 235 GGAS--PRCDGDPKSRGGRGA 253
G S P DG P G +GA
Sbjct: 575 VGPSGAPGEDGRPGPPGPQGA 595
Score = 45.1 bits (105), Expect = 6e-05
Identities = 70/261 (26%), Positives = 89/261 (34%), Gaps = 51/261 (19%)
Query: 16 ASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGAS 75
A+ G GPK Q G+ G + PP P +G + PRG
Sbjct: 94 ATASGQPGPKGQKGEPGDIKDIVGPKGPPGP---------------QGPAGEQGPRGD-- 136
Query: 76 ARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDG--GPKSQGG------------KSGWLS 121
R D G K G RG P P P G GP GG K+G
Sbjct: 137 -RGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQ 195
Query: 122 VPASRGVAPPGAMGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGVGSESPPR 181
+ +G P G MG G G + G P P GV G RG PP
Sbjct: 196 LGVMQG--PMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEP--GVSGPMGPRG-----PPG 246
Query: 182 WGCLPTCDG--GPKSQGGKRGWLSVPASWVVSPTPAMGVLRAR-------GGRGVALSPY 232
P DG G + G+RG + TP + ++ G +G A +P
Sbjct: 247 PPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPG 306
Query: 233 LMG-GASPRCDGDPKSRGGRG 252
+ G SP +G P G RG
Sbjct: 307 VKGESGSPGENGSPGPMGPRG 327
Score = 45.1 bits (105), Expect = 6e-05
Identities = 48/173 (27%), Positives = 66/173 (38%), Gaps = 23/173 (13%)
Query: 19 PGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGR-GAGSQSLPRGGASAR 77
PG GP G G +A + +G+ RG R + G G + +G A
Sbjct: 959 PGDDGPSGAEGPPGPQGLAGQRGI-----VGLPGQRGERGFPGLPGPSGEPGKQGAPGAS 1013
Query: 78 CDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQG--------GKSGWLSVPASRGVA 129
D GP G G P SP DG P G G++G + P +
Sbjct: 1014 GDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGA--PG 1071
Query: 130 PPGAMGILRARGGRG----TGSQSPLPASLGVPPPPAMGVQRARGGRGVGSES 178
PPG+ G G +G G+Q P+ S P A G+Q +G RG E+
Sbjct: 1072 PPGSPGPAGPTGKQGDRGEAGAQGPMGPS---GPAGARGIQGPQGPRGDKGEA 1121
Score = 40.8 bits (94), Expect = 0.001
Identities = 54/203 (26%), Positives = 65/203 (32%), Gaps = 36/203 (17%)
Query: 70 PRGGASARCDGGPKSQGGKRGWLS---VPSLPRGGASPQCDGGPKSQGGKSGWLSVPASR 126
P A+A GPK Q G+ G + P P G P + GP+ G G P R
Sbjct: 90 PTDLATASGQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPR 149
Query: 127 GVAPPGAMGILRARGGRGTGSQSPLPASLGVPPPPAM----------GVQRARGGRGVGS 176
G G GT P G P PP + G GG +G
Sbjct: 150 G-----------RDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGV 198
Query: 177 ESPPRWGCLPTCDGGPKSQGGKRGWLSVP-------ASWVVSPTPAMGVLRARGGRGVAL 229
P P GP G +G+ P S + P G G G A
Sbjct: 199 MQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAG 258
Query: 230 SPYLMGGASPRCDGDPKSRGGRG 252
P G A R G P +G RG
Sbjct: 259 KP---GKAGER--GPPGPQGARG 276
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 64.3 bits (155), Expect = 1e-10
Identities = 73/248 (29%), Positives = 94/248 (37%), Gaps = 39/248 (15%)
Query: 12 EERGASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPR 71
E A PPG GP + G+ G + +P PP G GG+ G Q +P
Sbjct: 568 ETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPP--------GPPGEGGK-PGDQGVP- 617
Query: 72 GGASARCDGGPKSQGGKRGWLSVPSL-----PRGGASPQCDGGPKSQGGKSGWLSVPASR 126
G A A GP+ + G G P PRG GPK G +G P ++
Sbjct: 618 GEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAG---PPGAQ 674
Query: 127 GVAPPGAMGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGV-GSESPPRWGCL 185
G PPG G+ RG G +G P G GGRG+ G PP
Sbjct: 675 G--PPGLQGMPGERGAAGIAGPKGDRGDVGEKGPE--GAPGKDGGRGLTGPIGPP----- 725
Query: 186 PTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGAS-PRCDGD 244
GP G++G + P P + G A G RG P G A P DG
Sbjct: 726 -----GPAGANGEKGEVGPP-----GPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQ 775
Query: 245 PKSRGGRG 252
P ++G +G
Sbjct: 776 PGAKGEQG 783
Score = 56.6 bits (135), Expect = 2e-08
Identities = 80/275 (29%), Positives = 98/275 (35%), Gaps = 54/275 (19%)
Query: 16 ASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGR-AWGGRGAGSQSLPRGGA 74
A P G GP + GK G P +G + G R A G RG Q G
Sbjct: 407 AGPQGAPGPAGEEGKRGARG--------EPGGVGPIGPPGERGAPGNRGFPGQDGLAGPK 458
Query: 75 SARCDGGPKSQGGKRGWLSVPSLP--------------RGGASPQCDGGPKSQGGKSGWL 120
A + GP G +G P P G A PQ GP G+ G
Sbjct: 459 GAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRP 518
Query: 121 SVPASRGV-APPGAMGI---LRARGGRGTGSQSPLPASLGV--------------PPPPA 162
P +G PG MG A G G + LP + G+ PP PA
Sbjct: 519 GPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPA 578
Query: 163 MGVQRARGGRGVGSESPPRWGCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRAR 222
G RG + G+ P + LP GP +GGK G VP A G++ R
Sbjct: 579 -GPAGERGEQ--GAPGPSGFQGLPG-PPGPPGEGGKPGDQGVPGE-----AGAPGLVGPR 629
Query: 223 GGRGV---ALSPYLMGGASPR-CDGDPKSRGGRGA 253
G RG SP G PR G P + G +GA
Sbjct: 630 GERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGA 664
Score = 55.8 bits (133), Expect = 3e-08
Identities = 69/237 (29%), Positives = 83/237 (35%), Gaps = 49/237 (20%)
Query: 19 PGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASARC 78
PG GPK G +G PP A G +G G RGA + P+G
Sbjct: 656 PGTDGPKGASGPAG-----------PPGAQGPPGLQGMP--GERGAAGIAGPKGDRGDVG 702
Query: 79 DGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGVAPPGAMGILR 138
+ GP+ GK G RG P GP G+ G V PPG G
Sbjct: 703 EKGPEGAPGKDGG-------RGLTGPIGPPGPAGANGEKG--------EVGPPGPAGSAG 747
Query: 139 ARGGRGTGSQSPLPASLG-VPPPPAMGVQRARGGRGVGSESPPRWGCLPTCDGGPKSQGG 197
ARG G ++ P G PP A G A+G +G + G P QG
Sbjct: 748 ARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDA--------GAPGPQG- 798
Query: 198 KRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMG--GASPRCDGDPKSRGGRG 252
S P GV +G RG P G GA+ R G P S G G
Sbjct: 799 --------PSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRV-GPPGSNGNPG 846
Score = 53.1 bits (126), Expect = 2e-07
Identities = 83/280 (29%), Positives = 101/280 (36%), Gaps = 64/280 (22%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASAR 77
PPG G + G+ G PP PA G ARG A G RG P G A
Sbjct: 724 PPGPAGANGEKGEVG----------PPGPA-GSAGARG--APGERGETGPPGPAGFAGPP 770
Query: 78 -CDGGPKSQG-----GKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGVAPP 131
DG P ++G G++G P P+G P GP+ G +G ++G PP
Sbjct: 771 GADGQPGAKGEQGEAGQKGDAGAPG-PQG---PSGAPGPQGPTGVTGPKGARGAQG--PP 824
Query: 132 GAMGILRARGGRGTGSQSPLPASLGVPPPPAM-GVQRARGGRG----------VGSESPP 180
GA G A G G + P G P P G + ARG G G PP
Sbjct: 825 GATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPP 884
Query: 181 RWGCLPTCDG--------GPKSQGGKRGWLSVPA-----SWVVSPTP--------AMGVL 219
P DG GP+ G+RG + +P + P P A G
Sbjct: 885 GEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGAS 944
Query: 220 RARGGRGVALSPYLMGGA-------SPRCDGDPKSRGGRG 252
RG G P L G A SP DG P G G
Sbjct: 945 GDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAG 984
Score = 51.6 bits (122), Expect = 7e-07
Identities = 75/273 (27%), Positives = 91/273 (33%), Gaps = 51/273 (18%)
Query: 13 ERGASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRG 72
ERG P G+ GPK G G P P + + GR G G + P G
Sbjct: 463 ERG--PSGLAGPKGANGDPGR---------PGEPGLPGARGLTGRP-GDAGPQGKVGPSG 510
Query: 73 GASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGV---- 128
GP G RG V P P+ G + G+ G P RG+
Sbjct: 511 APGEDGRPGPPGPQGARGQPGVMGFP----GPKGANGEPGKAGEKGLPGAPGLRGLPGKD 566
Query: 129 ------APPGAMGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGVGSES---- 178
PPG G RG +G S G P PP G + G +GV E+
Sbjct: 567 GETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGK--PGDQGVPGEAGAPG 624
Query: 179 ---PPRWGCLPTCDGGPKSQG--GKRGWLSVP-------ASWVVSPTPAMGVLRARGGRG 226
P P G P +QG G RG P AS P A G +G G
Sbjct: 625 LVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPG 684
Query: 227 VALSPYLMGGASPRCD-------GDPKSRGGRG 252
+ + G R D G P GGRG
Sbjct: 685 ERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRG 717
Score = 47.0 bits (110), Expect = 2e-05
Identities = 50/174 (28%), Positives = 63/174 (36%), Gaps = 24/174 (13%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASAR 77
PPG GP GK G A A G + G G RG PRG
Sbjct: 1003 PPGSPGPAGPTGKQGDRGEAG--------AQGPMGPSGPA--GARGIQGPQGPRGDKGEA 1052
Query: 78 CDGGPKSQGGKRGWLSVPSLP--------RGGASPQCDGGPKSQGGKSGWLSVPASRGVA 129
+ G + G RG+ + LP +G + P GP+ G G + G+
Sbjct: 1053 GEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGI- 1111
Query: 130 PPGAMGILRARGGRG-TGSQSP--LPASLGVPPPPAMGV-QRARGGRGVGSESP 179
PG +G RG G TG P P G P PP G+ A G G + P
Sbjct: 1112 -PGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGP 1164
Score = 46.2 bits (108), Expect = 3e-05
Identities = 73/261 (27%), Positives = 86/261 (32%), Gaps = 41/261 (15%)
Query: 19 PGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASARC 78
PG GP G +G P P K G G RG PRG
Sbjct: 281 PGPAGPPGPVGPAGG---------PGFPGAPGAKGEAGPT-GARGPEGAQGPRGEPGTPG 330
Query: 79 DGGPKSQGGKRGWLSVPSLPRGGASPQCDG-----GPKSQGGKSGWLSVPASRG-VAPPG 132
GP G G +P +P G GP+ G G +G PG
Sbjct: 331 SPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPG 390
Query: 133 AMGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGR----GVGSESPPRWGCLPTC 188
G +G +G P PA P PA G + RG R GVG PP P
Sbjct: 391 IAGFKGEQGPKG----EPGPAGPQGAPGPA-GEEGKRGARGEPGGVGPIGPPGERGAPGN 445
Query: 189 DG--------GPKSQGGKRGWLSVPASWVVSPTPAM----GVLRARG--GRGVALSPYLM 234
G GPK G+RG + + P G+ ARG GR P
Sbjct: 446 RGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGK 505
Query: 235 GGAS--PRCDGDPKSRGGRGA 253
G S P DG P G +GA
Sbjct: 506 VGPSGAPGEDGRPGPPGPQGA 526
Score = 45.1 bits (105), Expect = 6e-05
Identities = 48/173 (27%), Positives = 66/173 (38%), Gaps = 23/173 (13%)
Query: 19 PGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGR-GAGSQSLPRGGASAR 77
PG GP G G +A + +G+ RG R + G G + +G A
Sbjct: 890 PGDDGPSGAEGPPGPQGLAGQRGI-----VGLPGQRGERGFPGLPGPSGEPGKQGAPGAS 944
Query: 78 CDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQG--------GKSGWLSVPASRGVA 129
D GP G G P SP DG P G G++G + P +
Sbjct: 945 GDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGA--PG 1002
Query: 130 PPGAMGILRARGGRG----TGSQSPLPASLGVPPPPAMGVQRARGGRGVGSES 178
PPG+ G G +G G+Q P+ S P A G+Q +G RG E+
Sbjct: 1003 PPGSPGPAGPTGKQGDRGEAGAQGPMGPS---GPAGARGIQGPQGPRGDKGEA 1052
Score = 43.5 bits (101), Expect = 2e-04
Identities = 68/254 (26%), Positives = 86/254 (33%), Gaps = 51/254 (20%)
Query: 23 GPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASARCDGGP 82
GPK Q G+ G + PP P +G + PRG R D G
Sbjct: 32 GPKGQKGEPGDIKDIVGPKGPPGP---------------QGPAGEQGPRGD---RGDKGE 73
Query: 83 KSQGGKRGWLSVPSLPRGGASPQCDG--GPKSQGG------------KSGWLSVPASRGV 128
K G RG P P P G GP GG K+G + +G
Sbjct: 74 KGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQG- 132
Query: 129 APPGAMGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGVGSESPPRWGCLPTC 188
P G MG G G + G P P GV G RG PP P
Sbjct: 133 -PMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEP--GVSGPMGPRG-----PPGPPGKPGD 184
Query: 189 DG--GPKSQGGKRGWLSVPASWVVSPTPAMGVLRAR-------GGRGVALSPYLMG-GAS 238
DG G + G+RG + TP + ++ G +G A +P + G S
Sbjct: 185 DGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGS 244
Query: 239 PRCDGDPKSRGGRG 252
P +G P G RG
Sbjct: 245 PGENGSPGPMGPRG 258
Score = 40.8 bits (94), Expect = 0.001
Identities = 55/205 (26%), Positives = 65/205 (31%), Gaps = 42/205 (20%)
Query: 74 ASARCDG------GPKSQGGKRGWLSV---PSLPRGGASPQCDGGPKSQGGKSGWLSVPA 124
A RC G GPK Q G+ G + P P G P + GP+ G G P
Sbjct: 19 AVLRCQGQDVRQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPG 78
Query: 125 SRGVAPPGAMGILRARGGRGTGSQSPLPASLGVPPPPAM----------GVQRARGGRGV 174
RG G GT P G P PP + G GG +
Sbjct: 79 PRG-----------RDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQL 127
Query: 175 GSESPPRWGCLPTCDGGPKSQGGKRGWLSVP-------ASWVVSPTPAMGVLRARGGRGV 227
G P P GP G +G+ P S + P G G G
Sbjct: 128 GVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGE 187
Query: 228 ALSPYLMGGASPRCDGDPKSRGGRG 252
A P G A R G P +G RG
Sbjct: 188 AGKP---GKAGER--GPPGPQGARG 207
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 60.5 bits (145), Expect = 1e-09
Identities = 80/262 (30%), Positives = 101/262 (38%), Gaps = 44/262 (16%)
Query: 20 GIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAW----GGRGAGSQSLPRGGAS 75
G+ G K + G+ G+ P G + +G R G RG P+G A
Sbjct: 784 GLKGSKGEKGEDGF-----------PGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAG 832
Query: 76 ARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSV---PASRGVA--- 129
D GP Q G++G L VP LP G Q GPK G G+ +RGVA
Sbjct: 833 PTGDPGPSGQAGEKGKLGVPGLP-GYPGRQ---GPKGSTGFPGFPGANGEKGARGVAGKP 888
Query: 130 -PPGAMGILRARGGRG----TGSQSPLPASLGVPPPPAMGVQRARGGRG-VGSESPPRWG 183
P G G RG RG TG P S G PP G + +G +G VG P
Sbjct: 889 GPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPP 948
Query: 184 CLPTCDG-----GPKSQGGKRGWLSVPASWVV----SPTPAMGVLRARGGRGVALSPYLM 234
P DG G + + G +G P V PT G + RG G P
Sbjct: 949 GPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQ 1008
Query: 235 G--GASPR--CDGDPKSRGGRG 252
G GA+ + GDP +G G
Sbjct: 1009 GLPGAAGKEGAKGDPGPQGISG 1030
Score = 60.1 bits (144), Expect = 2e-09
Identities = 81/300 (27%), Positives = 102/300 (34%), Gaps = 76/300 (25%)
Query: 19 PGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASARC 78
PG+ G K G+ G P PP ++ G G RG ++ PRG R
Sbjct: 618 PGLPGDKGHRGERG------PQGPPGPPGDDGMRGEDGEI-GPRGLPGEAGPRGLLGPRG 670
Query: 79 DGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRG-VAPPGAM--- 134
G Q G G + P P+G PQ + GP Q G G +P +G + PPG
Sbjct: 671 TPGAPGQPGMAG-VDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQ 729
Query: 135 ---------GILRARGGRGTGSQSPLPASLGVPPPPA-------MGVQRARGGRGV---- 174
G G G QS +LG P P GV+ A G RG+
Sbjct: 730 GKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSK 789
Query: 175 ------------------------------GSESP--PRWGCLPTCDGGPKSQGGKRGWL 202
G + P P+ PT D GP Q G++G L
Sbjct: 790 GEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKL 849
Query: 203 SVPA--SWVVSPTPA--------MGVLRARGGRGVALSPYLMGGASPRCDGDPKSRGGRG 252
VP + P G +G RGVA P G P G SRG RG
Sbjct: 850 GVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGP--TGPRGSRGARG 907
Score = 58.5 bits (140), Expect = 5e-09
Identities = 73/259 (28%), Positives = 94/259 (36%), Gaps = 49/259 (18%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASAR 77
PPG GP+ G +G A PP ++G + G + G G P G A
Sbjct: 1232 PPGPPGPRGPQGPNG-----ADGPQGPPGSVGSVGGVGEK--GEPGEAGNPGPPGEAGV- 1283
Query: 78 CDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQG--GKSGWLSVPASRGVAPPGAMG 135
GGPK + G++G P P G P G G G + P G PPG G
Sbjct: 1284 --GGPKGERGEKGEAGPPG---AAGPPGAKGPPGDDGPKGNPGPVGFPGDPG--PPGEPG 1336
Query: 136 ILRARGGRGTGSQSPLPASLGVP----------------PPPAMGVQRARGGRG----VG 175
G G + P G P PP A G + +G +G G
Sbjct: 1337 PAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAG 1396
Query: 176 SESPP-RWGCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLM 234
+E PP + G P GP + G G +P P G+ A G G P M
Sbjct: 1397 AEGPPGKTG--PVGPQGPAGKPGPEGLRGIP-----GPVGEQGLPGAAGQDG---PPGPM 1446
Query: 235 GGAS-PRCDGDPKSRGGRG 252
G P GDP S+G +G
Sbjct: 1447 GPPGLPGLKGDPGSKGEKG 1465
Score = 54.3 bits (129), Expect = 1e-07
Identities = 64/239 (26%), Positives = 89/239 (37%), Gaps = 17/239 (7%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAW--GGRGAGSQSLPRGGAS 75
PPG G K G+ G A V P + G G +G + +G
Sbjct: 1094 PPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKG 1153
Query: 76 ARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGV-APPGAM 134
+ + GP G +G + P + G P GP+ Q G G +RG PPG +
Sbjct: 1154 DKGENGPPGPPGLQGPVGAPGIAGGDGEP----GPRGQQGMFGQKGDEGARGFPGPPGPI 1209
Query: 135 GILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGV-GSESPPRWGCLPTCDG-GP 192
G+ G G ++ +G P PP G + +G G G + PP G + + G G
Sbjct: 1210 GLQGLPGPPGEKGENGDVGPMGPPGPP--GPRGPQGPNGADGPQGPP--GSVGSVGGVGE 1265
Query: 193 KSQGGKRGWLSVPA-SWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCDGDPKSRGG 250
K + G+ G P + V P G G G A P G P D PK G
Sbjct: 1266 KGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPP---GAKGPPGDDGPKGNPG 1321
Score = 50.8 bits (120), Expect = 1e-06
Identities = 62/245 (25%), Positives = 82/245 (33%), Gaps = 42/245 (17%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLP--RGGAS 75
P G+ GP+ G++G P PP G Q LP G
Sbjct: 977 PGGVVGPQGPTGETGPIGERGHPGPPGPP------------------GEQGLPGAAGKEG 1018
Query: 76 ARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGVAPPGAMG 135
A+ D GP+ GK G + P P G P +GG+ PPG +G
Sbjct: 1019 AKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQ---------GPPGPVG 1069
Query: 136 ILRARGGRGTGSQSPLPASLGVPPPP-------AMGVQRARGGRGVGSESPPRWGCLPTC 188
RG GT LP G PP A G + +G G P P
Sbjct: 1070 SPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAG 1129
Query: 189 DGGPKSQGGKRGWLSVPA-SWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCDGDPKS 247
