COL21A1 10096

Name: COL21A1	Sequence: fasta or formatted (957aa)		NCBI GI: 18780273
Description: collagen, type XXI, alpha 1 precursor		Referenced in: Collagen
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.2 40 2 C cysteine 1.5 14 1 D aspartate 5.0 48 2 E glutamate 5.2 50 2 F phenylalanine 3.0 29 1 G glycine 18.9 181 2 H histidine 1.1 11 2 I isoleucine 5.6 54 1 K lysine 7.1 68 2 L leucine 6.9 66 3 M methionine 1.3 12 1 N asparagine 2.7 26 2 P proline 11.1 106 2 Q glutamine 5.3 51 2 R arginine 4.0 38 2 S serine 5.2 50 2 T threonine 3.6 34 3 V valine 5.5 53 2 W tryptophan 0.4 4 1 Y tyrosine 2.3 22 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 collagen, type XXI, alpha 1 precursor COL22A1 0.301 collagen, type XXII, alpha 1 COL9A1 0.237 alpha 1 type IX collagen isoform 1 precursor COL19A1 0.210 alpha 1 type XIX collagen precursor COL9A1 0.208 alpha 1 type IX collagen isoform 2 precursor COL9A3 0.206 alpha 3 type IX collagen COL4A1 0.204 alpha 1 type IV collagen preproprotein LOC100293055 0.201 PREDICTED: similar to COL22A1 protein COL16A1 0.200 alpha 1 type XVI collagen precursor COL9A2 0.197 alpha 2 type IX collagen COL4A5 0.197 type IV collagen alpha 5 isoform 1 precursor COL4A5 0.195 type IV collagen alpha 5 isoform 3 precursor COL3A1 0.195 collagen type III alpha 1 preproprotein COL4A5 0.195 type IV collagen alpha 5 isoform 2 precursor COL4A3 0.186 alpha 3 type IV collagen isoform 5 precursor COL4A3 0.186 alpha 3 type IV collagen isoform 4 precursor COL4A3 0.186 alpha 3 type IV collagen isoform 2 precursor COL4A3 0.186 alpha 3 type IV collagen isoform 1 precursor COL1A1 0.186 alpha 1 type I collagen preproprotein COL4A4 0.186 alpha 4 type IV collagen precursor COL2A1 0.186 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.186 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL5A3 0.183 collagen, type V, alpha 3 preproprotein COL27A1 0.182 collagen, type XXVII, alpha 1 COL5A2 0.182 alpha 2 type V collagen preproprotein COL5A1 0.182 alpha 1 type V collagen preproprotein COL7A1 0.180 alpha 1 type VII collagen precursor COL4A6 0.180 type IV alpha 6 collagen isoform A precursor COL4A6 0.180 type IV alpha 6 collagen isoform B precursor COL12A1 0.179 collagen, type XII, alpha 1 short isoform precursor ... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.