G + G +G + P G G +G +P + GG DG+P
Sbjct: 1130 PAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGG-----DGEPGP 1184
Query: 248 RGGRG 252
RG +G
Sbjct: 1185 RGQQG 1189
Score = 47.4 bits (111), Expect = 1e-05
Identities = 58/224 (25%), Positives = 73/224 (32%), Gaps = 29/224 (12%)
Query: 44 PPPAMGVL----KARGGRAWGGRGAGSQSLPRGGASARCDGGPKSQGGKRGWLSVPSLPR 99
PP MG+ G + G +G P+G + GP + GKRG
Sbjct: 542 PPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGAD---- 597
Query: 100 GGASPQCDGGPKSQGGKSGWLSVPASRG-------VAPPGAMGILRARGGRGTGSQSPLP 152
GG + G K G G +P +G PPG G RG G LP
Sbjct: 598 GGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLP 657
Query: 153 ASLG----VPPPPAMGVQRARGGRGVGSESPPRWGCLPTCDGGPKSQGGKRGWLSVPASW 208
G + P G G GV P+ P + GP Q G G +P
Sbjct: 658 GEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPG-- 715
Query: 209 VVSPTPAMGVLRARGGRGVALSPYLMGGASPRCDGDPKSRGGRG 252
G + G +G P L G P DG P G G
Sbjct: 716 ------PQGPIGPPGEKGPQGKPGLAG--LPGADGPPGHPGKEG 751
Score = 40.0 bits (92), Expect = 0.002
Identities = 47/167 (28%), Positives = 61/167 (36%), Gaps = 17/167 (10%)
Query: 13 ERGAS-PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPR 71
E GA PPG GP G +G +P P L G+ G LP
Sbjct: 1394 EAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLP- 1452
Query: 72 GGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQG--GKSGWLSVPASRG-V 128
+ D G K + G G + + P G P +QG G G +P G +
Sbjct: 1453 ---GLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPL 1509
Query: 129 APPGAMGILRARGGRGT-GSQSP--------LPASLGVPPPPAMGVQ 166
PPG G+ +G +G GS P LP G P PP +Q
Sbjct: 1510 GPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQ 1556
Score = 32.7 bits (73), Expect = 0.32
Identities = 46/180 (25%), Positives = 63/180 (35%), Gaps = 27/180 (15%)
Query: 87 GKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRG-VAPPGAMGILRARGGRGT 145
G++G P++ G + GP G +G + P +G PPG G RG
Sbjct: 435 GEKGQKGEPAVVEPGMLVE---GPPGPAGPAGIMGPPGLQGPTGPPGDPG------DRGP 485
Query: 146 GSQSPLPASLGVPPPPAMGVQRARGGRGVGSESPPRWGCLPTCDG-------------GP 192
+ LP + G+P PP + G GS+ P GP
Sbjct: 486 PGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGP 545
Query: 193 KSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCDGDPKSRGGRG 252
G+ G + P S G +G RGV P G R G P + GGRG
Sbjct: 546 MGLTGRPGPVGGPGS--SGAKGESGDPGPQGPRGVQGPPGPTGKPGKR--GRPGADGGRG 601
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 60.5 bits (145), Expect = 1e-09
Identities = 80/262 (30%), Positives = 101/262 (38%), Gaps = 44/262 (16%)
Query: 20 GIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAW----GGRGAGSQSLPRGGAS 75
G+ G K + G+ G+ P G + +G R G RG P+G A
Sbjct: 733 GLKGSKGEKGEDGF-----------PGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAG 781
Query: 76 ARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSV---PASRGVA--- 129
D GP Q G++G L VP LP G Q GPK G G+ +RGVA
Sbjct: 782 PTGDPGPSGQAGEKGKLGVPGLP-GYPGRQ---GPKGSTGFPGFPGANGEKGARGVAGKP 837
Query: 130 -PPGAMGILRARGGRG----TGSQSPLPASLGVPPPPAMGVQRARGGRG-VGSESPPRWG 183
P G G RG RG TG P S G PP G + +G +G VG P
Sbjct: 838 GPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPP 897
Query: 184 CLPTCDG-----GPKSQGGKRGWLSVPASWVV----SPTPAMGVLRARGGRGVALSPYLM 234
P DG G + + G +G P V PT G + RG G P
Sbjct: 898 GPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQ 957
Query: 235 G--GASPR--CDGDPKSRGGRG 252
G GA+ + GDP +G G
Sbjct: 958 GLPGAAGKEGAKGDPGPQGISG 979
Score = 60.1 bits (144), Expect = 2e-09
Identities = 81/300 (27%), Positives = 102/300 (34%), Gaps = 76/300 (25%)
Query: 19 PGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASARC 78
PG+ G K G+ G P PP ++ G G RG ++ PRG R
Sbjct: 567 PGLPGDKGHRGERG------PQGPPGPPGDDGMRGEDGEI-GPRGLPGEAGPRGLLGPRG 619
Query: 79 DGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRG-VAPPGAM--- 134
G Q G G + P P+G PQ + GP Q G G +P +G + PPG
Sbjct: 620 TPGAPGQPGMAG-VDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQ 678
Query: 135 ---------GILRARGGRGTGSQSPLPASLGVPPPPA-------MGVQRARGGRGV---- 174
G G G QS +LG P P GV+ A G RG+
Sbjct: 679 GKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSK 738
Query: 175 ------------------------------GSESP--PRWGCLPTCDGGPKSQGGKRGWL 202
G + P P+ PT D GP Q G++G L
Sbjct: 739 GEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKL 798
Query: 203 SVPA--SWVVSPTPA--------MGVLRARGGRGVALSPYLMGGASPRCDGDPKSRGGRG 252
VP + P G +G RGVA P G P G SRG RG
Sbjct: 799 GVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGP--TGPRGSRGARG 856
Score = 58.5 bits (140), Expect = 5e-09
Identities = 73/259 (28%), Positives = 94/259 (36%), Gaps = 49/259 (18%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASAR 77
PPG GP+ G +G A PP ++G + G + G G P G A
Sbjct: 1181 PPGPPGPRGPQGPNG-----ADGPQGPPGSVGSVGGVGEK--GEPGEAGNPGPPGEAGV- 1232
Query: 78 CDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQG--GKSGWLSVPASRGVAPPGAMG 135
GGPK + G++G P P G P G G G + P G PPG G
Sbjct: 1233 --GGPKGERGEKGEAGPPG---AAGPPGAKGPPGDDGPKGNPGPVGFPGDPG--PPGEPG 1285
Query: 136 ILRARGGRGTGSQSPLPASLGVP----------------PPPAMGVQRARGGRG----VG 175
G G + P G P PP A G + +G +G G
Sbjct: 1286 PAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAG 1345
Query: 176 SESPP-RWGCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLM 234
+E PP + G P GP + G G +P P G+ A G G P M
Sbjct: 1346 AEGPPGKTG--PVGPQGPAGKPGPEGLRGIP-----GPVGEQGLPGAAGQDG---PPGPM 1395
Query: 235 GGAS-PRCDGDPKSRGGRG 252
G P GDP S+G +G
Sbjct: 1396 GPPGLPGLKGDPGSKGEKG 1414
Score = 54.3 bits (129), Expect = 1e-07
Identities = 64/239 (26%), Positives = 89/239 (37%), Gaps = 17/239 (7%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAW--GGRGAGSQSLPRGGAS 75
PPG G K G+ G A V P + G G +G + +G
Sbjct: 1043 PPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKG 1102
Query: 76 ARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGV-APPGAM 134
+ + GP G +G + P + G P GP+ Q G G +RG PPG +
Sbjct: 1103 DKGENGPPGPPGLQGPVGAPGIAGGDGEP----GPRGQQGMFGQKGDEGARGFPGPPGPI 1158
Query: 135 GILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGV-GSESPPRWGCLPTCDG-GP 192
G+ G G ++ +G P PP G + +G G G + PP G + + G G
Sbjct: 1159 GLQGLPGPPGEKGENGDVGPMGPPGPP--GPRGPQGPNGADGPQGPP--GSVGSVGGVGE 1214
Query: 193 KSQGGKRGWLSVPA-SWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCDGDPKSRGG 250
K + G+ G P + V P G G G A P G P D PK G
Sbjct: 1215 KGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPP---GAKGPPGDDGPKGNPG 1270
Score = 50.8 bits (120), Expect = 1e-06
Identities = 62/245 (25%), Positives = 82/245 (33%), Gaps = 42/245 (17%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLP--RGGAS 75
P G+ GP+ G++G P PP G Q LP G
Sbjct: 926 PGGVVGPQGPTGETGPIGERGHPGPPGPP------------------GEQGLPGAAGKEG 967
Query: 76 ARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGVAPPGAMG 135
A+ D GP+ GK G + P P G P +GG+ PPG +G
Sbjct: 968 AKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQ---------GPPGPVG 1018
Query: 136 ILRARGGRGTGSQSPLPASLGVPPPP-------AMGVQRARGGRGVGSESPPRWGCLPTC 188
RG GT LP G PP A G + +G G P P
Sbjct: 1019 SPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAG 1078
Query: 189 DGGPKSQGGKRGWLSVPA-SWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCDGDPKS 247
G + G +G + P G G +G +P + GG DG+P
Sbjct: 1079 PAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGG-----DGEPGP 1133
Query: 248 RGGRG 252
RG +G
Sbjct: 1134 RGQQG 1138
Score = 47.4 bits (111), Expect = 1e-05
Identities = 58/224 (25%), Positives = 73/224 (32%), Gaps = 29/224 (12%)
Query: 44 PPPAMGVL----KARGGRAWGGRGAGSQSLPRGGASARCDGGPKSQGGKRGWLSVPSLPR 99
PP MG+ G + G +G P+G + GP + GKRG
Sbjct: 491 PPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGAD---- 546
Query: 100 GGASPQCDGGPKSQGGKSGWLSVPASRG-------VAPPGAMGILRARGGRGTGSQSPLP 152
GG + G K G G +P +G PPG G RG G LP
Sbjct: 547 GGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLP 606
Query: 153 ASLG----VPPPPAMGVQRARGGRGVGSESPPRWGCLPTCDGGPKSQGGKRGWLSVPASW 208
G + P G G GV P+ P + GP Q G G +P
Sbjct: 607 GEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPG-- 664
Query: 209 VVSPTPAMGVLRARGGRGVALSPYLMGGASPRCDGDPKSRGGRG 252
G + G +G P L G P DG P G G
Sbjct: 665 ------PQGPIGPPGEKGPQGKPGLAG--LPGADGPPGHPGKEG 700
Score = 40.0 bits (92), Expect = 0.002
Identities = 47/167 (28%), Positives = 61/167 (36%), Gaps = 17/167 (10%)
Query: 13 ERGAS-PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPR 71
E GA PPG GP G +G +P P L G+ G LP
Sbjct: 1343 EAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLP- 1401
Query: 72 GGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQG--GKSGWLSVPASRG-V 128
+ D G K + G G + + P G P +QG G G +P G +
Sbjct: 1402 ---GLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPL 1458
Query: 129 APPGAMGILRARGGRGT-GSQSP--------LPASLGVPPPPAMGVQ 166
PPG G+ +G +G GS P LP G P PP +Q
Sbjct: 1459 GPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQ 1505
Score = 32.7 bits (73), Expect = 0.32
Identities = 46/180 (25%), Positives = 63/180 (35%), Gaps = 27/180 (15%)
Query: 87 GKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRG-VAPPGAMGILRARGGRGT 145
G++G P++ G + GP G +G + P +G PPG G RG
Sbjct: 384 GEKGQKGEPAVVEPGMLVE---GPPGPAGPAGIMGPPGLQGPTGPPGDPG------DRGP 434
Query: 146 GSQSPLPASLGVPPPPAMGVQRARGGRGVGSESPPRWGCLPTCDG-------------GP 192
+ LP + G+P PP + G GS+ P GP
Sbjct: 435 PGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGP 494
Query: 193 KSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCDGDPKSRGGRG 252
G+ G + P S G +G RGV P G R G P + GGRG
Sbjct: 495 MGLTGRPGPVGGPGS--SGAKGESGDPGPQGPRGVQGPPGPTGKPGKR--GRPGADGGRG 550
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 60.5 bits (145), Expect = 1e-09
Identities = 80/262 (30%), Positives = 101/262 (38%), Gaps = 44/262 (16%)
Query: 20 GIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAW----GGRGAGSQSLPRGGAS 75
G+ G K + G+ G+ P G + +G R G RG P+G A
Sbjct: 772 GLKGSKGEKGEDGF-----------PGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAG 820
Query: 76 ARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSV---PASRGVA--- 129
D GP Q G++G L VP LP G Q GPK G G+ +RGVA
Sbjct: 821 PTGDPGPSGQAGEKGKLGVPGLP-GYPGRQ---GPKGSTGFPGFPGANGEKGARGVAGKP 876
Query: 130 -PPGAMGILRARGGRG----TGSQSPLPASLGVPPPPAMGVQRARGGRG-VGSESPPRWG 183
P G G RG RG TG P S G PP G + +G +G VG P
Sbjct: 877 GPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPP 936
Query: 184 CLPTCDG-----GPKSQGGKRGWLSVPASWVV----SPTPAMGVLRARGGRGVALSPYLM 234
P DG G + + G +G P V PT G + RG G P
Sbjct: 937 GPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQ 996
Query: 235 G--GASPR--CDGDPKSRGGRG 252
G GA+ + GDP +G G
Sbjct: 997 GLPGAAGKEGAKGDPGPQGISG 1018
Score = 60.1 bits (144), Expect = 2e-09
Identities = 81/300 (27%), Positives = 102/300 (34%), Gaps = 76/300 (25%)
Query: 19 PGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASARC 78
PG+ G K G+ G P PP ++ G G RG ++ PRG R
Sbjct: 606 PGLPGDKGHRGERG------PQGPPGPPGDDGMRGEDGEI-GPRGLPGEAGPRGLLGPRG 658
Query: 79 DGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRG-VAPPGAM--- 134
G Q G G + P P+G PQ + GP Q G G +P +G + PPG
Sbjct: 659 TPGAPGQPGMAG-VDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQ 717
Query: 135 ---------GILRARGGRGTGSQSPLPASLGVPPPPA-------MGVQRARGGRGV---- 174
G G G QS +LG P P GV+ A G RG+
Sbjct: 718 GKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSK 777
Query: 175 ------------------------------GSESP--PRWGCLPTCDGGPKSQGGKRGWL 202
G + P P+ PT D GP Q G++G L
Sbjct: 778 GEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKL 837
Query: 203 SVPA--SWVVSPTPA--------MGVLRARGGRGVALSPYLMGGASPRCDGDPKSRGGRG 252
VP + P G +G RGVA P G P G SRG RG
Sbjct: 838 GVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGP--TGPRGSRGARG 895
Score = 58.5 bits (140), Expect = 5e-09
Identities = 73/259 (28%), Positives = 94/259 (36%), Gaps = 49/259 (18%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASAR 77
PPG GP+ G +G A PP ++G + G + G G P G A
Sbjct: 1220 PPGPPGPRGPQGPNG-----ADGPQGPPGSVGSVGGVGEK--GEPGEAGNPGPPGEAGV- 1271
Query: 78 CDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQG--GKSGWLSVPASRGVAPPGAMG 135
GGPK + G++G P P G P G G G + P G PPG G
Sbjct: 1272 --GGPKGERGEKGEAGPPG---AAGPPGAKGPPGDDGPKGNPGPVGFPGDPG--PPGEPG 1324
Query: 136 ILRARGGRGTGSQSPLPASLGVP----------------PPPAMGVQRARGGRG----VG 175
G G + P G P PP A G + +G +G G
Sbjct: 1325 PAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAG 1384
Query: 176 SESPP-RWGCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLM 234
+E PP + G P GP + G G +P P G+ A G G P M
Sbjct: 1385 AEGPPGKTG--PVGPQGPAGKPGPEGLRGIP-----GPVGEQGLPGAAGQDG---PPGPM 1434
Query: 235 GGAS-PRCDGDPKSRGGRG 252
G P GDP S+G +G
Sbjct: 1435 GPPGLPGLKGDPGSKGEKG 1453
Score = 54.3 bits (129), Expect = 1e-07
Identities = 64/239 (26%), Positives = 89/239 (37%), Gaps = 17/239 (7%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAW--GGRGAGSQSLPRGGAS 75
PPG G K G+ G A V P + G G +G + +G
Sbjct: 1082 PPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKG 1141
Query: 76 ARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGV-APPGAM 134
+ + GP G +G + P + G P GP+ Q G G +RG PPG +
Sbjct: 1142 DKGENGPPGPPGLQGPVGAPGIAGGDGEP----GPRGQQGMFGQKGDEGARGFPGPPGPI 1197
Query: 135 GILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGV-GSESPPRWGCLPTCDG-GP 192
G+ G G ++ +G P PP G + +G G G + PP G + + G G
Sbjct: 1198 GLQGLPGPPGEKGENGDVGPMGPPGPP--GPRGPQGPNGADGPQGPP--GSVGSVGGVGE 1253
Query: 193 KSQGGKRGWLSVPA-SWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCDGDPKSRGG 250
K + G+ G P + V P G G G A P G P D PK G
Sbjct: 1254 KGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPP---GAKGPPGDDGPKGNPG 1309
Score = 50.8 bits (120), Expect = 1e-06
Identities = 62/245 (25%), Positives = 82/245 (33%), Gaps = 42/245 (17%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLP--RGGAS 75
P G+ GP+ G++G P PP G Q LP G
Sbjct: 965 PGGVVGPQGPTGETGPIGERGHPGPPGPP------------------GEQGLPGAAGKEG 1006
Query: 76 ARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGVAPPGAMG 135
A+ D GP+ GK G + P P G P +GG+ PPG +G
Sbjct: 1007 AKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQ---------GPPGPVG 1057
Query: 136 ILRARGGRGTGSQSPLPASLGVPPPP-------AMGVQRARGGRGVGSESPPRWGCLPTC 188
RG GT LP G PP A G + +G G P P
Sbjct: 1058 SPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAG 1117
Query: 189 DGGPKSQGGKRGWLSVPA-SWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCDGDPKS 247
G + G +G + P G G +G +P + GG DG+P
Sbjct: 1118 PAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGG-----DGEPGP 1172
Query: 248 RGGRG 252
RG +G
Sbjct: 1173 RGQQG 1177
Score = 47.4 bits (111), Expect = 1e-05
Identities = 58/224 (25%), Positives = 73/224 (32%), Gaps = 29/224 (12%)
Query: 44 PPPAMGVL----KARGGRAWGGRGAGSQSLPRGGASARCDGGPKSQGGKRGWLSVPSLPR 99
PP MG+ G + G +G P+G + GP + GKRG
Sbjct: 530 PPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGAD---- 585
Query: 100 GGASPQCDGGPKSQGGKSGWLSVPASRG-------VAPPGAMGILRARGGRGTGSQSPLP 152
GG + G K G G +P +G PPG G RG G LP
Sbjct: 586 GGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLP 645
Query: 153 ASLG----VPPPPAMGVQRARGGRGVGSESPPRWGCLPTCDGGPKSQGGKRGWLSVPASW 208
G + P G G GV P+ P + GP Q G G +P
Sbjct: 646 GEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPG-- 703
Query: 209 VVSPTPAMGVLRARGGRGVALSPYLMGGASPRCDGDPKSRGGRG 252
G + G +G P L G P DG P G G
Sbjct: 704 ------PQGPIGPPGEKGPQGKPGLAG--LPGADGPPGHPGKEG 739
Score = 40.0 bits (92), Expect = 0.002
Identities = 47/167 (28%), Positives = 61/167 (36%), Gaps = 17/167 (10%)
Query: 13 ERGAS-PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPR 71
E GA PPG GP G +G +P P L G+ G LP
Sbjct: 1382 EAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLP- 1440
Query: 72 GGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQG--GKSGWLSVPASRG-V 128
+ D G K + G G + + P G P +QG G G +P G +
Sbjct: 1441 ---GLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPL 1497
Query: 129 APPGAMGILRARGGRGT-GSQSP--------LPASLGVPPPPAMGVQ 166
PPG G+ +G +G GS P LP G P PP +Q
Sbjct: 1498 GPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQ 1544
Score = 32.7 bits (73), Expect = 0.32
Identities = 46/180 (25%), Positives = 63/180 (35%), Gaps = 27/180 (15%)
Query: 87 GKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRG-VAPPGAMGILRARGGRGT 145
G++G P++ G + GP G +G + P +G PPG G RG
Sbjct: 423 GEKGQKGEPAVVEPGMLVE---GPPGPAGPAGIMGPPGLQGPTGPPGDPG------DRGP 473
Query: 146 GSQSPLPASLGVPPPPAMGVQRARGGRGVGSESPPRWGCLPTCDG-------------GP 192
+ LP + G+P PP + G GS+ P GP
Sbjct: 474 PGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGP 533
Query: 193 KSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCDGDPKSRGGRG 252
G+ G + P S G +G RGV P G R G P + GGRG
Sbjct: 534 MGLTGRPGPVGGPGS--SGAKGESGDPGPQGPRGVQGPPGPTGKPGKR--GRPGADGGRG 589
>gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo
sapiens]
Length = 2971
Score = 58.9 bits (141), Expect = 4e-09
Identities = 54/191 (28%), Positives = 73/191 (38%), Gaps = 7/191 (3%)
Query: 13 ERGASPPGIGGPKSQWGKSGWFSIAASWRVPPPPA-MGVLKARG-GRAWGGRGAGSQSLP 70
ERG PPG+ G + G G + S P +G + G G +G S
Sbjct: 1866 ERG--PPGVNGTQGFQGCPGQRGVKGSRGFPGEKGEVGEIGLDGLDGEDGDKGLPGSSGE 1923
Query: 71 RGGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGVAP 130
+G R D GP+ + G+RG + + P + GPK + G G + VP GV
Sbjct: 1924 KGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQDSQERGPKGETGDLGPMGVPGRDGV-- 1981
Query: 131 PGAMGILRARGGRGTGSQSPLPASLGVPPPPAM-GVQRARGGRGVGSESPPRWGCLPTCD 189
PG G GG G + G P P G Q RG +G + P
Sbjct: 1982 PGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGI 2041
Query: 190 GGPKSQGGKRG 200
GP+ GG G
Sbjct: 2042 SGPRGSGGAAG 2052
>gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo
sapiens]
Length = 3177
Score = 58.9 bits (141), Expect = 4e-09
Identities = 54/191 (28%), Positives = 73/191 (38%), Gaps = 7/191 (3%)
Query: 13 ERGASPPGIGGPKSQWGKSGWFSIAASWRVPPPPA-MGVLKARG-GRAWGGRGAGSQSLP 70
ERG PPG+ G + G G + S P +G + G G +G S
Sbjct: 2072 ERG--PPGVNGTQGFQGCPGQRGVKGSRGFPGEKGEVGEIGLDGLDGEDGDKGLPGSSGE 2129
Query: 71 RGGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGVAP 130
+G R D GP+ + G+RG + + P + GPK + G G + VP GV
Sbjct: 2130 KGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQDSQERGPKGETGDLGPMGVPGRDGV-- 2187
Query: 131 PGAMGILRARGGRGTGSQSPLPASLGVPPPPAM-GVQRARGGRGVGSESPPRWGCLPTCD 189
PG G GG G + G P P G Q RG +G + P
Sbjct: 2188 PGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGI 2247
Query: 190 GGPKSQGGKRG 200
GP+ GG G
Sbjct: 2248 SGPRGSGGAAG 2258
>gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo
sapiens]
Length = 2570
Score = 58.9 bits (141), Expect = 4e-09
Identities = 54/191 (28%), Positives = 73/191 (38%), Gaps = 7/191 (3%)
Query: 13 ERGASPPGIGGPKSQWGKSGWFSIAASWRVPPPPA-MGVLKARG-GRAWGGRGAGSQSLP 70
ERG PPG+ G + G G + S P +G + G G +G S
Sbjct: 1465 ERG--PPGVNGTQGFQGCPGQRGVKGSRGFPGEKGEVGEIGLDGLDGEDGDKGLPGSSGE 1522
Query: 71 RGGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGVAP 130
+G R D GP+ + G+RG + + P + GPK + G G + VP GV
Sbjct: 1523 KGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQDSQERGPKGETGDLGPMGVPGRDGV-- 1580
Query: 131 PGAMGILRARGGRGTGSQSPLPASLGVPPPPAM-GVQRARGGRGVGSESPPRWGCLPTCD 189
PG G GG G + G P P G Q RG +G + P
Sbjct: 1581 PGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGI 1640
Query: 190 GGPKSQGGKRG 200
GP+ GG G
Sbjct: 1641 SGPRGSGGAAG 1651
>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
Length = 1712
Score = 58.9 bits (141), Expect = 4e-09
Identities = 80/277 (28%), Positives = 104/277 (37%), Gaps = 52/277 (18%)
Query: 18 PPGIGGPKSQWGKSGW-FSI-AASWRVPPPPAMGVLKARGGRAWGGRGA------GSQSL 69
PPG+ GP G G+ F + A R P G ARG + W G G +++
Sbjct: 436 PPGLPGPP---GPDGFLFGLKGAKGRAGFPGLPGSPGARGPKGWKGDAGECRCTEGDEAI 492
Query: 70 --------PRGGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDG--GPKSQGGKSGW 119
P+G A + G K G G +P P P G GPK G S
Sbjct: 493 KGLPGLPGPKGFAGINGEPGRKGDRGDPGQHGLPGFPGLKGVPGNIGAPGPKGAKGDSRT 552
Query: 120 LSVPASRGVAPPGAMGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGV----- 174
++ RG PG G+ +G G+ + L G+P PP G++ G G
Sbjct: 553 ITTKGERG--QPGVPGVPGMKGDDGSPGRDGLDGFPGLPGPPGDGIKGPPGDPGYPGIPG 610
Query: 175 -----GSESPPRWGCLPTCDGGPKSQGGKRG--WLSVPASWVVSPTPA---------MGV 218
G PP G LP G K Q G G L P ++ P PA V
Sbjct: 611 TKGTPGEMGPPGLG-LP----GLKGQRGFPGDAGLPGPPGFLGPPGPAGTPGQIDCDTDV 665
Query: 219 LRARGG-RGVALSPYLMGGAS--PRCDGDPKSRGGRG 252
RA GG R A+ P +GG P G P G +G
Sbjct: 666 KRAVGGDRQEAIQPGCIGGPKGLPGLPGPPGPTGAKG 702
Score = 45.4 bits (106), Expect = 5e-05
Identities = 68/252 (26%), Positives = 88/252 (34%), Gaps = 37/252 (14%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASAR 77
PPG+G P G G +P PP G L G G+ + R R
Sbjct: 620 PPGLGLP----GLKGQRGFPGDAGLPGPP--GFLGPPGPAGTPGQIDCDTDVKRAVGGDR 673
Query: 78 -------CDGGPKSQGGKRGWLSVPSLPRGGASPQ-------CDGGPKSQG--GKSGWLS 121
C GGPK G G P P G + DGGP +G G +G
Sbjct: 674 QEAIQPGCIGGPKGLPGLPG----PPGPTGAKGLRGIPGFAGADGGPGPRGLPGDAGREG 729
Query: 122 VPASRGVAPPGAMGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGVGSESPPR 181
P PPG +G ++G G P +G+P P +R G +G++ PR
Sbjct: 730 FPG-----PPGFIGPRGSKGAVGLPGPDGSPGPIGLPGPDGPPGERGLPGEVLGAQPGPR 784
Query: 182 WGCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGG-RGVALSPYLMGGASPR 240
G K G RG P P M L+ + G G + P L G P
Sbjct: 785 GDAGVPGQPGLKGLPGDRG---PPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYG--PPG 839
Query: 241 CDGDPKSRGGRG 252
G P + G G
Sbjct: 840 LHGFPGAPGQEG 851
Score = 44.7 bits (104), Expect = 8e-05
Identities = 67/265 (25%), Positives = 91/265 (34%), Gaps = 58/265 (21%)
Query: 13 ERGASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRG 72
ERGA PG+ GPK G G + +P P G + R G G
Sbjct: 92 ERGA--PGVTGPKGDVGARGVSGFPGADGIPGHPGQGGPRGRPGY-------------DG 136
Query: 73 GASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWL-SVPASRGVAPP 131
+ D GP+ G G+ P PQ GPK Q G+ L R P
Sbjct: 137 CNGTQGDSGPQGPPGSEGFTGPP-------GPQ---GPKGQKGEPYALPKEERDRYRGEP 186
Query: 132 GAMGILRARGGRG----TGSQSPLPASLGVPPPPAMGVQRARGGRGVGSESPPRWGCLPT 187
G G++ +G G G P+ A PP G + +G RG+G
Sbjct: 187 GEPGLVGFQGPPGRPGHVGQMGPVGAPGRPGPPGPPGPKGQQGNRGLGFYGVKG------ 240
Query: 188 CDGGPKSQGGKRGWLSVPASWVVSPT------------------PAMGVLRARGGRGVAL 229
+ G Q G G S +++PT P + + +G G+
Sbjct: 241 -EKGDVGQPGPNGIPSDTLHPIIAPTGVTFHPDQYKGEKGSEGEPGIRGISLKGEEGIMG 299
Query: 230 SPYLMG--GASPRCDGDPKSRGGRG 252
P L G G S G P +G RG
Sbjct: 300 FPGLRGYPGLSGE-KGSPGQKGSRG 323
Score = 44.7 bits (104), Expect = 8e-05
Identities = 48/197 (24%), Positives = 66/197 (33%), Gaps = 36/197 (18%)
Query: 60 GGRGAGSQSLPRGGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGW 119
G +G+ Q RG + GP+ G+ G P LP P G + G G
Sbjct: 311 GEKGSPGQKGSRGLDGYQGPDGPRGPKGEAGDPGPPGLPAYSPHPSLAKGARGDPGFPGA 370
Query: 120 LSVPASRGVAPPGAMGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGVGSESP 179
P S+G P G+P PP + + RG+ E
Sbjct: 371 QGEPGSQGE-----------------------PGDPGLPGPPGLSIGDGDQRRGLPGEMG 407
Query: 180 PRWGC----LPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMG 235
P+ +P GGP GKRG P P P + +G +G A
Sbjct: 408 PKGFIGDPGIPALYGGPPGPDGKRG-PPGPPGLPGPPGPDGFLFGLKGAKGRA------- 459
Query: 236 GASPRCDGDPKSRGGRG 252
P G P +RG +G
Sbjct: 460 -GFPGLPGSPGARGPKG 475
Score = 36.2 bits (82), Expect = 0.029
Identities = 49/179 (27%), Positives = 63/179 (35%), Gaps = 14/179 (7%)
Query: 87 GKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGVAP-PGAMGILRARGGRGT 145
G G P L P G P SQG + G + +P +G PGA G+ G RG
Sbjct: 1137 GVTGVQGPPGLKGQTGFPGLTGPPGSQG-ELGRIGLPGGKGDDGWPGAPGLPGFPGLRGI 1195
Query: 146 GSQSPLPASLGVPPPPAMGVQRARGGRGVGSE--SPPRWGCLPTCDGGPKSQG-----GK 198
LP + G P P + G G E P LP G P +G G+
Sbjct: 1196 RGLHGLPGTKGFPGSPGSDIHGDPGFPGPPGERGDPGEANTLPGPVGVPGQKGDQGAPGE 1255
Query: 199 RGWLSVPA----SWVVSPTPAMGVLRARGGRGV-ALSPYLMGGASPRCDGDPKSRGGRG 252
RG P + P+ G +G G+ L Y P P S+G G
Sbjct: 1256 RGPPGSPGLQGFPGITPPSNISGAPGDKGAPGIFGLKGYRGPPGPPGSAALPGSKGDTG 1314
Score = 32.0 bits (71), Expect = 0.54
Identities = 63/276 (22%), Positives = 95/276 (34%), Gaps = 60/276 (21%)
Query: 19 PGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASARC 78
PG G K G++G+F I + P +G R G + G +
Sbjct: 940 PGFPGSK---GEAGFFGIPGLKGLAGEPGF-----KGSRGDPGPPGPPPVILPGMKDIKG 991
Query: 79 DGGPKSQGGKRGWLS------VPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGV---- 128
+ G + G +G+L +P +P P G P G G + VP G+
Sbjct: 992 EKGDEGPMGLKGYLGAKGIQGMPGIPGLSGIPGLPGRPGHIKGVKGDIGVPGIPGLPGFP 1051
Query: 129 ---APPGAM---GILRARGGRGTGSQSPLPASLG-----------VPPPPAMGVQRARGG 171
PPG G + +RG +G ++ L +G + P G++ RG
Sbjct: 1052 GVAGPPGITGFPGFIGSRGDKGAPGRAGLYGEIGATGDFGDIGDTINLPGRPGLKGERGT 1111
Query: 172 RGV----------GSESPPRWGCLPTCDG-----GPKSQGGKRGWLSVPASWVVSPTPAM 216
G+ G+E + + G G K Q G G P S +
Sbjct: 1112 TGIPGLKGFFGEKGTEGDIGFPGITGVTGVQGPPGLKGQTGFPGLTGPPGS-----QGEL 1166
Query: 217 GVLRARGGRGVALSPYLMGGASPRCDGDPKSRGGRG 252
G + GG+G P +P G P RG RG
Sbjct: 1167 GRIGLPGGKGDDGWP-----GAPGLPGFPGLRGIRG 1197
>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
sapiens]
Length = 921
Score = 57.4 bits (137), Expect = 1e-08
Identities = 71/250 (28%), Positives = 94/250 (37%), Gaps = 34/250 (13%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASAR 77
PPG GPK G G I +P P L GR G +P G
Sbjct: 509 PPGEAGPKGDRGAEGARGIPG---LPGPKGDTGLPGVDGRD------GIPGMP-GTKGEP 558
Query: 78 CDGGPKSQGGKRGWLSVPSLP--RGGASPQCDGGPKSQGGKSGWLSVPASRG----VAPP 131
GP G +G VP +P +G A + G + G+ G P +G V P
Sbjct: 559 GKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGSTGAPGKPGQMGNSGKPGQQGPPGEVGPR 618
Query: 132 GAMGILRARGGRGTGSQSPLPASLG---------VPPPPAMGVQRARGGRGVGSESPPRW 182
G G+ +RG G LP LG +P PP G+ +G RGV E P+
Sbjct: 619 GPQGLPGSRGELGPVGSPGLPGKLGSLGSPGLPGLPGPP--GLPGMKGDRGVVGEPGPKG 676
Query: 183 GCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCD 242
+ + G + G+ G + +P P + G G RG S L G PR
Sbjct: 677 EQGASGEEGEAGERGELGDIGLP-----GPKGSAGNPGEPGLRGPEGSRGLPGVEGPR-- 729
Query: 243 GDPKSRGGRG 252
G P RG +G
Sbjct: 730 GPPGPRGVQG 739
Score = 43.1 bits (100), Expect = 2e-04
Identities = 73/268 (27%), Positives = 85/268 (31%), Gaps = 55/268 (20%)
Query: 10 TVEERGASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSL 69
T +ERG PPG GP G PP G+ G R
Sbjct: 264 TTDERG--PPGEQGPPGPPG--------------PPGVPGIDGIDGDRG----------- 296
Query: 70 PRGGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQG--GKSGWLSVPASRG 127
P+G GP + GK G P P DG P S G G+ G VP SRG
Sbjct: 297 PKGPPGPP---GPAGEPGKPGAPGKPGTPGADGLTGPDGSPGSIGSKGQKGEPGVPGSRG 353
Query: 128 V------APPGAMGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGVGSESPPR 181
PPG G G G P G P PP R G G P
Sbjct: 354 FPGRGIPGPPGPPGTAGLPGELGRVGPVGDPGRRGPPGPPGPPGPRGTIGFHDGDPLCPN 413
Query: 182 WGCLPTCDGGPKSQG-----GKRGWLSVPA----------SWVVSPTPAMGVLRARGGRG 226
C P G P G G +G + P + A G A+G RG
Sbjct: 414 -ACPPGRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGAQGLRG 472
Query: 227 VALSPYLMGGASPR-CDGDPKSRGGRGA 253
+ G R DG+P +G GA
Sbjct: 473 ITGIVGDKGEKGARGLDGEPGPQGLPGA 500
Score = 41.6 bits (96), Expect = 7e-04
Identities = 77/293 (26%), Positives = 94/293 (32%), Gaps = 66/293 (22%)
Query: 19 PGIGGPKSQWGKSG-----WFSIAASWRVPPPPAMGVLKARGGRAW-----GGRGAGSQS 68
PG G K Q G+ G F P PP L GR G RG
Sbjct: 334 PGSIGSKGQKGEPGVPGSRGFPGRGIPGPPGPPGTAGLPGELGRVGPVGDPGRRGPPGPP 393
Query: 69 LPRG--GASARCDGGPKSQG----GKRGWLSVPSL-----PRGGASPQCDGGPKSQGGKS 117
P G G DG P G+ G+ +P + +G G K + G
Sbjct: 394 GPPGPRGTIGFHDGDPLCPNACPPGRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQ 453
Query: 118 GWLSVPASRGVAPPGAMG------ILRARGGRGTGSQSPLPASLGVPPPPAMGVQR---- 167
G L ++G PPGA G I+ +G +G P G+P P QR
Sbjct: 454 GELGEVGAQG--PPGAQGLRGITGIVGDKGEKGARGLDGEPGPQGLPGAPGDQGQRGPPG 511
Query: 168 ---------ARGGRGV-GSESPPRWGCLPTCDG-----------------GPKSQGGKRG 200
A G RG+ G P LP DG GP G +G
Sbjct: 512 EAGPKGDRGAEGARGIPGLPGPKGDTGLPGVDGRDGIPGMPGTKGEPGKPGPPGDAGLQG 571
Query: 201 WLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGA-SPRCDGDPKSRGGRG 252
VP A GV +G G P MG + P G P G RG
Sbjct: 572 LPGVPGI-----PGAKGVAGEKGSTGAPGKPGQMGNSGKPGQQGPPGEVGPRG 619
Score = 41.2 bits (95), Expect = 9e-04
Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 11/106 (10%)
Query: 100 GGASPQCDGGPKSQGGKSGWLSVPASRGV-APPGAMGI------LRARGGRGTGSQSP-- 150
G P GP + G G + + G+ PPGA+G+ L +G RG + P
Sbjct: 793 GRPGPPGPPGPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLGEKGERGPPGRGPNG 852
Query: 151 LPASLGVPPPPAMGVQRARGGRGVGSESPPRWGCLPTCDGGPKSQG 196
LP ++G+P P R GR G PP +P G P G
Sbjct: 853 LPGAIGLPGDPG-PASYGRNGRD-GERGPPGVAGIPGVPGPPGPPG 896
>gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo
sapiens]
Length = 678
Score = 57.4 bits (137), Expect = 1e-08
Identities = 71/250 (28%), Positives = 94/250 (37%), Gaps = 34/250 (13%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASAR 77
PPG GPK G G I +P P L GR G +P G
Sbjct: 266 PPGEAGPKGDRGAEGARGIPG---LPGPKGDTGLPGVDGRD------GIPGMP-GTKGEP 315
Query: 78 CDGGPKSQGGKRGWLSVPSLP--RGGASPQCDGGPKSQGGKSGWLSVPASRG----VAPP 131
GP G +G VP +P +G A + G + G+ G P +G V P
Sbjct: 316 GKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGSTGAPGKPGQMGNSGKPGQQGPPGEVGPR 375
Query: 132 GAMGILRARGGRGTGSQSPLPASLG---------VPPPPAMGVQRARGGRGVGSESPPRW 182
G G+ +RG G LP LG +P PP G+ +G RGV E P+
Sbjct: 376 GPQGLPGSRGELGPVGSPGLPGKLGSLGSPGLPGLPGPP--GLPGMKGDRGVVGEPGPKG 433
Query: 183 GCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCD 242
+ + G + G+ G + +P P + G G RG S L G PR
Sbjct: 434 EQGASGEEGEAGERGELGDIGLP-----GPKGSAGNPGEPGLRGPEGSRGLPGVEGPR-- 486
Query: 243 GDPKSRGGRG 252
G P RG +G
Sbjct: 487 GPPGPRGVQG 496
Score = 41.6 bits (96), Expect = 7e-04
Identities = 77/293 (26%), Positives = 94/293 (32%), Gaps = 66/293 (22%)
Query: 19 PGIGGPKSQWGKSG-----WFSIAASWRVPPPPAMGVLKARGGRAW-----GGRGAGSQS 68
PG G K Q G+ G F P PP L GR G RG
Sbjct: 91 PGSIGSKGQKGEPGVPGSRGFPGRGIPGPPGPPGTAGLPGELGRVGPVGDPGRRGPPGPP 150
Query: 69 LPRG--GASARCDGGPKSQG----GKRGWLSVPSL-----PRGGASPQCDGGPKSQGGKS 117
P G G DG P G+ G+ +P + +G G K + G
Sbjct: 151 GPPGPRGTIGFHDGDPLCPNACPPGRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQ 210
Query: 118 GWLSVPASRGVAPPGAMG------ILRARGGRGTGSQSPLPASLGVPPPPAMGVQR---- 167
G L ++G PPGA G I+ +G +G P G+P P QR
Sbjct: 211 GELGEVGAQG--PPGAQGLRGITGIVGDKGEKGARGLDGEPGPQGLPGAPGDQGQRGPPG 268
Query: 168 ---------ARGGRGV-GSESPPRWGCLPTCDG-----------------GPKSQGGKRG 200
A G RG+ G P LP DG GP G +G
Sbjct: 269 EAGPKGDRGAEGARGIPGLPGPKGDTGLPGVDGRDGIPGMPGTKGEPGKPGPPGDAGLQG 328
Query: 201 WLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGA-SPRCDGDPKSRGGRG 252
VP A GV +G G P MG + P G P G RG
Sbjct: 329 LPGVPGI-----PGAKGVAGEKGSTGAPGKPGQMGNSGKPGQQGPPGEVGPRG 376
Score = 41.2 bits (95), Expect = 9e-04
Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 11/106 (10%)
Query: 100 GGASPQCDGGPKSQGGKSGWLSVPASRGV-APPGAMGI------LRARGGRGTGSQSP-- 150
G P GP + G G + + G+ PPGA+G+ L +G RG + P
Sbjct: 550 GRPGPPGPPGPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLGEKGERGPPGRGPNG 609
Query: 151 LPASLGVPPPPAMGVQRARGGRGVGSESPPRWGCLPTCDGGPKSQG 196
LP ++G+P P R GR G PP +P G P G
Sbjct: 610 LPGAIGLPGDPG-PASYGRNGRD-GERGPPGVAGIPGVPGPPGPPG 653
Score = 40.8 bits (94), Expect = 0.001
Identities = 56/197 (28%), Positives = 65/197 (32%), Gaps = 25/197 (12%)
Query: 81 GPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQG--GKSGWLSVPASRGV------APPG 132
GP + GK G P P DG P S G G+ G VP SRG PPG
Sbjct: 62 GPAGEPGKPGAPGKPGTPGADGLTGPDGSPGSIGSKGQKGEPGVPGSRGFPGRGIPGPPG 121
Query: 133 AMGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGVGSESPPRWGCLPTCDGGP 192
G G G P G P PP R G G P C P G P
Sbjct: 122 PPGTAGLPGELGRVGPVGDPGRRGPPGPPGPPGPRGTIGFHDGDPLCPN-ACPPGRSGYP 180
Query: 193 KSQG-----GKRGWLSVPA----------SWVVSPTPAMGVLRARGGRGVALSPYLMGGA 237
G G +G + P + A G A+G RG+ G
Sbjct: 181 GLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGAQGLRGITGIVGDKGEK 240
Query: 238 SPR-CDGDPKSRGGRGA 253
R DG+P +G GA
Sbjct: 241 GARGLDGEPGPQGLPGA 257
Score = 36.6 bits (83), Expect = 0.022
Identities = 45/143 (31%), Positives = 51/143 (35%), Gaps = 19/143 (13%)
Query: 112 SQGGKSGWLSVPASRGVAPPGAMGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGG 171
+Q G G P G PPG GI G RG P G P P G G
Sbjct: 23 AQRGPPGEQGPPGPPG--PPGVPGIDGIDGDRGPKGPPGPPGPAGEPGKP--GAPGKPGT 78
Query: 172 RGVGSESPPRWGCLPTCDGGPKSQG--GKRGWLSVPASWVVSPTPAMGVLRARGGRGVAL 229
G + P DG P S G G++G VP S P G+ G G A
Sbjct: 79 PGADGLTGP--------DGSPGSIGSKGQKGEPGVPGS---RGFPGRGIPGPPGPPGTAG 127
Query: 230 SPYLMGGASPRCDGDPKSRGGRG 252
P +G P GDP RG G
Sbjct: 128 LPGELGRVGP--VGDPGRRGPPG 148
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 56.2 bits (134), Expect = 3e-08
Identities = 75/266 (28%), Positives = 90/266 (33%), Gaps = 39/266 (14%)
Query: 18 PPGIGGPKSQWGKSGWFSI-AASWRVPPPPAMGVLKARGGRAWGG----RGAGSQSLPRG 72
PPG G + G G A+ R PP G+ G G RG P G
Sbjct: 770 PPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVG 829
Query: 73 GASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRG----- 127
GP G++G PS G A P GP+ G G L +P SRG
Sbjct: 830 RTGEVGAVGPPGFAGEKG----PSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLP 885
Query: 128 -----VAPPGAMGILRARGGRGTGSQSPLPASLGVP-------------PPPAMGVQRAR 169
V PG +GI G RG P G P PP G +
Sbjct: 886 GVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHK 945
Query: 170 GGRGV-GSESPPRWGCLPTCDG--GPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRG 226
G RG G+ P P G GP + G RG S V P A+G G +G
Sbjct: 946 GERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRG--ETGPSGPVGPAGAVGPRGPSGPQG 1003
Query: 227 VALSPYLMGGASPRCDGDPKSRGGRG 252
+ G PR G P +G G
Sbjct: 1004 IRGDKGEPGEKGPR--GLPGLKGHNG 1027
Score = 54.7 bits (130), Expect = 8e-08
Identities = 78/264 (29%), Positives = 97/264 (36%), Gaps = 35/264 (13%)
Query: 12 EERGASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAM-GVLKARG-----GRA--WGGRG 63
E A P G GP + GK G A S P PP + G +RG GRA G G
Sbjct: 362 EPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPPG 421
Query: 64 AGSQSLPRGGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGP---KSQGGKSGWL 120
+ S P G D G + G G +P P G P GP G+ G +
Sbjct: 422 SRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSP-GNIGPAGKEGPVGLPGIDGRPGPI 480
Query: 121 SVPASRG----VAPPGAMGILRARGGRGTGSQSPLPASLGVPPPPA-------MGVQRAR 169
+RG + PG G G G + L + G P P G Q +
Sbjct: 481 GPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQ 540
Query: 170 GGRG-VGSESPPRWGCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVA 228
GG+G G PP + LP GP + GK G + + + P PA G RG
Sbjct: 541 GGKGEQGPPGPPGFQGLPG-PSGPAGEVGKPGERGLHGEFGL-PGPA-------GPRGER 591
Query: 229 LSPYLMGGASPRCDGDPKSRGGRG 252
P G A P G SRG G
Sbjct: 592 GPPGESGAAGP--TGPIGSRGPSG 613
Score = 50.8 bits (120), Expect = 1e-06
Identities = 65/208 (31%), Positives = 81/208 (38%), Gaps = 35/208 (16%)
Query: 70 PRGGASARCDGGPKSQGGKRGWLSVPSL--PRGG-ASPQCDGGPKSQG-----GKSGWLS 121
P+G A + GP G RG + +P L P G +P +G ++G G +G
Sbjct: 263 PKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPG 322
Query: 122 VPASRGV-APPGAMGILRARG---------GRGTGSQSPLPASLGVPPPPA-MGVQRARG 170
+P RG+ P GA G ARG +G P S G PP G + RG
Sbjct: 323 LPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRG 382
Query: 171 GRG-VGSESPPRWGCLPTCDGGPKSQG-----GKRGWLSVPASWVVSPTPAMGVLRARGG 224
G GS PP P G P S+G G+ G + P S A G RG
Sbjct: 383 PNGEAGSAGPPG---PPGLRGSPGSRGLPGADGRAGVMGPPGS-----RGASGPAGVRGP 434
Query: 225 RGVALSPYLMGGASPRCDGDPKSRGGRG 252
G A P G PR G P S G G
Sbjct: 435 NGDAGRPGEPGLMGPR--GLPGSPGNIG 460
Score = 50.4 bits (119), Expect = 1e-06
Identities = 72/249 (28%), Positives = 90/249 (36%), Gaps = 40/249 (16%)
Query: 19 PGIGGPKSQWGKSG---WFSIAASWRVPPPPAMGVLKARGGR--AWGGRGAGSQSLPRGG 73
PG GP GK+G +A + P P + G GG+G P G
Sbjct: 495 PGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGF 554
Query: 74 ASARCDGGPKSQGGK---RGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGVAP 130
GP + GK RG LP G A P+ + GP + G +G SRG +
Sbjct: 555 QGLPGPSGPAGEVGKPGERGLHGEFGLP-GPAGPRGERGPPGESGAAGPTGPIGSRGPSG 613
Query: 131 P-------GAMGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGVGSESPPRWG 183
P G G++ A G G S LP G P GG+G E R
Sbjct: 614 PPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIP--------GGKGEKGEPGLR-- 663
Query: 184 CLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCDG 243
G G+ G P + V +P PA A G RG A + G A PR G
Sbjct: 664 -------GEIGNPGRDGARGAPGA-VGAPGPA----GATGDRGEAGAAGPAGPAGPR--G 709
Query: 244 DPKSRGGRG 252
P RG G
Sbjct: 710 SPGERGEVG 718
Score = 48.9 bits (115), Expect = 4e-06
Identities = 67/247 (27%), Positives = 86/247 (34%), Gaps = 48/247 (19%)
Query: 16 ASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGG-RGAGSQSLPRGGA 74
A PPG GP+ G P +G+ +RG R G GA + P G A
Sbjct: 855 AGPPGTPGPQGLLG--------------APGILGLPGSRGERGLPGVAGAVGEPGPLGIA 900
Query: 75 SARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQG-----GKSGWLS----VPAS 125
GP G G P +P DG P G G+ G+ V A+
Sbjct: 901 GPPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNIGPVGAA 960
Query: 126 RGVAPPGAMGILRARGGRG-TGSQSPLPASLGVPPPPAMGVQRARGGRGVGSESPPRWGC 184
P G +G G RG TG P+ + V P G Q RG +G E PR
Sbjct: 961 GAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQGIRGDKGEPGEKGPRG-- 1018
Query: 185 LPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCDGD 244
LP G K G +G G+ G +G +P +G A PR
Sbjct: 1019 LP----GLKGHNGLQG--------------LPGIAGHHGDQG---APGSVGPAGPRGPAG 1057
Query: 245 PKSRGGR 251
P G+
Sbjct: 1058 PSGPAGK 1064
Score = 47.0 bits (110), Expect = 2e-05
Identities = 66/251 (26%), Positives = 79/251 (31%), Gaps = 19/251 (7%)
Query: 16 ASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGG--RAWGGRG-AGSQSLP-- 70
A P G GP + G +G S PP K G A G G +G LP
Sbjct: 585 AGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGE 644
Query: 71 RGGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGVAP 130
RG A G K + G RG + P +P G P G A+ P
Sbjct: 645 RGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGP 704
Query: 131 PGAMGILRARGGRGTGSQSPLPASLGVPPPPA----MGVQRARGGRGVGSESPPRWGCLP 186
G G RG G + G P G + +G GV + P P
Sbjct: 705 AGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGP 764
Query: 187 TCDGGPKSQGGKRGWLSVP-------ASWVVSPTPAMGVLRARGGRGVALSPYLMGGASP 239
GP G RG P A+ P G+ G G A L G P
Sbjct: 765 AGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRG---P 821
Query: 240 RCDGDPKSRGG 250
R D P R G
Sbjct: 822 RGDQGPVGRTG 832
Score = 46.6 bits (109), Expect = 2e-05
Identities = 53/192 (27%), Positives = 69/192 (35%), Gaps = 29/192 (15%)
Query: 16 ASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGAS 75
A PG+ GP+ G G + + P K G +G + P+G
Sbjct: 318 AGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGN----KGEPGSAGPQG--- 370
Query: 76 ARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRG----VAPP 131
GP + GKRG P G A GP G G +P + G + PP
Sbjct: 371 ---PPGPSGEEGKRG-------PNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPP 420
Query: 132 GAMGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRG-VGSESPPRWGCLPTCDG 190
G+ G G RG + P G+ P G+ + G G G E P LP DG
Sbjct: 421 GSRGASGPAGVRGPNGDAGRPGEPGLMGP--RGLPGSPGNIGPAGKEGPVG---LPGIDG 475
Query: 191 --GPKSQGGKRG 200
GP G RG
Sbjct: 476 RPGPIGPAGARG 487
Score = 38.9 bits (89), Expect = 0.004
Identities = 65/252 (25%), Positives = 84/252 (33%), Gaps = 43/252 (17%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASAR 77
P G GP G+ G P PP L + G+G G
Sbjct: 40 PRGERGPPGPPGRDGEDGPTGPPGPPGPPGPPGLGGNFAAQYDGKGVG------------ 87
Query: 78 CDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGVA-------- 129
GP G RG P G PQ GP + G+ G +RG A
Sbjct: 88 LGPGPMGLMGPRG----PPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGE 143
Query: 130 --------PPGAMGILRARGGRGTGSQSPLPASLGVPPPPAM-GVQRARGGRGVGSESPP 180
PG G++ +G RG LP G+ + G++ G GV E P
Sbjct: 144 DGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGE-PG 202
Query: 181 RWGCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPR 240
G + G Q G RG L V +P PA G + G G +G A P
Sbjct: 203 APG-----ENGTPGQTGARG-LPGERGRVGAPGPA-GARGSDGSVGPVGPAGPIGSAGP- 254
Query: 241 CDGDPKSRGGRG 252
G P + G +G
Sbjct: 255 -PGFPGAPGPKG 265
Score = 37.7 bits (86), Expect = 0.010
Identities = 42/152 (27%), Positives = 53/152 (34%), Gaps = 12/152 (7%)
Query: 16 ASPPGIGGPKSQWGKSG-WFSIAASWRVPPPPAMGVLKARGGRAW-GGRGAGSQSLPRGG 73
A PG GP GK G S V P A+G G + G +G + PRG
Sbjct: 960 AGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQGIRGDKGEPGEKGPRGL 1019
Query: 74 ASARCDGGPKSQGGKRGWLSVPSLPR--GGASPQCDGGPKSQGGKSGWLSVPASRGVAPP 131
+ G + G G P G A P+ GP GK G P
Sbjct: 1020 PGLKGHNGLQGLPGIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDG--------RTGHP 1071
Query: 132 GAMGILRARGGRGTGSQSPLPASLGVPPPPAM 163
G +G RG +G + P G P PP +
Sbjct: 1072 GTVGPAGIRGPQGHQGPAGPPGPPGPPGPPGV 1103
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 56.2 bits (134), Expect = 3e-08
Identities = 72/256 (28%), Positives = 94/256 (36%), Gaps = 42/256 (16%)
Query: 19 PGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGG-RG----------AGSQ 67
PG+ GP+ + G G + R PP ++G+ G G +G AG+
Sbjct: 578 PGVQGPEGKLGPLG--APGEDGRPGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNA 635
Query: 68 SLPRGGASARCDG--------GPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGW 119
+P + DG GP G+RG P P G GP +GGK G
Sbjct: 636 GVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPPG-PTGFQGLPGPPGPPGEGGKPGD 694
Query: 120 LSVPASRGVAPPGAMGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGV-GSES 178
VP PGA+G L RG RG + P G+P G + GG G G +
Sbjct: 695 QGVPGD-----PGAVGPLGPRGERGNPGERGEPGITGLP-----GEKGMAGGHGPDGPKG 744
Query: 179 PPRWGCLPTCDGGPKSQG--GKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGG 236
P P G P QG G+RG P P G + +G G A + G
Sbjct: 745 SPGPSGTPGDTGPPGLQGMPGERGIAGTP-----GPKGDRGGIGEKGAEGTAGNDGARGL 799
Query: 237 ASPRCDGDPKSRGGRG 252
P G P G G
Sbjct: 800 PGPL--GPPGPAGPTG 813
Score = 50.4 bits (119), Expect = 1e-06
Identities = 61/213 (28%), Positives = 75/213 (35%), Gaps = 44/213 (20%)
Query: 16 ASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGAS 75
A PG GP + GK G + P + G + RG G G G + P
Sbjct: 923 AGAPGPAGPLGEPGKEGPPGLRGD-----PGSHGRVGDRGPAGPPG-GPGDKGDPGEDGQ 976
Query: 76 ARCDGGPKSQG-----------GKRGWLSVPSLPRGGASPQCDG-----------GPKSQ 113
DG P G G+RG +P LP +P G GP
Sbjct: 977 PGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPTGATGDKGPPGPVGP 1036
Query: 114 GGKSGWLSVPASRGVA----PPGAMGILRARGGRGTGSQSPLPASLGVPPPPA-MGVQRA 168
G +G + P G A PG G + RG RG + LP S G P P +G
Sbjct: 1037 PGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGD 1096
Query: 169 RGGRG-VGSESPPRWGCLPTCDGGPKSQGGKRG 200
G RG GS P GP + GKRG
Sbjct: 1097 AGQRGDPGSRGPI----------GPPGRAGKRG 1119
Score = 50.1 bits (118), Expect = 2e-06
Identities = 80/292 (27%), Positives = 97/292 (33%), Gaps = 69/292 (23%)
Query: 16 ASPPGIGGPKSQWGKSGWFSIAASWRVP----------------------PPPAMGVLKA 53
A PPG GP+ G G VP PP G
Sbjct: 446 AGPPGSPGPQGSTGPQGIRGQPGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGP 505
Query: 54 RGGRAW-------GGRGA-------GSQSLPRGGASARCDGGPKSQGGKRGWLSVPSLPR 99
RG G RGA GS LP G A+ + GP G +G P P
Sbjct: 506 RGDPGTVGPPGPVGERGAPGNRGFPGSDGLP-GPKGAQGERGPVGSSGPKGSQGDPGRPG 564
Query: 100 GGASPQC---DGGPKSQG--GKSGWLSVPASRG-VAPPGAMGILRARGGRGTGSQSPLPA 153
P G P QG GK G L P G PPG++GI RG P
Sbjct: 565 EPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGI------RGQ------PG 612
Query: 154 SLGVPPPPAMGVQRARGGRGVGSESPPRWGCLPTCDG--------GPKSQGGKRGWLSVP 205
S+G+P P + G + P + G P DG GP G+RG P
Sbjct: 613 SMGLPGPKGSSGDPGKPGEAGNAGVPGQRGA-PGKDGEVGPSGPVGPPGLAGERGEQGPP 671
Query: 206 A----SWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCD-GDPKSRGGRG 252
+ P G G +GV P +G PR + G+P RG G
Sbjct: 672 GPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERGEPG 723
Score = 49.3 bits (116), Expect = 3e-06
Identities = 67/262 (25%), Positives = 92/262 (35%), Gaps = 40/262 (15%)
Query: 18 PPGIGGPKSQWGKSG------WFSIAASWRVPPPPAMGVLKARGGRAW--------GGRG 63
PPG G + G++G + + P P + LK G G G
Sbjct: 259 PPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAPGLPGLKGHRGHKGLEGPKGEVGAPG 318
Query: 64 AGSQSLPRGGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQG-----GKSG 118
+ ++ P G A GP+ G+RG L P + G P G G SG
Sbjct: 319 SKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMPGKPGPMGPLGIPGSSG 378
Query: 119 WLSVPASRGVA-PPGAMGILRARGGRG-TGSQSP-----LPASLGVPPPPAMGVQRARGG 171
+ P +G A P GA G +G RG TG P LP ++G P A+G
Sbjct: 379 FPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPVGSPGLPGAIGTDGTPG-----AKGP 433
Query: 172 RGVGSESPPRWGCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSP 231
G S P P GP+ G +G P P + + G P
Sbjct: 434 TGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGD------PGVPGFKGEAGPKGEPGP 487
Query: 232 Y-LMGGASPRCDGDPKSRGGRG 252
+ + G P G+ RG RG
Sbjct: 488 HGIQGPIGP--PGEEGKRGPRG 507
Score = 47.8 bits (112), Expect = 9e-06
Identities = 75/255 (29%), Positives = 92/255 (36%), Gaps = 48/255 (18%)
Query: 20 GIGGPKSQWGKSGWFSIAASWRVPPPPAM----GVLKARGGRA-WGGRG-------AGSQ 67
G G + G G I S P P M G ARG G RG GS
Sbjct: 357 GAHGMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPVGSP 416
Query: 68 SLPRGGASARCDGGPKSQG--GKRGWLSVPSL--PRGGASPQCDGGPKSQGGKSGWLSVP 123
LP + DG P ++G G G P P G PQ GP+ G+ G VP
Sbjct: 417 GLP---GAIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGDPGVP 473
Query: 124 ASRGVA----PPGAMGILRARGGRG-TGSQSPLPASLGVPPPPAMGVQRARGGRGV-GSE 177
+G A PG GI G G G + P V PP +G + A G RG GS+
Sbjct: 474 GFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSD 533
Query: 178 SPPRWGCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGA 237
P GPK G+RG P + G ++G G P L G
Sbjct: 534 GLP----------GPKGAQGERG-----------PVGSSGPKGSQGDPGRPGEPGLPGAR 572
Query: 238 SPRCDGDPKSRGGRG 252
G+P +G G
Sbjct: 573 G--LTGNPGVQGPEG 585
Score = 46.2 bits (108), Expect = 3e-05
Identities = 75/248 (30%), Positives = 90/248 (36%), Gaps = 31/248 (12%)
Query: 13 ERG-ASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPR 71
E+G A G GPK G SG PP G+ G RG P+
Sbjct: 730 EKGMAGGHGPDGPKGSPGPSG-----TPGDTGPPGLQGMP--------GERGIAGTPGPK 776
Query: 72 GGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGVAPP 131
G + G + G G +P P G P G K + G G + P SRG P
Sbjct: 777 GDRGGIGEKGAEGTAGNDGARGLPG-PLGPPGPAGPTGEKGEPGPRGLVGPPGSRG--NP 833
Query: 132 GAMGILRARGGRG-TGSQSP--LPASLGVPPPPAM-GVQRARGGRGV-GSESPPRWGCLP 186
G+ G G G G Q P P G P P G + G +G+ GS P +P
Sbjct: 834 GSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVP 893
Query: 187 TCDGGPKSQG--GKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCDGD 244
GG +QG G G+ A V P PA A G G P G P GD
Sbjct: 894 GLKGGRGTQGPPGATGFPG-SAGRVGPPGPA----GAPGPAGPLGEPGKEG--PPGLRGD 946
Query: 245 PKSRGGRG 252
P S G G
Sbjct: 947 PGSHGRVG 954
Score = 45.8 bits (107), Expect = 4e-05
Identities = 76/294 (25%), Positives = 100/294 (34%), Gaps = 79/294 (26%)
Query: 16 ASPPGIGGPKSQWGK------------SGWFSIAASWRVPPPP----------------- 46
A PPG GP+ + G G + P PP
Sbjct: 134 AGPPGSQGPRGERGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPGHPSHPGPDGLSRPFSA 193
Query: 47 --------------------AMGVLKARGGRAWGGRGAGSQSLPRGGASARCDGGPKSQG 86
++G + RG + G+ G+ P G D GP
Sbjct: 194 QMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGAG--PTGPPGEPGDPGPMGPI 251
Query: 87 GKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGVAPPGAMGILRARGGRG-T 145
G RG P P P +G P G+ G+ P +RG PGA G+ +G RG
Sbjct: 252 GSRGPEGPPGKPGEDGEPGRNGNP----GEVGFAGSPGARGF--PGAPGLPGLKGHRGHK 305
Query: 146 GSQSP-----LPASLG-VPPPPAMGVQRARGGRGVGSESPPRWGCLPTCDGGPKSQGGKR 199
G + P P S G P MG G RG+ P G L GP+ G+R
Sbjct: 306 GLEGPKGEVGAPGSKGEAGPTGPMGAMGPLGPRGM----PGERGRL-----GPQGAPGQR 356
Query: 200 GWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCDGDPKS-RGGRG 252
G +P P P MG L G G +P + G A P P+ +G RG
Sbjct: 357 GAHGMPG----KPGP-MGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRG 405
Score = 45.4 bits (106), Expect = 5e-05
Identities = 56/205 (27%), Positives = 71/205 (34%), Gaps = 20/205 (9%)
Query: 13 ERGASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARG--GRAWGGRGAGSQSLP 70
ERG PG+ GP GK G A+ PP +G + G G AG+ P
Sbjct: 1003 ERGM--PGLPGPAGTPGKVG--PTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTP 1058
Query: 71 R--GGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDG--------GPKSQGGKSGWL 120
G R D G G G P P +P G GP G++G
Sbjct: 1059 GRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGRAGKR 1118
Query: 121 SVPASRGVAPPGAMGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGVGSESPP 180
+P +G P G G RG RG G+P PP G +G G+ P
Sbjct: 1119 GLPGPQG--PRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPP--GPNGEQGSAGIPGPFGP 1174
Query: 181 RWGCLPTCDGGPKSQGGKRGWLSVP 205
R P G + G G + P
Sbjct: 1175 RGPPGPVGPSGKEGNPGPLGPIGPP 1199
Score = 43.1 bits (100), Expect = 2e-04
Identities = 58/214 (27%), Positives = 76/214 (35%), Gaps = 28/214 (13%)
Query: 60 GGRGAGSQSLPRGGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGW 119
G RG + P G R + GPK + G RG + P P G P G
Sbjct: 126 GIRGRPGPAGPPGSQGPRGERGPKGRPGPRGPQGIDGEPGVPGQPGAPGPP-------GH 178
Query: 120 LSVPASRGVAPPGAMGILRARGGRGTGSQSPL-PASLG-VPPPPAMGVQRARGGRG---- 173
S P G++ P + + G GSQ L P S+G V P G+Q +GG G
Sbjct: 179 PSHPGPDGLSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGAGPTGP 238
Query: 174 ------------VGSESPPRWGCLPTCDGGPKSQG--GKRGWLSVPASWVVSPTPAMGVL 219
+GS P P DG P G G+ G+ P + P + L
Sbjct: 239 PGEPGDPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAPGLPGL 298
Query: 220 RARGGRGVALSPYLMGGASPRCDGDPKSRGGRGA 253
+ G P GA P G+ G GA
Sbjct: 299 KGHRGHKGLEGPKGEVGA-PGSKGEAGPTGPMGA 331
Score = 35.4 bits (80), Expect = 0.049
Identities = 46/155 (29%), Positives = 51/155 (32%), Gaps = 25/155 (16%)
Query: 19 PGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASA-- 76
PG GP G +G S PP GRA G RG PRG
Sbjct: 1085 PGTPGPVGAPGDAGQRGDPGSRGPIGPP---------GRA-GKRGLPGPQGPRGDKGDHG 1134
Query: 77 -RCDGGPKSQGGKRGWLSVPSLP--------RGGASPQCDGGPKSQGGKSGWLSVPASRG 127
R D G K G G +P P G P GP G SG P G
Sbjct: 1135 DRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLG 1194
Query: 128 -VAPPGAMGILRARGGRGTGSQSPLPASLGVPPPP 161
+ PPG G + G G + P G P PP
Sbjct: 1195 PIGPPGVRGSVGEAGPEGPPGE---PGPPGPPGPP 1226
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 56.2 bits (134), Expect = 3e-08
Identities = 74/256 (28%), Positives = 92/256 (35%), Gaps = 53/256 (20%)
Query: 18 PPGIGGPKSQWGKSGWFSIAAS---WRVPPPP----------AMGVLKARGGRAWGGRGA 64
PPG+ G K G G+ + +P PP +MG A G R G
Sbjct: 1125 PPGLFGQKGDDGVRGFVGVIGPPGLQGLPGPPGEKGEVGDVGSMGPHGAPGPRGPQGP-T 1183
Query: 65 GSQSLPR--GGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSV 122
GS+ P GG G K + G G P P G P+ D G K G SG
Sbjct: 1184 GSEGTPGLPGGVGQPGAVGEKGERGDAGDPGPPGAP-GIPGPKGDIGEKGDSGPSGAAGP 1242
Query: 123 PASRGVAPPGAMGILRARGGRGTGSQSPLPASLGVPPPPAM-GVQRARGGRG----VGSE 177
P +G PPG G +G+ + LP LG P P + G+ + G +G VG
Sbjct: 1243 PGKKG--PPGE------DGAKGSVGPTGLPGDLGPPGDPGVSGIDGSPGEKGDPGDVGGP 1294
Query: 178 SPPRWGCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGA 237
PP P G P GKRG P+ MG G +G
Sbjct: 1295 GPPGASGEPGAPGPP----GKRG-----------PSGHMGREGREGEKGAK--------G 1331
Query: 238 SPRCDGDPKSRGGRGA 253
P DG P G GA
Sbjct: 1332 EPGPDGPPGRTGPMGA 1347
Score = 53.9 bits (128), Expect = 1e-07
Identities = 68/237 (28%), Positives = 87/237 (36%), Gaps = 39/237 (16%)
Query: 16 ASPPGIGGPKSQWGKSGWFSIAASWRVPP----PPAMGVLKARGGR----AWGGRGAGSQ 67
A PPG GP+ G SG + P G + +G + A G RG
Sbjct: 703 AGPPGYPGPRGVKGTSGNRGLQGEKGEKGEDGFPGFKGDVGLKGDQGKPGAPGPRGEDGP 762
Query: 68 SLPRGGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDG--------GPKSQGGKSGW 119
P+G A + GP G++G L VP LP P G GP + GKSG
Sbjct: 763 EGPKGQAGQAGEEGPPGSAGEKGKLGVPGLPGYPGRPGPKGSIGFPGPLGPIGEKGKSGK 822
Query: 120 LSVPASRGV-APPGAMGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGV-GSE 177
P G PPG+ G RG G Q +G P + G +G+ G +
Sbjct: 823 TGQPGLEGERGPPGSRG---ERGQPGATGQPGPKGDVGQDGAPGI-----PGEKGLPGLQ 874
Query: 178 SPPRWGCLPTCDGGPKSQG--------GKRGWLSVPASWVVSPTPAMGVLRARGGRG 226
PP + P G P QG G+RG L P GVL +G G
Sbjct: 875 GPPGF---PGPKGPPGHQGKDGRPGHPGQRGELGFQGQ--TGPPGPAGVLGPQGKTG 926
Score = 51.6 bits (122), Expect = 7e-07
Identities = 64/218 (29%), Positives = 77/218 (35%), Gaps = 25/218 (11%)
Query: 13 ERGASPPGIGGPKSQWGKSGWFSI-AASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPR 71
ERG PPG GP + G G A + PP +G G R + G P+
Sbjct: 933 ERG--PPGPPGPPGEQGLPGLEGREGAKGELGPPGPLGKEGPAGLRGFPG--------PK 982
Query: 72 GGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRG-VAP 130
GG D GP G +G P P G + GP G G S G V P
Sbjct: 983 GGPG---DPGPTGLKGDKG----PPGPVGANGSPGERGPLGPAGGIGLPGQSGSEGPVGP 1035
Query: 131 PGAMGILRARGGRGTGSQSPLPASLG-VPPPPAMGVQRARGGRGVGSESPPRWGCLPTCD 189
G G RG G + +P LG + PP A G G +G + D
Sbjct: 1036 AGKKGSRGERGPPGPTGKDGIPGPLGPLGPPGAAGPSGEEGDKGDVGAPGHKGSKGDKGD 1095
Query: 190 GGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGV 227
GP Q G RG P P A G RG G+
Sbjct: 1096 AGPPGQPGIRGPAGHP-----GPPGADGAQGRRGPPGL 1128
Score = 51.2 bits (121), Expect = 9e-07
Identities = 77/279 (27%), Positives = 96/279 (34%), Gaps = 59/279 (21%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGA--GSQSLP--RGG 73
P G G K G+ G +P P +G L G G G P +G
Sbjct: 1032 PVGPAGKKGSRGERGPPGPTGKDGIPGP--LGPLGPPGAAGPSGEEGDKGDVGAPGHKGS 1089
Query: 74 ASARCDGGPKSQGGKRGWLSVPSLP-----RGGASPQCDGGPKSQGGKSGWLSV---PAS 125
+ D GP Q G RG P P +G P G K G G++ V P
Sbjct: 1090 KGDKGDAGPPGQPGIRGPAGHPGPPGADGAQGRRGPPGLFGQKGDDGVRGFVGVIGPPGL 1149
Query: 126 RGVAPP----------GAMGILRARGGRG----TGSQSP--LPASLGVP----------- 158
+G+ P G+MG A G RG TGS+ LP +G P
Sbjct: 1150 QGLPGPPGEKGEVGDVGSMGPHGAPGPRGPQGPTGSEGTPGLPGGVGQPGAVGEKGERGD 1209
Query: 159 -----PPPAMGVQRARGGRGVGSESPPRWGCLPTCDGGPKSQGGKRGWLSVPASWVVSPT 213
PP A G+ +G G +S P P GP + G +G V PT
Sbjct: 1210 AGDPGPPGAPGIPGPKGDIGEKGDSGPSGAAGPPGKKGPPGEDGAKG--------SVGPT 1261
Query: 214 PAMGVLRARGGRGVALSPYLMGGASPRCDGDPKSRGGRG 252
G L G GV+ SP GDP GG G
Sbjct: 1262 GLPGDLGPPGDPGVSGI-----DGSPGEKGDPGDVGGPG 1295
Score = 46.6 bits (109), Expect = 2e-05
Identities = 77/302 (25%), Positives = 95/302 (31%), Gaps = 83/302 (27%)
Query: 19 PGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASARC 78
PG+ G K Q G G + PP G A G G G + PRG R
Sbjct: 556 PGLPGEKGQRGDFGHVG-----QPGPPGEDGERGAEGPP--GPTGQAGEPGPRGLLGPRG 608
Query: 79 DGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQG--------GKSGWLSVPASRGVAP 130
GP + G G P P G P QG G G + P +G P
Sbjct: 609 SPGPTGRPGVTGIDGAPGAKGNVGPPGEPGPPGQQGNHGSQGLPGPQGLIGTPGEKG--P 666
Query: 131 PGAMGILRARGGRG-------------TGSQSPLPASLGVPP-PPAMGVQRARGGRGV-- 174
PG GI G G G+Q P P S G P P GV+ G RG+
Sbjct: 667 PGNPGIPGLPGSDGPLGHPGHEGPTGEKGAQGP-PGSAGPPGYPGPRGVKGTSGNRGLQG 725
Query: 175 --------------------------------GSESP--PRWGCLPTCDGGPKSQGGKRG 200
G + P P+ + GP G++G
Sbjct: 726 EKGEKGEDGFPGFKGDVGLKGDQGKPGAPGPRGEDGPEGPKGQAGQAGEEGPPGSAGEKG 785
Query: 201 WLSVPA--SWVVSPTP--------AMGVLRARGGRGVALSPYLMGGASPRCDGDPKSRGG 250
L VP + P P +G + +G G P L G P P SRG
Sbjct: 786 KLGVPGLPGYPGRPGPKGSIGFPGPLGPIGEKGKSGKTGQPGLEGERGP-----PGSRGE 840
Query: 251 RG 252
RG
Sbjct: 841 RG 842
Score = 42.4 bits (98), Expect = 4e-04
Identities = 59/221 (26%), Positives = 79/221 (35%), Gaps = 30/221 (13%)
Query: 13 ERGA-SPPGIGGPKSQWGKSGWFSIAASWRVP----PPPAMGVLKARGGRAWGGRGAGSQ 67
E GA PPG GP G+ G + P PP G + ARG G G +
Sbjct: 1302 EPGAPGPPGKRGPSGHMGREGREGEKGAKGEPGPDGPPGRTGPMGARGPPGRVG-PEGLR 1360
Query: 68 SLPRGGASARCDGGPKSQG--GKRGWLSVPSLPRGGASPQCDG---------GPKSQGGK 116
+P G P G G G +P L +G P+ + GP + G+
Sbjct: 1361 GIPGPVGEPGLLGAPGQMGPPGPLGPSGLPGL-KGDTGPKGEKGHIGLIGLIGPPGEAGE 1419
Query: 117 SGWLSVPASRGVAPPGAMGILRARGGRGTGSQSPLPASLGVPPPPAM-GVQRARGGRGVG 175
G +P +G PPG G G P+ SLG P PP + G +G +G
Sbjct: 1420 KGDQGLPGVQG--PPGPKG--------DPGPPGPI-GSLGHPGPPGVAGPLGQKGSKGSP 1468
Query: 176 SESPPRWGCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAM 216
PR P GP + L +V P P +
Sbjct: 1469 GSMGPRGDTGPAGPPGPPGAPAELHGLRRRRRFVPVPLPVV 1509
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 55.8 bits (133), Expect = 3e-08
Identities = 68/241 (28%), Positives = 89/241 (36%), Gaps = 35/241 (14%)
Query: 19 PGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASARC 78
PG+ G K G +G + +P PP + G G RG +S PRG +
Sbjct: 478 PGLPGEKGHRGDTG------AQGLPGPPGEDGERGDDGEI-GPRGLPGESGPRGLLGPKG 530
Query: 79 DGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGVAPPGAMGILR 138
G G RG + P P+G PQ + GP Q G G +P P GA+G
Sbjct: 531 PPGIPGPPGVRG-MDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLP-----GPQGAIGPHG 584
Query: 139 ARGGRGTGSQSPLPASLGVP-------PPPAMGVQRARGGRGVGSESPPRWGCLPTCDG- 190
+G +G +P S G P PP G Q G +G PR + DG
Sbjct: 585 EKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRG--VKGVDGI 642
Query: 191 -GPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCDGDPKSRG 249
G K G++G P G + +G RG P G P PK R
Sbjct: 643 RGLKGHKGEKGEDGFPG--------FKGDIGVKGDRGEVGVPGSRGEDGPE---GPKGRT 691
Query: 250 G 250
G
Sbjct: 692 G 692
Score = 54.3 bits (129), Expect = 1e-07
Identities = 76/253 (30%), Positives = 90/253 (35%), Gaps = 31/253 (12%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASAR 77
PPG GP Q G +G A G A+G G RG P G
Sbjct: 1023 PPGPIGPVGQPGAAG-----ADGEPGARGPQGHFGAKGDE--GTRGFNGPPGPIGLQGLP 1075
Query: 78 CDGGPKSQGGKRGWLSVPSLP--RGGASPQCDGGPKSQGGKSGWLSVPASRG----VAPP 131
G K + G G + P P RG A P GP+ G G L P +G P
Sbjct: 1076 GPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSP 1135
Query: 132 GAM---GILRARGGRGTGSQSPLPASLGVPPPPA-MGVQRARGGRG-VGSESPPRWGCLP 186
G G+ RG RG +S P G P P G +G G VG P P
Sbjct: 1136 GIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPG----P 1191
Query: 187 TCDGGPKSQGGKR------GWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPR 240
+GGP+ Q G + G P S PT G G RG A SP G +
Sbjct: 1192 PGEGGPRGQDGAKGDRGEDGEPGQPGS--PGPTGENGPPGPLGKRGPAGSPGSEGRQGGK 1249
Query: 241 -CDGDPKSRGGRG 252
GDP + G G
Sbjct: 1250 GAKGDPGAIGAPG 1262
Score = 52.8 bits (125), Expect = 3e-07
Identities = 65/250 (26%), Positives = 82/250 (32%), Gaps = 66/250 (26%)
Query: 7 VNFTVEERGASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGS 66
V F + PPG+ GP+ G++G P PP G
Sbjct: 826 VGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPP------------------GE 867
Query: 67 QSLP--RGGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQG--GKSGWLSV 122
Q LP G + D GP GK G + P P GGP +G G SG
Sbjct: 868 QGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSG---- 923
Query: 123 PASRGVAPPGAMGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGVGSESPPRW 182
PPG G RG G+G P G PP A G +GV E P
Sbjct: 924 -------PPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPG-----AAGEKGVPGEKGPI- 970
Query: 183 GCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCD 242
GP + G +G + +P P GV G +G
Sbjct: 971 --------GPTGRDGVQGPVGLP-----GPAGPPGVAGEDGDKGEV-------------- 1003
Query: 243 GDPKSRGGRG 252
GDP +G +G
Sbjct: 1004 GDPGQKGTKG 1013
Score = 52.8 bits (125), Expect = 3e-07
Identities = 67/247 (27%), Positives = 91/247 (36%), Gaps = 24/247 (9%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASAR 77
PPG GP G G P PP G + + G A G RG + G
Sbjct: 1164 PPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDG-AKGDRGEDGEPGQPGSPGPT 1222
Query: 78 CDGGPKSQGGKRGWLSVPSLP--RGGASPQCDGGPKSQGGKSGWLSVPASRGVAPP---- 131
+ GP GKRG P +GG + D G GK+G + G P
Sbjct: 1223 GENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLR 1282
Query: 132 GAMGILRARGGRGTGSQSPLPASLGVPPPPAM-GVQRARGGRG----VGSESPPRWGCLP 186
G G + +G G Q+ P +G P P + G A+G +G +G PP
Sbjct: 1283 GLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEK 1342
Query: 187 TCDG--GPKSQGGKRGWLSVP-ASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCDG 243
G GP+ G++G + +P AS + P G+ G +G G P G
Sbjct: 1343 GDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGA------KGATGP---G 1393
Query: 244 DPKSRGG 250
PK G
Sbjct: 1394 GPKGEKG 1400
Score = 50.1 bits (118), Expect = 2e-06
Identities = 78/312 (25%), Positives = 96/312 (30%), Gaps = 92/312 (29%)
Query: 20 GIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAW----GGRGAGSQSLPRGGAS 75
G+ G K + G+ G+ P G + +G R G RG P+G
Sbjct: 644 GLKGHKGEKGEDGF-----------PGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTG 692
Query: 76 ARCDGGPKSQGGKRGWLSVPSLP------------------------------------- 98
D GP G++G L VP LP
Sbjct: 693 PTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRG 752
Query: 99 -RGGASPQCDGGPKSQGGKSGWLSVPASRGV-APPGAMGILRARGGRG-TGSQSP--LPA 153
RG P+ GP+ GKSG G PPG G+ +G G G + P P
Sbjct: 753 ERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPG 812
Query: 154 SLGVP-------------------PPPAMGVQRARGGRGV----GSESPPRWGCLPTCDG 190
G+P PP +G Q A G G G PP P +
Sbjct: 813 KDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPG----PPGEQ 868
Query: 191 GPKSQGGKRGWLSVP----ASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCD---- 242
G GK G P A P G RG G A P L G P
Sbjct: 869 GLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPA 928
Query: 243 GDPKSRGGRGAG 254
G P RG G+G
Sbjct: 929 GSPGERGAAGSG 940
Score = 50.1 bits (118), Expect = 2e-06
Identities = 73/267 (27%), Positives = 91/267 (34%), Gaps = 38/267 (14%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAM-------GVLKARG--------GRAWGGR 62
PPG GGP+ Q G G P P G L RG GR GG+
Sbjct: 1191 PPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQ-GGK 1249
Query: 63 GAGSQSLPRGGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSV 122
GA G GP GK G + LP G Q G Q G G +
Sbjct: 1250 GAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLP-GSVGQQGRPGATGQAGPPGPVGP 1308
Query: 123 PASRGV----------APPGAMGILRARGGRGTGSQSPLPASLGVPPPPA-MGVQRARGG 171
P G+ PG +G++ G +G LP G P MG+ A G
Sbjct: 1309 PGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGP 1368
Query: 172 RGVGSE------SPPRWGCLPTCDGGPKSQGGKRG--WLSVPASWVVSPTPAMGVLRARG 223
G G + P+ T GGPK + G +G P V+ P P + R
Sbjct: 1369 IGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTR- 1427
Query: 224 GRGVALSPYLMGGASPRCDGDPKSRGG 250
R V S + + G P S GG
Sbjct: 1428 -RSVDGSRLMQEDEAIPTGGAPGSPGG 1453
Score = 49.3 bits (116), Expect = 3e-06
Identities = 76/286 (26%), Positives = 100/286 (34%), Gaps = 59/286 (20%)
Query: 19 PGIGGPKSQWGKSGWFSIAASWRVPPPPAMGV-LKARGGRAWGGRG-------AGSQS-L 69
PG G + G G + S P PP + L R G G +G A +Q+ L
Sbjct: 333 PGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAIL 392
Query: 70 PRGGASARCDGGPKSQGGKRGWLSVPSLP-----------RGGASPQCDGGPKSQGGKSG 118
+ + R GP G+ G L P P +G PQ GP + G+ G
Sbjct: 393 QQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRG 452
Query: 119 WLSVPASRGVAPPGAMGILRARGGRGTGSQSPLP---------ASLGVPPPPAMGVQRAR 169
+RG+ PG G+ +G RG LP + G+P PP +R
Sbjct: 453 RAGADGARGM--PGDPGV---KGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGD 507
Query: 170 GG----RGVGSESPPRWGCLPT-------------CDG--GPKSQGGKRGWLSVPASWVV 210
G RG+ ES PR P DG GPK G +G P
Sbjct: 508 DGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGT 567
Query: 211 SPTPAM----GVLRARGGRGVALSPYLMGGASPRCDGDPKSRGGRG 252
T + G + G +G P L G P DG P G G
Sbjct: 568 PGTQGLPGPQGAIGPHGEKGPQGKPGLPG--MPGSDGPPGHPGKEG 611
Score = 34.3 bits (77), Expect = 0.11
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 12/100 (12%)
Query: 81 GPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGVAPPGAMGILRAR 140
GP+ G++G P++ G + GP G +G + P +G PG +G
Sbjct: 291 GPRGLKGEKG---EPAVLEPGMLVE---GPPGPEGPAGLIGPPGIQG--NPGPVG---DP 339
Query: 141 GGRGTGSQSPLPASLGVPPPPAMGVQRA-RGGRGVGSESP 179
G RG ++ LP S G P PP + R G G G + P
Sbjct: 340 GERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGP 379
Score = 33.5 bits (75), Expect = 0.18
Identities = 38/121 (31%), Positives = 46/121 (38%), Gaps = 12/121 (9%)
Query: 16 ASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAW-GGRGA-GSQSLP--R 71
A PPG GP G G A P +G++ G + G RG G Q P +
Sbjct: 1300 AGPPGPVGPPGLPGLRG--DAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQK 1357
Query: 72 GGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGVAPP 131
G GP GG G L P+ P+G GGPK + G G P PP
Sbjct: 1358 GEMGIPGASGPIGPGGPPG-LPGPAGPKGAKGATGPGGPKGEKGVQGPPGHP-----GPP 1411
Query: 132 G 132
G
Sbjct: 1412 G 1412
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 55.8 bits (133), Expect = 3e-08
Identities = 68/241 (28%), Positives = 89/241 (36%), Gaps = 35/241 (14%)
Query: 19 PGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASARC 78
PG+ G K G +G + +P PP + G G RG +S PRG +
Sbjct: 457 PGLPGEKGHRGDTG------AQGLPGPPGEDGERGDDGEI-GPRGLPGESGPRGLLGPKG 509
Query: 79 DGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGVAPPGAMGILR 138
G G RG + P P+G PQ + GP Q G G +P P GA+G
Sbjct: 510 PPGIPGPPGVRG-MDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLP-----GPQGAIGPHG 563
Query: 139 ARGGRGTGSQSPLPASLGVP-------PPPAMGVQRARGGRGVGSESPPRWGCLPTCDG- 190
+G +G +P S G P PP G Q G +G PR + DG
Sbjct: 564 EKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRG--VKGVDGI 621
Query: 191 -GPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCDGDPKSRG 249
G K G++G P G + +G RG P G P PK R
Sbjct: 622 RGLKGHKGEKGEDGFPG--------FKGDIGVKGDRGEVGVPGSRGEDGPE---GPKGRT 670
Query: 250 G 250
G
Sbjct: 671 G 671
Score = 54.3 bits (129), Expect = 1e-07
Identities = 76/253 (30%), Positives = 90/253 (35%), Gaps = 31/253 (12%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASAR 77
PPG GP Q G +G A G A+G G RG P G
Sbjct: 1002 PPGPIGPVGQPGAAG-----ADGEPGARGPQGHFGAKGDE--GTRGFNGPPGPIGLQGLP 1054
Query: 78 CDGGPKSQGGKRGWLSVPSLP--RGGASPQCDGGPKSQGGKSGWLSVPASRG----VAPP 131
G K + G G + P P RG A P GP+ G G L P +G P
Sbjct: 1055 GPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSP 1114
Query: 132 GAM---GILRARGGRGTGSQSPLPASLGVPPPPA-MGVQRARGGRG-VGSESPPRWGCLP 186
G G+ RG RG +S P G P P G +G G VG P P
Sbjct: 1115 GIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPG----P 1170
Query: 187 TCDGGPKSQGGKR------GWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPR 240
+GGP+ Q G + G P S PT G G RG A SP G +
Sbjct: 1171 PGEGGPRGQDGAKGDRGEDGEPGQPGS--PGPTGENGPPGPLGKRGPAGSPGSEGRQGGK 1228
Query: 241 -CDGDPKSRGGRG 252
GDP + G G
Sbjct: 1229 GAKGDPGAIGAPG 1241
Score = 52.8 bits (125), Expect = 3e-07
Identities = 65/250 (26%), Positives = 82/250 (32%), Gaps = 66/250 (26%)
Query: 7 VNFTVEERGASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGS 66
V F + PPG+ GP+ G++G P PP G
Sbjct: 805 VGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPP------------------GE 846
Query: 67 QSLP--RGGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQG--GKSGWLSV 122
Q LP G + D GP GK G + P P GGP +G G SG
Sbjct: 847 QGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSG---- 902
Query: 123 PASRGVAPPGAMGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGVGSESPPRW 182
PPG G RG G+G P G PP A G +GV E P
Sbjct: 903 -------PPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPG-----AAGEKGVPGEKGPI- 949
Query: 183 GCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCD 242
GP + G +G + +P P GV G +G
Sbjct: 950 --------GPTGRDGVQGPVGLP-----GPAGPPGVAGEDGDKGEV-------------- 982
Query: 243 GDPKSRGGRG 252
GDP +G +G
Sbjct: 983 GDPGQKGTKG 992
Score = 52.8 bits (125), Expect = 3e-07
Identities = 67/247 (27%), Positives = 91/247 (36%), Gaps = 24/247 (9%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASAR 77
PPG GP G G P PP G + + G A G RG + G
Sbjct: 1143 PPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDG-AKGDRGEDGEPGQPGSPGPT 1201
Query: 78 CDGGPKSQGGKRGWLSVPSLP--RGGASPQCDGGPKSQGGKSGWLSVPASRGVAPP---- 131
+ GP GKRG P +GG + D G GK+G + G P
Sbjct: 1202 GENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLR 1261
Query: 132 GAMGILRARGGRGTGSQSPLPASLGVPPPPAM-GVQRARGGRG----VGSESPPRWGCLP 186
G G + +G G Q+ P +G P P + G A+G +G +G PP
Sbjct: 1262 GLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEK 1321
Query: 187 TCDG--GPKSQGGKRGWLSVP-ASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCDG 243
G GP+ G++G + +P AS + P G+ G +G G P G
Sbjct: 1322 GDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGA------KGATGP---G 1372
Query: 244 DPKSRGG 250
PK G
Sbjct: 1373 GPKGEKG 1379
Score = 50.1 bits (118), Expect = 2e-06
Identities = 78/312 (25%), Positives = 96/312 (30%), Gaps = 92/312 (29%)
Query: 20 GIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAW----GGRGAGSQSLPRGGAS 75
G+ G K + G+ G+ P G + +G R G RG P+G
Sbjct: 623 GLKGHKGEKGEDGF-----------PGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTG 671
Query: 76 ARCDGGPKSQGGKRGWLSVPSLP------------------------------------- 98
D GP G++G L VP LP
Sbjct: 672 PTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRG 731
Query: 99 -RGGASPQCDGGPKSQGGKSGWLSVPASRGV-APPGAMGILRARGGRG-TGSQSP--LPA 153
RG P+ GP+ GKSG G PPG G+ +G G G + P P
Sbjct: 732 ERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPG 791
Query: 154 SLGVP-------------------PPPAMGVQRARGGRGV----GSESPPRWGCLPTCDG 190
G+P PP +G Q A G G G PP P +
Sbjct: 792 KDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPG----PPGEQ 847
Query: 191 GPKSQGGKRGWLSVP----ASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCD---- 242
G GK G P A P G RG G A P L G P
Sbjct: 848 GLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPA 907
Query: 243 GDPKSRGGRGAG 254
G P RG G+G
Sbjct: 908 GSPGERGAAGSG 919
Score = 50.1 bits (118), Expect = 2e-06
Identities = 73/267 (27%), Positives = 91/267 (34%), Gaps = 38/267 (14%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAM-------GVLKARG--------GRAWGGR 62
PPG GGP+ Q G G P P G L RG GR GG+
Sbjct: 1170 PPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQ-GGK 1228
Query: 63 GAGSQSLPRGGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSV 122
GA G GP GK G + LP G Q G Q G G +
Sbjct: 1229 GAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLP-GSVGQQGRPGATGQAGPPGPVGP 1287
Query: 123 PASRGV----------APPGAMGILRARGGRGTGSQSPLPASLGVPPPPA-MGVQRARGG 171
P G+ PG +G++ G +G LP G P MG+ A G
Sbjct: 1288 PGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGP 1347
Query: 172 RGVGSE------SPPRWGCLPTCDGGPKSQGGKRG--WLSVPASWVVSPTPAMGVLRARG 223
G G + P+ T GGPK + G +G P V+ P P + R
Sbjct: 1348 IGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTR- 1406
Query: 224 GRGVALSPYLMGGASPRCDGDPKSRGG 250
R V S + + G P S GG
Sbjct: 1407 -RSVDGSRLMQEDEAIPTGGAPGSPGG 1432
Score = 49.3 bits (116), Expect = 3e-06
Identities = 76/286 (26%), Positives = 100/286 (34%), Gaps = 59/286 (20%)
Query: 19 PGIGGPKSQWGKSGWFSIAASWRVPPPPAMGV-LKARGGRAWGGRG-------AGSQS-L 69
PG G + G G + S P PP + L R G G +G A +Q+ L
Sbjct: 312 PGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAIL 371
Query: 70 PRGGASARCDGGPKSQGGKRGWLSVPSLP-----------RGGASPQCDGGPKSQGGKSG 118
+ + R GP G+ G L P P +G PQ GP + G+ G
Sbjct: 372 QQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRG 431
Query: 119 WLSVPASRGVAPPGAMGILRARGGRGTGSQSPLP---------ASLGVPPPPAMGVQRAR 169
+RG+ PG G+ +G RG LP + G+P PP +R
Sbjct: 432 RAGADGARGM--PGDPGV---KGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGD 486
Query: 170 GG----RGVGSESPPRWGCLPT-------------CDG--GPKSQGGKRGWLSVPASWVV 210
G RG+ ES PR P DG GPK G +G P
Sbjct: 487 DGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGT 546
Query: 211 SPTPAM----GVLRARGGRGVALSPYLMGGASPRCDGDPKSRGGRG 252
T + G + G +G P L G P DG P G G
Sbjct: 547 PGTQGLPGPQGAIGPHGEKGPQGKPGLPG--MPGSDGPPGHPGKEG 590
Score = 34.3 bits (77), Expect = 0.11
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 12/100 (12%)
Query: 81 GPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGVAPPGAMGILRAR 140
GP+ G++G P++ G + GP G +G + P +G PG +G
Sbjct: 270 GPRGLKGEKG---EPAVLEPGMLVE---GPPGPEGPAGLIGPPGIQG--NPGPVG---DP 318
Query: 141 GGRGTGSQSPLPASLGVPPPPAMGVQRA-RGGRGVGSESP 179
G RG ++ LP S G P PP + R G G G + P
Sbjct: 319 GERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGP 358
Score = 33.5 bits (75), Expect = 0.18
Identities = 38/121 (31%), Positives = 46/121 (38%), Gaps = 12/121 (9%)
Query: 16 ASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAW-GGRGA-GSQSLP--R 71
A PPG GP G G A P +G++ G + G RG G Q P +
Sbjct: 1279 AGPPGPVGPPGLPGLRG--DAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQK 1336
Query: 72 GGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGVAPP 131
G GP GG G L P+ P+G GGPK + G G P PP
Sbjct: 1337 GEMGIPGASGPIGPGGPPG-LPGPAGPKGAKGATGPGGPKGEKGVQGPPGHP-----GPP 1390
Query: 132 G 132
G
Sbjct: 1391 G 1391
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
[Homo sapiens]
Length = 1736
Score = 55.8 bits (133), Expect = 3e-08
Identities = 68/241 (28%), Positives = 89/241 (36%), Gaps = 35/241 (14%)
Query: 19 PGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASARC 78
PG+ G K G +G + +P PP + G G RG +S PRG +
Sbjct: 564 PGLPGEKGHRGDTG------AQGLPGPPGEDGERGDDGEI-GPRGLPGESGPRGLLGPKG 616
Query: 79 DGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGVAPPGAMGILR 138
G G RG + P P+G PQ + GP Q G G +P P GA+G
Sbjct: 617 PPGIPGPPGVRG-MDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLP-----GPQGAIGPHG 670
Query: 139 ARGGRGTGSQSPLPASLGVP-------PPPAMGVQRARGGRGVGSESPPRWGCLPTCDG- 190
+G +G +P S G P PP G Q G +G PR + DG
Sbjct: 671 EKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRG--VKGVDGI 728
Query: 191 -GPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCDGDPKSRG 249
G K G++G P G + +G RG P G P PK R
Sbjct: 729 RGLKGHKGEKGEDGFPG--------FKGDIGVKGDRGEVGVPGSRGEDGPE---GPKGRT 777
Query: 250 G 250
G
Sbjct: 778 G 778
Score = 54.3 bits (129), Expect = 1e-07
Identities = 76/253 (30%), Positives = 90/253 (35%), Gaps = 31/253 (12%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASAR 77
PPG GP Q G +G A G A+G G RG P G
Sbjct: 1109 PPGPIGPVGQPGAAG-----ADGEPGARGPQGHFGAKGDE--GTRGFNGPPGPIGLQGLP 1161
Query: 78 CDGGPKSQGGKRGWLSVPSLP--RGGASPQCDGGPKSQGGKSGWLSVPASRG----VAPP 131
G K + G G + P P RG A P GP+ G G L P +G P
Sbjct: 1162 GPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSP 1221
Query: 132 GAM---GILRARGGRGTGSQSPLPASLGVPPPPA-MGVQRARGGRG-VGSESPPRWGCLP 186
G G+ RG RG +S P G P P G +G G VG P P
Sbjct: 1222 GIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPG----P 1277
Query: 187 TCDGGPKSQGGKR------GWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPR 240
+GGP+ Q G + G P S PT G G RG A SP G +
Sbjct: 1278 PGEGGPRGQDGAKGDRGEDGEPGQPGS--PGPTGENGPPGPLGKRGPAGSPGSEGRQGGK 1335
Query: 241 -CDGDPKSRGGRG 252
GDP + G G
Sbjct: 1336 GAKGDPGAIGAPG 1348
Score = 52.8 bits (125), Expect = 3e-07
Identities = 65/250 (26%), Positives = 82/250 (32%), Gaps = 66/250 (26%)
Query: 7 VNFTVEERGASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGS 66
V F + PPG+ GP+ G++G P PP G
Sbjct: 912 VGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPP------------------GE 953
Query: 67 QSLP--RGGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQG--GKSGWLSV 122
Q LP G + D GP GK G + P P GGP +G G SG
Sbjct: 954 QGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSG---- 1009
Query: 123 PASRGVAPPGAMGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGVGSESPPRW 182
PPG G RG G+G P G PP A G +GV E P
Sbjct: 1010 -------PPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPG-----AAGEKGVPGEKGPI- 1056
Query: 183 GCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCD 242
GP + G +G + +P P GV G +G
Sbjct: 1057 --------GPTGRDGVQGPVGLP-----GPAGPPGVAGEDGDKGEV-------------- 1089
Query: 243 GDPKSRGGRG 252
GDP +G +G
Sbjct: 1090 GDPGQKGTKG 1099
Score = 52.8 bits (125), Expect = 3e-07
Identities = 67/247 (27%), Positives = 91/247 (36%), Gaps = 24/247 (9%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASAR 77
PPG GP G G P PP G + + G A G RG + G
Sbjct: 1250 PPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDG-AKGDRGEDGEPGQPGSPGPT 1308
Query: 78 CDGGPKSQGGKRGWLSVPSLP--RGGASPQCDGGPKSQGGKSGWLSVPASRGVAPP---- 131
+ GP GKRG P +GG + D G GK+G + G P
Sbjct: 1309 GENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLR 1368
Query: 132 GAMGILRARGGRGTGSQSPLPASLGVPPPPAM-GVQRARGGRG----VGSESPPRWGCLP 186
G G + +G G Q+ P +G P P + G A+G +G +G PP
Sbjct: 1369 GLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEK 1428
Query: 187 TCDG--GPKSQGGKRGWLSVP-ASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCDG 243
G GP+ G++G + +P AS + P G+ G +G G P G
Sbjct: 1429 GDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGA------KGATGP---G 1479
Query: 244 DPKSRGG 250
PK G
Sbjct: 1480 GPKGEKG 1486
Score = 50.1 bits (118), Expect = 2e-06
Identities = 78/312 (25%), Positives = 96/312 (30%), Gaps = 92/312 (29%)
Query: 20 GIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAW----GGRGAGSQSLPRGGAS 75
G+ G K + G+ G+ P G + +G R G RG P+G
Sbjct: 730 GLKGHKGEKGEDGF-----------PGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTG 778
Query: 76 ARCDGGPKSQGGKRGWLSVPSLP------------------------------------- 98
D GP G++G L VP LP
Sbjct: 779 PTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRG 838
Query: 99 -RGGASPQCDGGPKSQGGKSGWLSVPASRGV-APPGAMGILRARGGRG-TGSQSP--LPA 153
RG P+ GP+ GKSG G PPG G+ +G G G + P P
Sbjct: 839 ERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPG 898
Query: 154 SLGVP-------------------PPPAMGVQRARGGRGV----GSESPPRWGCLPTCDG 190
G+P PP +G Q A G G G PP P +
Sbjct: 899 KDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPG----PPGEQ 954
Query: 191 GPKSQGGKRGWLSVP----ASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCD---- 242
G GK G P A P G RG G A P L G P
Sbjct: 955 GLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPA 1014
Query: 243 GDPKSRGGRGAG 254
G P RG G+G
Sbjct: 1015 GSPGERGAAGSG 1026
Score = 50.1 bits (118), Expect = 2e-06
Identities = 73/267 (27%), Positives = 91/267 (34%), Gaps = 38/267 (14%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAM-------GVLKARG--------GRAWGGR 62
PPG GGP+ Q G G P P G L RG GR GG+
Sbjct: 1277 PPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQ-GGK 1335
Query: 63 GAGSQSLPRGGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSV 122
GA G GP GK G + LP G Q G Q G G +
Sbjct: 1336 GAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLP-GSVGQQGRPGATGQAGPPGPVGP 1394
Query: 123 PASRGV----------APPGAMGILRARGGRGTGSQSPLPASLGVPPPPA-MGVQRARGG 171
P G+ PG +G++ G +G LP G P MG+ A G
Sbjct: 1395 PGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGP 1454
Query: 172 RGVGSE------SPPRWGCLPTCDGGPKSQGGKRG--WLSVPASWVVSPTPAMGVLRARG 223
G G + P+ T GGPK + G +G P V+ P P + R
Sbjct: 1455 IGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTR- 1513
Query: 224 GRGVALSPYLMGGASPRCDGDPKSRGG 250
R V S + + G P S GG
Sbjct: 1514 -RSVDGSRLMQEDEAIPTGGAPGSPGG 1539
Score = 49.3 bits (116), Expect = 3e-06
Identities = 76/286 (26%), Positives = 100/286 (34%), Gaps = 59/286 (20%)
Query: 19 PGIGGPKSQWGKSGWFSIAASWRVPPPPAMGV-LKARGGRAWGGRG-------AGSQS-L 69
PG G + G G + S P PP + L R G G +G A +Q+ L
Sbjct: 419 PGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAIL 478
Query: 70 PRGGASARCDGGPKSQGGKRGWLSVPSLP-----------RGGASPQCDGGPKSQGGKSG 118
+ + R GP G+ G L P P +G PQ GP + G+ G
Sbjct: 479 QQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRG 538
Query: 119 WLSVPASRGVAPPGAMGILRARGGRGTGSQSPLP---------ASLGVPPPPAMGVQRAR 169
+RG+ PG G+ +G RG LP + G+P PP +R
Sbjct: 539 RAGADGARGM--PGDPGV---KGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGD 593
Query: 170 GG----RGVGSESPPRWGCLPT-------------CDG--GPKSQGGKRGWLSVPASWVV 210
G RG+ ES PR P DG GPK G +G P
Sbjct: 594 DGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGT 653
Query: 211 SPTPAM----GVLRARGGRGVALSPYLMGGASPRCDGDPKSRGGRG 252
T + G + G +G P L G P DG P G G
Sbjct: 654 PGTQGLPGPQGAIGPHGEKGPQGKPGLPG--MPGSDGPPGHPGKEG 697
Score = 35.0 bits (79), Expect = 0.063
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 15/115 (13%)
Query: 66 SQSLPRGGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPAS 125
S GA+A GP+ G++G P++ G + GP G +G + P
Sbjct: 365 SAETAHSGAAAH---GPRGLKGEKG---EPAVLEPGMLVE---GPPGPEGPAGLIGPPGI 415
Query: 126 RGVAPPGAMGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRA-RGGRGVGSESP 179
+G PG +G G RG ++ LP S G P PP + R G G G + P
Sbjct: 416 QG--NPGPVG---DPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGP 465
Score = 33.5 bits (75), Expect = 0.18
Identities = 38/121 (31%), Positives = 46/121 (38%), Gaps = 12/121 (9%)
Query: 16 ASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAW-GGRGA-GSQSLP--R 71
A PPG GP G G A P +G++ G + G RG G Q P +
Sbjct: 1386 AGPPGPVGPPGLPGLRG--DAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQK 1443
Query: 72 GGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGVAPP 131
G GP GG G L P+ P+G GGPK + G G P PP
Sbjct: 1444 GEMGIPGASGPIGPGGPPG-LPGPAGPKGAKGATGPGGPKGEKGVQGPPGHP-----GPP 1497
Query: 132 G 132
G
Sbjct: 1498 G 1498
>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
Length = 1125
Score = 55.8 bits (133), Expect = 3e-08
Identities = 69/245 (28%), Positives = 89/245 (36%), Gaps = 29/245 (11%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASAR 77
PPG GPK G G + P P +G +G R GR + G
Sbjct: 329 PPGDPGPKGFQGNKGEPGPPGPYGSPGAPGIGQQGIKGERGQEGRPGAPGPIGVGEPGQP 388
Query: 78 CDGGPKSQGGKRGWLSVPSLP-RGGASPQCDGGPKSQGGKSG--WLSVPASRG----VAP 130
GP+ G+RG LP G P+ + G + G G LS+ +G V P
Sbjct: 389 GPRGPEGVPGERG------LPGEGFPGPKGEKGSEGPTGPQGLQGLSIKGEKGDIGPVGP 442
Query: 131 PGAMGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRG-VGSESP--PRWGCLPT 187
G MGI G G+ + + +G P P Q G +G VG P PR G +
Sbjct: 443 QGPMGI----PGIGSQGEQGIQGPIGPPGPQGPAGQGLPGSKGEVGQMGPTGPR-GPVGI 497
Query: 188 CDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCDGDPKS 247
GPK + G G P G A G +G A P G P G P
Sbjct: 498 GVQGPKGEPGSIGLPGQPG--------VPGEDGAAGKKGEAGLPGARGPEGPPGKGQPGP 549
Query: 248 RGGRG 252
+G G
Sbjct: 550 KGDEG 554
Score = 49.7 bits (117), Expect = 2e-06
Identities = 64/197 (32%), Positives = 82/197 (41%), Gaps = 37/197 (18%)
Query: 19 PGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGA-GSQSLPRGGASAR 77
PG GPK + G G F + + +P PP +G R GG G G + P G S R
Sbjct: 568 PGPEGPKGEPGIMGPFGMPGT-SIPGPPG-----PKGDR--GGPGIPGFKGEP--GLSIR 617
Query: 78 CDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGVAPPGAMGIL 137
GPK G RG + P L +G P G P+ G G + + RGV GA G
Sbjct: 618 ---GPKGVQGPRGPVGAPGL-KGDGYPGVPG-PRGLPGPPGPMGL---RGVGDTGAKGEP 669
Query: 138 RARGG------RGTGSQSP--------LPASLGVPPPPAMGVQRARGGRGVGSESPPRWG 183
RG RG G+Q P LP P PP G Q +G +G P+ G
Sbjct: 670 GVRGPPGPSGPRGVGTQGPKGDTGQKGLPGP---PGPPGYGSQGIKGEQGPQGFPGPK-G 725
Query: 184 CLPTCDGGPKSQGGKRG 200
+ G K + G+RG
Sbjct: 726 TMGHGLPGQKGEHGERG 742
Score = 48.5 bits (114), Expect = 6e-06
Identities = 70/254 (27%), Positives = 92/254 (36%), Gaps = 39/254 (15%)
Query: 13 ERGASPPGIGGPKSQWGKSG--------WFSI-AASWRVPPPPAMGVLKARGGRAWGGRG 63
ERG G GPK + G G SI + P G + G + G +G
Sbjct: 399 ERGLPGEGFPGPKGEKGSEGPTGPQGLQGLSIKGEKGDIGPVGPQGPMGIPGIGSQGEQG 458
Query: 64 AGSQSLPRGGASARCDGGPKSQG--GKRGWLSVPSLPRG--GASPQCDGGPKSQGGKSGW 119
P G G P S+G G+ G P+ PRG G Q GPK + G G
Sbjct: 459 IQGPIGPPGPQGPAGQGLPGSKGEVGQMG----PTGPRGPVGIGVQ---GPKGEPGSIGL 511
Query: 120 LSVPASRGVAPPGAMGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRG-VGSES 178
PG G+ G G ++ LP + G PP G +G G GS+
Sbjct: 512 -----------PGQPGVPGEDGAAGKKGEAGLPGARGPEGPPGKGQPGPKGDEGKKGSKG 560
Query: 179 PPRWGCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGAS 238
LP + GPK + G G +P + + P G RGG G+ P G
Sbjct: 561 NQGQRGLPGPE-GPKGEPGIMGPFGMPGTSIPGPPGPKG---DRGGPGI---PGFKGEPG 613
Query: 239 PRCDGDPKSRGGRG 252
G +G RG
Sbjct: 614 LSIRGPKGVQGPRG 627
Score = 43.5 bits (101), Expect = 2e-04
Identities = 68/251 (27%), Positives = 81/251 (32%), Gaps = 48/251 (19%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASAR 77
P GI G SQ G+ G + PP G G G +G Q P G
Sbjct: 445 PMGIPGIGSQ-GEQG-----IQGPIGPPGPQG---PAGQGLPGSKGEVGQMGPTGPRGPV 495
Query: 78 CDG--GPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASR------GVA 129
G GPK + G G P +P G GK G +P +R G
Sbjct: 496 GIGVQGPKGEPGSIGLPGQPGVP----------GEDGAAGKKGEAGLPGARGPEGPPGKG 545
Query: 130 PPGAMGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGVGSESPPRWGCLPTCD 189
PG G +G +G Q LP G P G+ G G PP
Sbjct: 546 QPGPKGDEGKKGSKGNQGQRGLPGPEG--PKGEPGIMGPFGMPGTSIPGPP--------- 594
Query: 190 GGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASP------RCDG 243
GPK G RG +P G +G RG +P L G P G
Sbjct: 595 -GPK---GDRGGPGIPGFKGEPGLSIRGPKGVQGPRGPVGAPGLKGDGYPGVPGPRGLPG 650
Query: 244 DPKSRGGRGAG 254
P G RG G
Sbjct: 651 PPGPMGLRGVG 661
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 55.5 bits (132), Expect = 5e-08
Identities = 59/187 (31%), Positives = 68/187 (36%), Gaps = 31/187 (16%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASAR 77
PPG GP + G+ G A +P PP K G+ AG LP
Sbjct: 33 PPGPPGPPGKPGQDGIDGEAGPPGLPGPPGP---KGAPGKPGKPGEAGLPGLPGVDGLTG 89
Query: 78 CDG--GPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGVA-PPGAM 134
DG GPK G+RG L P GP GGK G P GV+ PPG +
Sbjct: 90 RDGPPGPKGAPGERGSLGPP-------------GPPGLGGK-GLPGPPGEAGVSGPPGGI 135
Query: 135 GILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGVGSESPPRWGCLPTCDGGPKS 194
G+ RG G LP G P PP G GV E C C GP
Sbjct: 136 GL---RGPPGPSGLPGLPGPPGPPGPP--------GHPGVLPEGATDLQCPSICPPGPPG 184
Query: 195 QGGKRGW 201
G G+
Sbjct: 185 PPGMPGF 191
Score = 49.3 bits (116), Expect = 3e-06
Identities = 60/221 (27%), Positives = 82/221 (37%), Gaps = 46/221 (20%)
Query: 13 ERGASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRG 72
ERG P G GPK G+ G P GV G G+ G +P G
Sbjct: 269 ERG--PEGFRGPKGDLGRPG-----------PKGTPGVAGPSGEPGMPGKD-GQNGVP-G 313
Query: 73 GASARCDGGPKSQGGKRGWLSVPSLP-----------RGGASPQCDGGPKSQGGKSGWLS 121
+ + G G++G +P LP RG A + GP + G G
Sbjct: 314 LDGQKGEAGRNGAPGEKGPNGLPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAG 373
Query: 122 VPASRGVA-------------PPGAMGILRARGGRGTGSQSPLPASLG----VPPPPAMG 164
+P RG A PPGA G+ +G +G+ LP G V G
Sbjct: 374 MPGERGEAGHRGSAGALGPQGPPGAPGVRGFQGQKGSMGDPGLPGPQGLRGDVGDRGPGG 433
Query: 165 VQRARGGRGV-GSESPP--RWGCLPTCDGGPKSQGGKRGWL 202
+G +G+ GS+ P + P+ GPK + G RG L
Sbjct: 434 AAGPKGDQGIAGSDGLPGDKGELGPSGLVGPKGESGSRGEL 474
Score = 47.4 bits (111), Expect = 1e-05
Identities = 73/246 (29%), Positives = 93/246 (37%), Gaps = 26/246 (10%)
Query: 16 ASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGAS 75
A PPG+ GP G G +P P + L R G G +GA + RG
Sbjct: 52 AGPPGLPGPPGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPP-GPKGAPGE---RGSLG 107
Query: 76 ARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRG-VAPPGAM 134
GP GGK L P G + P G + G SG +P G PPG
Sbjct: 108 ---PPGPPGLGGK--GLPGPPGEAGVSGPPGGIGLRGPPGPSGLPGLPGPPGPPGPPGHP 162
Query: 135 GILRARGGRGTGSQSPLPASLGVPPPPAM-GVQRARGGRG----VGSESPPRWGCLPTCD 189
G+L T Q P G P PP M G + G +G VG + P
Sbjct: 163 GVLPE---GATDLQCPSICPPGPPGPPGMPGFKGPTGYKGEQGEVGKDGEKGDPGPPGPA 219
Query: 190 GGPKSQG--GKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCDGDPKS 247
G P S G G RG +P + P G + RG G+ +P G A R + P+
Sbjct: 220 GLPGSVGLQGPRGLRGLPGP--LGPPGDRGPIGFRGPPGIPGAP---GKAGDRGERGPEG 274
Query: 248 -RGGRG 252
RG +G
Sbjct: 275 FRGPKG 280
Score = 45.1 bits (105), Expect = 6e-05
Identities = 68/259 (26%), Positives = 83/259 (32%), Gaps = 49/259 (18%)
Query: 20 GIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASARCD 79
G GPK G+ G S P PP +G G G G S P GG R
Sbjct: 92 GPPGPKGAPGERG------SLGPPGPPGLG-----GKGLPGPPGEAGVSGPPGGIGLRGP 140
Query: 80 GGPKSQGGKRGWLSVPS-------LPRGGASPQCDG----------------GPKSQGGK 116
GP G G P LP G QC GP G+
Sbjct: 141 PGPSGLPGLPGPPGPPGPPGHPGVLPEGATDLQCPSICPPGPPGPPGMPGFKGPTGYKGE 200
Query: 117 SGWLSVPASRG-VAPPGAMGILRARGGRGTGSQSPLPASLGVPPPPA-MGVQRARGGRGV 174
G + +G PPG G+ + G +G LP LG P +G + G G
Sbjct: 201 QGEVGKDGEKGDPGPPGPAGLPGSVGLQGPRGLRGLPGPLGPPGDRGPIGFRGPPGIPGA 260
Query: 175 GSESPPRWGCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLM 234
++ R P GPK G+ G P V P+ G+ G GV
Sbjct: 261 PGKAGDRGERGPEGFRGPKGDLGRPGPKGTPG--VAGPSGEPGMPGKDGQNGV------- 311
Query: 235 GGASPRCDGDPKSRGGRGA 253
P DG G GA
Sbjct: 312 ----PGLDGQKGEAGRNGA 326
Score = 37.7 bits (86), Expect = 0.010
Identities = 44/149 (29%), Positives = 56/149 (37%), Gaps = 29/149 (19%)
Query: 81 GPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGVA----PPGAMGI 136
G Q G G P LP G P+ G + G++G +P G+ PPG G
Sbjct: 41 GKPGQDGIDGEAGPPGLP-GPPGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPGPKG- 98
Query: 137 LRARGGRGTGSQSPLPASLGVPPPPAMGVQRARG----------GRGVGSESPPRWGCLP 186
A G RG SLG P PP +G + G G+G PP LP
Sbjct: 99 --APGERG---------SLGPPGPPGLGGKGLPGPPGEAGVSGPPGGIGLRGPPGPSGLP 147
Query: 187 TCDG--GPKSQGGKRGWLSVPASWVVSPT 213
G GP G G L A+ + P+
Sbjct: 148 GLPGPPGPPGPPGHPGVLPEGATDLQCPS 176
Score = 36.6 bits (83), Expect = 0.022
Identities = 71/275 (25%), Positives = 89/275 (32%), Gaps = 53/275 (19%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARG-GRAWGGRG----AGSQSLP-- 70
PPG G + G+ G S+ P G + RG G A G +G AGS LP
Sbjct: 395 PPGAPGVRGFQGQKG--SMGDPGLPGPQGLRGDVGDRGPGGAAGPKGDQGIAGSDGLPGD 452
Query: 71 ------------RGGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSG 118
+G + +R + GPK G G V +P GP G G
Sbjct: 453 KGELGPSGLVGPKGESGSRGELGPKGTQGPNGTSGVQGVP----------GPPGPLGLQG 502
Query: 119 WLSVPASRGVAPPGAMG-------ILRARGGR--------GTGSQSPL-PASLGVP---- 158
VP G PG G I GG + PL P S+G P
Sbjct: 503 VPGVPGITG--KPGVPGKEASEQRIRELCGGMISEQIAQLAAHLRKPLAPGSIGRPGPAG 560
Query: 159 PPPAMGVQRARGGRGVGSESPPRWGCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGV 218
PP G + G G R D GP+ G RG + + P G
Sbjct: 561 PPGPPGPPGSIGHPGARGPPGYRGPTGELGDPGPRGNQGDRGDKGAAGAGLDGPEGDQGP 620
Query: 219 LRARGGRGVALSPYLMGGASPRCDGDPKSRGGRGA 253
+G G + P GDP G GA
Sbjct: 621 QGPQGVPGTSKDGQDGAPGEPGPPGDPGLPGAIGA 655
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 55.1 bits (131), Expect = 6e-08
Identities = 68/237 (28%), Positives = 82/237 (34%), Gaps = 25/237 (10%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASAR 77
PPG GPK + G S PP G A G G+ P+G
Sbjct: 2086 PPGPPGPKVSVDEPG---PGLSGEQGPPGLKG--------AKGEPGSNGDQGPKGDRGVP 2134
Query: 78 CDGGPKSQGGKRGWLSVPSLP--RGGASPQCDGGPKSQGGKSGWLSVPASRGVAPPGAMG 135
G + + G RG P LP RG A P+ G P QG + V PPGA G
Sbjct: 2135 GIKGDRGEPGPRGQDGNPGLPGERGMAGPE--GKPGLQGPRGPPGPVGGHGDPGPPGAPG 2192
Query: 136 ILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGVGSESPPRWGCLPTCDGGPKSQ 195
+ G +G P G PP G+ G G+ P P G Q
Sbjct: 2193 LAGPAGPQGPSGLKGEPGETG---PPGRGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQ 2249
Query: 196 GGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCDGDPKSRGGRG 252
G+ G P A G RG GV SP L G P+ G+P G G
Sbjct: 2250 VGETGKPGAPGR-----DGASGKDGDRGSPGVPGSPGLPGPVGPK--GEPGPTGAPG 2299
Score = 50.8 bits (120), Expect = 1e-06
Identities = 75/269 (27%), Positives = 91/269 (33%), Gaps = 38/269 (14%)
Query: 19 PGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAW------GGRGAGSQSLPRG 72
PG+ GP G+ G V P A G A GG A G +G PRG
Sbjct: 2280 PGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGEPGAKGDRGLPGPRG 2339
Query: 73 GASARCDGGPKSQGGKRGWLSVPSLPRG-----GASPQCDGGPKSQGGKSGWLSVPASRG 127
G G+ G P P+G G GP G G L +P G
Sbjct: 2340 EKGEAGRAGEPGDPGEDGQKGAPG-PKGFKGDPGVGVPGSPGPPGPPGVKGDLGLPGLPG 2398
Query: 128 ----------VAPPGAMGILRARGGRGTG---SQSPLPASLGVP-------PPPAMGVQR 167
P G MG G RG + +P LG P PP A G++
Sbjct: 2399 APGVVGFPGQTGPRGEMGQPGPSGERGLAGPPGREGIPGPLGPPGPPGSVGPPGASGLKG 2458
Query: 168 ARGGRGVGSESPPRWGCLPTCDG--GPKSQGGKRGWLSVPAS-WVVSPTPAMGVLRARGG 224
+G GVG P P G G Q G RG P S +G +G
Sbjct: 2459 DKGDPGVGLPGPRGERGEPGIRGEDGRPGQEGPRGLTGPPGSRGERGEKGDVGSAGLKGD 2518
Query: 225 RGVALSPYLMGGASPR-CDGDPKSRGGRG 252
+G S ++G PR GD RG RG
Sbjct: 2519 KGD--SAVILGPPGPRGAKGDMGERGPRG 2545
Score = 50.1 bits (118), Expect = 2e-06
Identities = 68/248 (27%), Positives = 85/248 (34%), Gaps = 41/248 (16%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASAR 77
PPG K + G G A R P G G A G +G+ PRG R
Sbjct: 1288 PPGSATAKGERGFPG-----ADGRPGSPGRAGNPGTPG--APGLKGSPGLPGPRGDPGER 1340
Query: 78 CDGGPKSQGGKRGWL---SVPSLP--RGGASPQCDGGPKSQGGKSGWLSVPASRGVAPPG 132
GPK + G G + P LP +G P GP+ G G P G A G
Sbjct: 1341 GPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKG 1400
Query: 133 AMGILRARGGRGTGSQSPLPASLGVP-------PPPAMGVQRARGGRGVGSESPPRWGCL 185
G RG G G P G+P P +G +G +G + P L
Sbjct: 1401 DKGDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPG---L 1457
Query: 186 PTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCD-GD 244
P G P QG P G + +G RG P +G A + + G
Sbjct: 1458 PGQPGSPGEQG---------------PRGPPGAIGPKGDRGF---PGPLGEAGEKGERGP 1499
Query: 245 PKSRGGRG 252
P G RG
Sbjct: 1500 PGPAGSRG 1507
Score = 50.1 bits (118), Expect = 2e-06
Identities = 73/249 (29%), Positives = 89/249 (35%), Gaps = 26/249 (10%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGR-AWGGRGAGSQSLPRGGASA 76
P G GP + G+ G A P + G RG A G +G P G A
Sbjct: 1434 PQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGE 1493
Query: 77 RCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGP------KSQGGKSGWLSVPASRGVAP 130
+ + GP G RG V P G P+ GP K + G+ G +V P
Sbjct: 1494 KGERGPPGPAGSRGLPGVAGRP-GAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGP 1552
Query: 131 PGAMGILRARGGRG-TGSQSPL-PASLGVPPPPAMGVQRARGGRG----VGSESPPRWGC 184
G G + G RG TG Q P L +P P G + G RG G PP
Sbjct: 1553 KGEKGDVGPAGPRGATGVQGERGPPGLVLPGDP--GPKGDPGDRGPIGLTGRAGPPG--- 1607
Query: 185 LPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPR-CDG 243
D GP + G G P V P G + +G G P L G A R G
Sbjct: 1608 ----DSGPPGEKGDPGRPGPPGP--VGPRGRDGEVGEKGDEGPPGDPGLPGKAGERGLRG 1661
Query: 244 DPKSRGGRG 252
P RG G
Sbjct: 1662 APGVRGPVG 1670
Score = 48.9 bits (115), Expect = 4e-06
Identities = 65/251 (25%), Positives = 87/251 (34%), Gaps = 29/251 (11%)
Query: 19 PGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASARC 78
PG GPK G+ G P PP V G R G G Q PRG
Sbjct: 1687 PGSSGPKGDRGEPG---------PPGPPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDPG 1737
Query: 79 DGGPKSQGGKRGWLSVPSLP-----RGGASPQCDGGPKSQGGKSGWLSVPASRG------ 127
G + G G+ P RG A + D GP G+SG P + G
Sbjct: 1738 LPGAPGERGIEGFRGPPGPQGDPGVRGPAGEKGDRGPPGLDGRSGLDGKPGAAGPSGPNG 1797
Query: 128 ----VAPPGAMGILRARGGRGTGSQSPLPASLGVPPPPAM-GVQRARGGRGVGSESPPRW 182
PG G+ RG +G S P G P G+ G G E +
Sbjct: 1798 AAGKAGDPGRDGLPGLRGEQGLPGPSGPPGLPGKPGEDGKPGLNGKNGEPGDPGEDGRKG 1857
Query: 183 GCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCD 242
+ G + + G +G P ++ P G+ G G P + GG P+ D
Sbjct: 1858 EKGDSGASGREGRDGPKGERGAPG--ILGPQGPPGLPGPVGPPGQGF-PGVPGGTGPKGD 1914
Query: 243 -GDPKSRGGRG 252
G+ S+G +G
Sbjct: 1915 RGETGSKGEQG 1925
Score = 45.8 bits (107), Expect = 4e-05
Identities = 66/257 (25%), Positives = 92/257 (35%), Gaps = 42/257 (16%)
Query: 13 ERGASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARG--GRAW--GGRGAGSQS 68
ERG PGI G + G+ G + PP + G +G G A G +G +
Sbjct: 2473 ERGE--PGIRGEDGRPGQEGPRGLTG-----PPGSRGERGEKGDVGSAGLKGDKGDSAVI 2525
Query: 69 L----PRGGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPA 124
L PRG + GP+ G +G PRG D G K + G G +P
Sbjct: 2526 LGPPGPRGAKGDMGERGPRGLDGDKG-------PRGDNGDPGDKGSKGEPGDKGSAGLPG 2578
Query: 125 SRG-VAPPGAMGILRARGGRGTGSQSPLPASLG-------VPPPPAMGVQRARGGRGVGS 176
RG + P G G G G+ + +P G + P G + +G G+
Sbjct: 2579 LRGLLGPQGQPGAAGIPGDPGSPGKDGVPGIRGEKGDVGFMGPRGLKGERGVKGACGLDG 2638
Query: 177 ESPPRWGCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAM-GVLRARGGRGVALSPYLMG 235
E + P G G+ G VP S P G++ +G RG
Sbjct: 2639 EKGDKGEAGPPGRPGLAGHKGEMGEPGVPGQ---SGAPGKEGLIGPKGDRGF-------- 2687
Query: 236 GASPRCDGDPKSRGGRG 252
P GD +G RG
Sbjct: 2688 DGQPGPKGDQGEKGERG 2704
Score = 45.4 bits (106), Expect = 5e-05
Identities = 68/252 (26%), Positives = 84/252 (33%), Gaps = 51/252 (20%)
Query: 16 ASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGAS 75
A PPG GP + G G R PP + G RG + +G
Sbjct: 1603 AGPPGDSGPPGEKGDPG--------RPGPPGPV-----------GPRGRDGEVGEKGDEG 1643
Query: 76 ARCDGGPKSQGGKRGWLSVPSL--PRGGASPQCDGGPKSQGGKSGWLSVPASRG-VAPPG 132
D G + G+RG P + P G Q D G + G G RG PPG
Sbjct: 1644 PPGDPGLPGKAGERGLRGAPGVRGPVGEKGDQGDPGEDGRNGSPGSSGPKGDRGEPGPPG 1703
Query: 133 AMGIL-------RARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGV-GSESPPRWGC 184
G L R +G G Q G P G+ A G RG+ G PP
Sbjct: 1704 PPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDP-----GLPGAPGERGIEGFRGPPG--- 1755
Query: 185 LPTCDGGPKSQGGKRGWLSVPA----SWVVSPTPAMGVLRARGGRGVALSPYLMGGASPR 240
P D G + G++G P S + A G G G A P
Sbjct: 1756 -PQGDPGVRGPAGEKGDRGPPGLDGRSGLDGKPGAAGPSGPNGAAGKA--------GDPG 1806
Query: 241 CDGDPKSRGGRG 252
DG P RG +G
Sbjct: 1807 RDGLPGLRGEQG 1818
Score = 44.3 bits (103), Expect = 1e-04
Identities = 61/222 (27%), Positives = 75/222 (33%), Gaps = 42/222 (18%)
Query: 8 NFTVEERGASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQ 67
+FT + R P + PK Q G+ G + P P + G GA
Sbjct: 1237 SFTTQPR-PEPCPVYCPKGQKGEPGEMGLRGQVGPPGDPGLP----------GRTGAPGP 1285
Query: 68 SLPRGGASAR-------CDGGPKSQG--GKRGWLSVPSL--------PRGGASPQCDGGP 110
P G A+A+ DG P S G G G P L PRG + GP
Sbjct: 1286 QGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGP 1345
Query: 111 KSQGGKSGWLSVPASRGVAPPGAMGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARG 170
K + G G V G PG G G G P G P P ++ +G
Sbjct: 1346 KGEPGAPG--QVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKG 1403
Query: 171 GRGV-GSESPPRWGC------LPTCDGGPKSQG-----GKRG 200
RG G P G LP G P QG GK+G
Sbjct: 1404 DRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKG 1445
Score = 43.9 bits (102), Expect = 1e-04
Identities = 86/291 (29%), Positives = 103/291 (35%), Gaps = 76/291 (26%)
Query: 13 ERGASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRA-WGGRGA----GSQ 67
ERGA PGI GP+ G G PP G GG G RG G Q
Sbjct: 1876 ERGA--PGILGPQGPPGLPGPVG---------PPGQGFPGVPGGTGPKGDRGETGSKGEQ 1924
Query: 68 SLP-----RG--GASARCDGGPKSQGGKRG---------------WLSVPSLPRGGASPQ 105
LP RG G+ D ++ G K +L VP RG P+
Sbjct: 1925 GLPGERGLRGEPGSVPNVDRLLETAGIKASALREIVETWDESSGSFLPVPERRRG---PK 1981
Query: 106 CDGGPKSQGGKSGWLSVPASRGV-------APPGAMGI-LRARGGRGTGSQSPLPASLGV 157
D G + GK G + P RG+ P G G+ L RG G + P G+
Sbjct: 1982 GDSGEQGPPGKEGPIGFPGERGLKGDRGDPGPQGPPGLALGERGPPGPSGLAGEPGKPGI 2041
Query: 158 P--PPPAMGVQRA-----RGGRG-------VGSESPPRWGCLPTCDGGPKSQGGKRGWLS 203
P P A GV A RG RG G + PP LP G P G
Sbjct: 2042 PGLPGRAGGVGEAGRPGERGERGEKGERGEQGRDGPPG---LPGTPGPPGPPG------- 2091
Query: 204 VPASWVVSPTPAM-GVLRARGGRGVALSPYLMGGASPRCD-GDPKSRGGRG 252
P V P P + G G +G P G P+ D G P +G RG
Sbjct: 2092 -PKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRG 2141
Score = 43.5 bits (101), Expect = 2e-04
Identities = 66/237 (27%), Positives = 80/237 (33%), Gaps = 48/237 (20%)
Query: 23 GPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAW-GGRG-AGSQSLPRGGASARCDG 80
GPK G+ G PP G + G R G RG G Q P R
Sbjct: 1979 GPKGDSGEQG-----------PPGKEGPIGFPGERGLKGDRGDPGPQGPPGLALGERGPP 2027
Query: 81 GPKSQGGKRGWLSVPSLP--RGGASPQCDGGPKSQGGKSGWLSVPASRGVAPPGAMGILR 138
GP G+ G +P LP GG G + + G+ G
Sbjct: 2028 GPSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKG-------------------- 2067
Query: 139 ARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGV-GSESPPRWGCLPTCDGGPKSQG- 196
RG +G LP + G P PP V G G+ G + PP L G P S G
Sbjct: 2068 ERGEQGRDGPPGLPGTPGPPGPPGPKVSVDEPGPGLSGEQGPPG---LKGAKGEPGSNGD 2124
Query: 197 -GKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCDGDPKSRGGRG 252
G +G VP P RG G P G A P +G P +G RG
Sbjct: 2125 QGPKGDRGVPGIKGDRGEPG-----PRGQDGNPGLPGERGMAGP--EGKPGLQGPRG 2174
Score = 40.0 bits (92), Expect = 0.002
Identities = 35/130 (26%), Positives = 49/130 (37%), Gaps = 16/130 (12%)
Query: 19 PGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGG----RGAGSQSLPRGGA 74
PG+ G K + G+ G + P G++ +G R + G +G + RG
Sbjct: 2652 PGLAGHKGEMGEPG-----VPGQSGAPGKEGLIGPKGDRGFDGQPGPKGDQGEKGERGTP 2706
Query: 75 SARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGVAPPGAM 134
GP G G P P G P+ GP+ G+ G P R V PG
Sbjct: 2707 GIGGFPGPSGNDGSAG----PPGPPGSVGPR---GPEGLQGQKGERGPPGERVVGAPGVP 2759
Query: 135 GILRARGGRG 144
G RG +G
Sbjct: 2760 GAPGERGEQG 2769
Score = 32.0 bits (71), Expect = 0.54
Identities = 44/203 (21%), Positives = 64/203 (31%), Gaps = 25/203 (12%)
Query: 16 ASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAW-----GGRGAGSQSLP 70
+ P G G G+ G + +P P L + G G G
Sbjct: 1793 SGPNGAAGKAGDPGRDGLPGLRGEQGLPGPSGPPGLPGKPGEDGKPGLNGKNGEPGDPGE 1852
Query: 71 RGGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGVAP 130
G + D G + G+ G P+G GP+ G G + P
Sbjct: 1853 DGRKGEKGDSGASGREGRDG-------PKGERGAPGILGPQGPPGLPGPVGPPGQGFPGV 1905
Query: 131 PGAMGILRARGGRGTGSQSPLPASLGV--PPPPAMGVQRARGGRGVGS-----------E 177
PG G RG G+ + LP G+ P V R G+ + E
Sbjct: 1906 PGGTGPKGDRGETGSKGEQGLPGERGLRGEPGSVPNVDRLLETAGIKASALREIVETWDE 1965
Query: 178 SPPRWGCLPTCDGGPKSQGGKRG 200
S + +P GPK G++G
Sbjct: 1966 SSGSFLPVPERRRGPKGDSGEQG 1988
>gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens]
Length = 957
Score = 55.1 bits (131), Expect = 6e-08
Identities = 68/257 (26%), Positives = 98/257 (38%), Gaps = 48/257 (18%)
Query: 12 EERGASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLP- 70
E+ A PG+ GP + G+ G + S P G + G G G +P
Sbjct: 555 EKGNAGFPGLPGPAGEPGRHGKDGLMGS-----PGFKGEAGSPGAPGQDGT-RGEPGIPG 608
Query: 71 ----RGGASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASR 126
RG + + GP Q GK+G +P L SP G P S+G K P +
Sbjct: 609 FPGNRGLMGQKGEIGPPGQQGKKGAPGMPGLMGSNGSPGQPGTPGSKGSK----GEPGIQ 664
Query: 127 GVAPPGAMGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGVGSESPPRWGCLP 186
G+ PGA G+ G G+ + P +G+P G+Q +G +G E
Sbjct: 665 GM--PGASGLKGEPGATGSPGE---PGYMGLP-----GIQGKKGDKGNQGEK-------- 706
Query: 187 TCDGGPKSQGGKRGWLSVPASWVV----------SPTPAMGVLRARGGRGVALSPYLMGG 236
G + Q G+ G +P + GV A G +G + LMG
Sbjct: 707 ----GIQGQKGENGRQGIPGQQGIQGHHGAKGERGEKGEPGVRGAIGSKGESGVDGLMGP 762
Query: 237 ASPRCD-GDPKSRGGRG 252
A P+ GDP +G G
Sbjct: 763 AGPKGQPGDPGPQGPPG 779
Score = 34.3 bits (77), Expect = 0.11
Identities = 53/210 (25%), Positives = 69/210 (32%), Gaps = 36/210 (17%)
Query: 19 PGIGGPKSQWGKSGWFSIAA----SWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGA 74
PGI G K G G I + R P G+ G + G RG + RG
Sbjct: 691 PGIQGKKGDKGNQGEKGIQGQKGENGRQGIPGQQGIQGHHGAK--GERGEKGEPGVRGAI 748
Query: 75 SARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKS---------------------- 112
++ + G G G P P P DG P
Sbjct: 749 GSKGESGVDGLMGPAGPKGQPGDPGPQGPPGLDGKPGREFSEQFIRQVCTDVIRAQLPVL 808
Query: 113 -QGGK----SGWLSVPASRGV-APPGAMGILRARGGRGTGSQSPLPASLGVPPPPAMGVQ 166
Q G+ LS S G+ PPG +G RG G + +P +GVP P GV+
Sbjct: 809 LQSGRIRNCDHCLSQHGSPGIPGPPGPIGPEGPRGLPGLPGRDGVPGLVGVPGRP--GVR 866
Query: 167 RARGGRGVGSESPPRWGCLPTCDGGPKSQG 196
+G G E + P G P G
Sbjct: 867 GLKGLPGRNGEKGSQGFGYPGEQGPPGPPG 896
>gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [Homo
sapiens]
Length = 828
Score = 55.1 bits (131), Expect = 6e-08
Identities = 72/244 (29%), Positives = 88/244 (36%), Gaps = 43/244 (17%)
Query: 19 PGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASARC 78
PG GP + G G + P P GV A+GG G RG P+G R
Sbjct: 378 PGRRGPPGEIGAKGSKGYQGNSGAPGSP--GVKGAKGGP--GPRG------PKGEPGRRG 427
Query: 79 DGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGV----APPGAM 134
D G K G G P +G P+ GP+ G+ G RG+ P GA+
Sbjct: 428 DPGTKGSPGSDG----PKGEKGDPGPE---GPRGLAGEVGNKGAKGDRGLPGPRGPQGAL 480
Query: 135 GILRARGGRGT-GSQSPL-----PASLGVPPPPAMGVQRARGGRGVGSESPPRWGCLPTC 188
G +G RG G P P G P P RG G E PR
Sbjct: 481 GEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRG 540
Query: 189 DGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCDGDPKSR 248
D G K + G++G PA P P G RG RGV P +G+P
Sbjct: 541 DFGLKGEPGRKGEKGEPA----DPGPP-GEPGPRGPRGV-----------PGPEGEPGPP 584
Query: 249 GGRG 252
G G
Sbjct: 585 GDPG 588
>gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo
sapiens]
Length = 918
Score = 55.1 bits (131), Expect = 6e-08
Identities = 72/244 (29%), Positives = 88/244 (36%), Gaps = 43/244 (17%)
Query: 19 PGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASARC 78
PG GP + G G + P P GV A+GG G RG P+G R
Sbjct: 378 PGRRGPPGEIGAKGSKGYQGNSGAPGSP--GVKGAKGGP--GPRG------PKGEPGRRG 427
Query: 79 DGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGV----APPGAM 134
D G K G G P +G P+ GP+ G+ G RG+ P GA+
Sbjct: 428 DPGTKGSPGSDG----PKGEKGDPGPE---GPRGLAGEVGNKGAKGDRGLPGPRGPQGAL 480
Query: 135 GILRARGGRGT-GSQSPL-----PASLGVPPPPAMGVQRARGGRGVGSESPPRWGCLPTC 188
G +G RG G P P G P P RG G E PR
Sbjct: 481 GEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRG 540
Query: 189 DGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCDGDPKSR 248
D G K + G++G PA P P G RG RGV P +G+P
Sbjct: 541 DFGLKGEPGRKGEKGEPA----DPGPP-GEPGPRGPRGV-----------PGPEGEPGPP 584
Query: 249 GGRG 252
G G
Sbjct: 585 GDPG 588
>gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Homo
sapiens]
Length = 1019
Score = 55.1 bits (131), Expect = 6e-08
Identities = 72/244 (29%), Positives = 88/244 (36%), Gaps = 43/244 (17%)
Query: 19 PGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASARC 78
PG GP + G G + P P GV A+GG G RG P+G R
Sbjct: 378 PGRRGPPGEIGAKGSKGYQGNSGAPGSP--GVKGAKGGP--GPRG------PKGEPGRRG 427
Query: 79 DGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGV----APPGAM 134
D G K G G P +G P+ GP+ G+ G RG+ P GA+
Sbjct: 428 DPGTKGSPGSDG----PKGEKGDPGPE---GPRGLAGEVGNKGAKGDRGLPGPRGPQGAL 480
Query: 135 GILRARGGRGT-GSQSPL-----PASLGVPPPPAMGVQRARGGRGVGSESPPRWGCLPTC 188
G +G RG G P P G P P RG G E PR
Sbjct: 481 GEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRG 540
Query: 189 DGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCDGDPKSR 248
D G K + G++G PA P P G RG RGV P +G+P
Sbjct: 541 DFGLKGEPGRKGEKGEPA----DPGPP-GEPGPRGPRGV-----------PGPEGEPGPP 584
Query: 249 GGRG 252
G G
Sbjct: 585 GDPG 588
>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 55.1 bits (131), Expect = 6e-08
Identities = 71/250 (28%), Positives = 85/250 (34%), Gaps = 41/250 (16%)
Query: 15 GASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARG-GRAWGGRGAGSQSLPRGG 73
G PG GPK G G + P G + A G G G G P G
Sbjct: 349 GIGKPGFPGPKGDRGMGG-----VPGALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMGP 403
Query: 74 ASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRG-VAPPG 132
A GPK +GG G PQ GPK + G G+ P G V PPG
Sbjct: 404 PGAIGFPGPKGEGGIVG-------------PQGPPGPKGEPGLQGFPGKPGFLGEVGPPG 450
Query: 133 AMGILRARGGRGTGSQSPLPASLGVPP----------PPAMGVQRARGGRGVGSESPPRW 182
G+ G +G Q +P GVP P G+Q G G+G S P
Sbjct: 451 MRGLPGPIGPKGEAGQKGVPGLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIGGPSGP-- 508
Query: 183 GCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCD 242
P GPK + G G P + P + L G+ AL P P
Sbjct: 509 -IGPPGIPGPKGEPGLPG----PPGFPGIGKPGVAGLHGPPGKPGALGPQ----GQPGLP 559
Query: 243 GDPKSRGGRG 252
G P G G
Sbjct: 560 GPPGPPGPPG 569
Score = 53.5 bits (127), Expect = 2e-07
Identities = 60/200 (30%), Positives = 77/200 (38%), Gaps = 24/200 (12%)
Query: 65 GSQSLPRGG-----ASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQG----G 115
G +++P+ G AS R + GP+ + G RG P LP G P G P QG G
Sbjct: 100 GKEAVPKKGKEIPLASLRGEQGPRGEPGPRGPPGPPGLP-GHGIPGIKGKPGPQGYPGVG 158
Query: 116 KSGWLSVPASRGVAPPGAMGILRARGGRG-TGSQSP--LPASLGVPPPPAMGVQRARGGR 172
K G +P PGAMG+ A+G G G P +P G P P + GG
Sbjct: 159 KPGMPGMPGK-----PGAMGMPGAKGEIGQKGEIGPMGIPGPQGPPGPHGLPGIGKPGGP 213
Query: 173 GVGSESPPRWGCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPY 232
G+ + P+ D GPK G +G A GV G G
Sbjct: 214 GLPGQPGPKG------DRGPKGLPGPQGLRGPKGDKGFGMPGAPGVKGPPGMHGPPGPVG 267
Query: 233 LMGGASPRCDGDPKSRGGRG 252
L G P G P +G G
Sbjct: 268 LPGVGKPGVTGFPGPQGPLG 287
Score = 43.5 bits (101), Expect = 2e-04
Identities = 68/253 (26%), Positives = 87/253 (34%), Gaps = 41/253 (16%)
Query: 15 GASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGA 74
G PG GPK G G P G+ +G + +G GA P G
Sbjct: 212 GPGLPGQPGPKGDRGPKGL-----------PGPQGLRGPKGDKGFGMPGAPGVKGPPG-- 258
Query: 75 SARCDGGPKSQG----GKRGWLSVPSLPRGGASPQCDGGPKSQG--GKSGWLSVPASRGV 128
G P G GK G P P G P QG G G P G+
Sbjct: 259 ---MHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGAPGEPGPQGPIGVPGVQGPPGIPGI 315
Query: 129 APPGAMGILRARGGRGTGSQSPLPASLGVPPPPAM---------GVQRARGGRGVGSESP 179
PG GI G G + LP G+P PP + G + RG GV
Sbjct: 316 GKPGQDGIPGQPGFPGGKGEQGLP---GLPGPPGLPGIGKPGFPGPKGDRGMGGVPGALG 372
Query: 180 PRWGCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASP 239
PR P G G+ G +P + P A+G +G G+ + P G P
Sbjct: 373 PRGEKGPIGAPGIGGPPGEPGLPGIPGP--MGPPGAIGFPGPKGEGGI-VGP--QGPPGP 427
Query: 240 RCDGDPKSRGGRG 252
+ G+P +G G
Sbjct: 428 K--GEPGLQGFPG 438
Score = 39.7 bits (91), Expect = 0.003
Identities = 51/194 (26%), Positives = 64/194 (32%), Gaps = 22/194 (11%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPR--GGAS 75
P G GPK + G G+ PP M L G G LP G
Sbjct: 421 PQGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVPGLPGVPGLLG 480
Query: 76 ARCDGGPKSQGGKRGWLSVPSL--PRGGASPQCDGGPKSQGGKSGWLSVPASRGVAPPGA 133
+ + G G +G +P + P G P GPK + G G P G+ PG
Sbjct: 481 PKGEPGIPGDQGLQGPPGIPGIGGPSGPIGPPGIPGPKGEPGLPG---PPGFPGIGKPGV 537
Query: 134 MGILRARG---GRGTGSQSPLPASLG-----------VPPPPAMGVQRARGGRGVGSESP 179
G+ G G Q LP G P PP G G G+ P
Sbjct: 538 AGLHGPPGKPGALGPQGQPGLPGPPGPPGPPGPPAVMPPTPPPQGEYLPDMGLGIDGVKP 597
Query: 180 PR-WGCLPTCDGGP 192
P +G +GGP
Sbjct: 598 PHAYGAKKGKNGGP 611
Score = 39.3 bits (90), Expect = 0.003
Identities = 65/242 (26%), Positives = 82/242 (33%), Gaps = 50/242 (20%)
Query: 15 GASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGA 74
G PGI G G G P AMG+ A+G G G +P
Sbjct: 139 GHGIPGIKGKPGPQGYPGVGKPGMPGMPGKPGAMGMPGAKGEIGQKGE-IGPMGIP---- 193
Query: 75 SARCDGGPKSQGGKRGWLSVPSLPR-GGASPQCDGGPKSQGGKSGWLSVPASRGVAPPGA 133
GP+ G G +P + + GG GPK G G PG
Sbjct: 194 ------GPQGPPGPHG---LPGIGKPGGPGLPGQPGPKGDRGPKGL-----------PGP 233
Query: 134 MGILRARGGRGTGSQSPLPASLGVPPPPAM-GVQRARGGRGVGSESPPRWGCLPTCDGGP 192
G+ +G +G G +P + GV PP M G G GVG P G P
Sbjct: 234 QGLRGPKGDKGFG----MPGAPGVKGPPGMHGPPGPVGLPGVGK---------PGVTGFP 280
Query: 193 KSQG--GKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCDGDPKSRGG 250
QG GK G P P +GV +G G+ P + G P GG
Sbjct: 281 GPQGPLGKPGAPGEP-----GPQGPIGVPGVQGPPGI---PGIGKPGQDGIPGQPGFPGG 332
Query: 251 RG 252
+G
Sbjct: 333 KG 334
Score = 32.3 bits (72), Expect = 0.41
Identities = 39/143 (27%), Positives = 46/143 (32%), Gaps = 14/143 (9%)
Query: 19 PGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASARC 78
PGIGGP G G +P PP G G G P G A
Sbjct: 500 PGIGGPSGPIGPPGIPGPKGEPGLPGPP--------GFPGIGKPGVAGLHGPPGKPGAL- 550
Query: 79 DGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGVAPPGAMGILR 138
GP+ Q G G P P A P+ + L + GV PP A G +
Sbjct: 551 --GPQGQPGLPGPPGPPGPPGPPAVMPPTPPPQGEYLPDMGLGID---GVKPPHAYGAKK 605
Query: 139 ARGGRGTGSQSPLPASLGVPPPP 161
+ G A L P PP
Sbjct: 606 GKNGGPAYEMPAFTAELTAPFPP 628
>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 55.1 bits (131), Expect = 6e-08
Identities = 71/250 (28%), Positives = 85/250 (34%), Gaps = 41/250 (16%)
Query: 15 GASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARG-GRAWGGRGAGSQSLPRGG 73
G PG GPK G G + P G + A G G G G P G
Sbjct: 349 GIGKPGFPGPKGDRGMGG-----VPGALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMGP 403
Query: 74 ASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRG-VAPPG 132
A GPK +GG G PQ GPK + G G+ P G V PPG
Sbjct: 404 PGAIGFPGPKGEGGIVG-------------PQGPPGPKGEPGLQGFPGKPGFLGEVGPPG 450
Query: 133 AMGILRARGGRGTGSQSPLPASLGVPP----------PPAMGVQRARGGRGVGSESPPRW 182
G+ G +G Q +P GVP P G+Q G G+G S P
Sbjct: 451 MRGLPGPIGPKGEAGQKGVPGLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIGGPSGP-- 508
Query: 183 GCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCD 242
P GPK + G G P + P + L G+ AL P P
Sbjct: 509 -IGPPGIPGPKGEPGLPG----PPGFPGIGKPGVAGLHGPPGKPGALGPQ----GQPGLP 559
Query: 243 GDPKSRGGRG 252
G P G G
Sbjct: 560 GPPGPPGPPG 569
Score = 53.5 bits (127), Expect = 2e-07
Identities = 60/200 (30%), Positives = 77/200 (38%), Gaps = 24/200 (12%)
Query: 65 GSQSLPRGG-----ASARCDGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQG----G 115
G +++P+ G AS R + GP+ + G RG P LP G P G P QG G
Sbjct: 100 GKEAVPKKGKEIPLASLRGEQGPRGEPGPRGPPGPPGLP-GHGIPGIKGKPGPQGYPGVG 158
Query: 116 KSGWLSVPASRGVAPPGAMGILRARGGRG-TGSQSP--LPASLGVPPPPAMGVQRARGGR 172
K G +P PGAMG+ A+G G G P +P G P P + GG
Sbjct: 159 KPGMPGMPGK-----PGAMGMPGAKGEIGQKGEIGPMGIPGPQGPPGPHGLPGIGKPGGP 213
Query: 173 GVGSESPPRWGCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPY 232
G+ + P+ D GPK G +G A GV G G
Sbjct: 214 GLPGQPGPKG------DRGPKGLPGPQGLRGPKGDKGFGMPGAPGVKGPPGMHGPPGPVG 267
Query: 233 LMGGASPRCDGDPKSRGGRG 252
L G P G P +G G
Sbjct: 268 LPGVGKPGVTGFPGPQGPLG 287
Score = 43.5 bits (101), Expect = 2e-04
Identities = 68/253 (26%), Positives = 87/253 (34%), Gaps = 41/253 (16%)
Query: 15 GASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGA 74
G PG GPK G G P G+ +G + +G GA P G
Sbjct: 212 GPGLPGQPGPKGDRGPKGL-----------PGPQGLRGPKGDKGFGMPGAPGVKGPPG-- 258
Query: 75 SARCDGGPKSQG----GKRGWLSVPSLPRGGASPQCDGGPKSQG--GKSGWLSVPASRGV 128
G P G GK G P P G P QG G G P G+
Sbjct: 259 ---MHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGAPGEPGPQGPIGVPGVQGPPGIPGI 315
Query: 129 APPGAMGILRARGGRGTGSQSPLPASLGVPPPPAM---------GVQRARGGRGVGSESP 179
PG GI G G + LP G+P PP + G + RG GV
Sbjct: 316 GKPGQDGIPGQPGFPGGKGEQGLP---GLPGPPGLPGIGKPGFPGPKGDRGMGGVPGALG 372
Query: 180 PRWGCLPTCDGGPKSQGGKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASP 239
PR P G G+ G +P + P A+G +G G+ + P G P
Sbjct: 373 PRGEKGPIGAPGIGGPPGEPGLPGIPGP--MGPPGAIGFPGPKGEGGI-VGP--QGPPGP 427
Query: 240 RCDGDPKSRGGRG 252
+ G+P +G G
Sbjct: 428 K--GEPGLQGFPG 438
Score = 39.7 bits (91), Expect = 0.003
Identities = 51/194 (26%), Positives = 64/194 (32%), Gaps = 22/194 (11%)
Query: 18 PPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPR--GGAS 75
P G GPK + G G+ PP M L G G LP G
Sbjct: 421 PQGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVPGLPGVPGLLG 480
Query: 76 ARCDGGPKSQGGKRGWLSVPSL--PRGGASPQCDGGPKSQGGKSGWLSVPASRGVAPPGA 133
+ + G G +G +P + P G P GPK + G G P G+ PG
Sbjct: 481 PKGEPGIPGDQGLQGPPGIPGIGGPSGPIGPPGIPGPKGEPGLPG---PPGFPGIGKPGV 537
Query: 134 MGILRARG---GRGTGSQSPLPASLG-----------VPPPPAMGVQRARGGRGVGSESP 179
G+ G G Q LP G P PP G G G+ P
Sbjct: 538 AGLHGPPGKPGALGPQGQPGLPGPPGPPGPPGPPAVMPPTPPPQGEYLPDMGLGIDGVKP 597
Query: 180 PR-WGCLPTCDGGP 192
P +G +GGP
Sbjct: 598 PHAYGAKKGKNGGP 611
Score = 39.3 bits (90), Expect = 0.003
Identities = 65/242 (26%), Positives = 82/242 (33%), Gaps = 50/242 (20%)
Query: 15 GASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGA 74
G PGI G G G P AMG+ A+G G G +P
Sbjct: 139 GHGIPGIKGKPGPQGYPGVGKPGMPGMPGKPGAMGMPGAKGEIGQKGE-IGPMGIP---- 193
Query: 75 SARCDGGPKSQGGKRGWLSVPSLPR-GGASPQCDGGPKSQGGKSGWLSVPASRGVAPPGA 133
GP+ G G +P + + GG GPK G G PG
Sbjct: 194 ------GPQGPPGPHG---LPGIGKPGGPGLPGQPGPKGDRGPKGL-----------PGP 233
Query: 134 MGILRARGGRGTGSQSPLPASLGVPPPPAM-GVQRARGGRGVGSESPPRWGCLPTCDGGP 192
G+ +G +G G +P + GV PP M G G GVG P G P
Sbjct: 234 QGLRGPKGDKGFG----MPGAPGVKGPPGMHGPPGPVGLPGVGK---------PGVTGFP 280
Query: 193 KSQG--GKRGWLSVPASWVVSPTPAMGVLRARGGRGVALSPYLMGGASPRCDGDPKSRGG 250
QG GK G P P +GV +G G+ P + G P GG
Sbjct: 281 GPQGPLGKPGAPGEP-----GPQGPIGVPGVQGPPGI---PGIGKPGQDGIPGQPGFPGG 332
Query: 251 RG 252
+G
Sbjct: 333 KG 334
Score = 32.3 bits (72), Expect = 0.41
Identities = 39/143 (27%), Positives = 46/143 (32%), Gaps = 14/143 (9%)
Query: 19 PGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAWGGRGAGSQSLPRGGASARC 78
PGIGGP G G +P PP G G G P G A
Sbjct: 500 PGIGGPSGPIGPPGIPGPKGEPGLPGPP--------GFPGIGKPGVAGLHGPPGKPGAL- 550
Query: 79 DGGPKSQGGKRGWLSVPSLPRGGASPQCDGGPKSQGGKSGWLSVPASRGVAPPGAMGILR 138
GP+ Q G G P P A P+ + L + GV PP A G +
Sbjct: 551 --GPQGQPGLPGPPGPPGPPGPPAVMPPTPPPQGEYLPDMGLGID---GVKPPHAYGAKK 605
Query: 139 ARGGRGTGSQSPLPASLGVPPPP 161
+ G A L P PP
Sbjct: 606 GKNGGPAYEMPAFTAELTAPFPP 628
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.138 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,987,844
Number of Sequences: 37866
Number of extensions: 1176991
Number of successful extensions: 7191
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 749
Number of HSP's that attempted gapping in prelim test: 4361
Number of HSP's gapped (non-prelim): 2148
length of query: 255
length of database: 18,247,518
effective HSP length: 100
effective length of query: 155
effective length of database: 14,460,918
effective search space: 2241442290
effective search space used: 2241442290
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.