COL8A1 9623

Name: COL8A1	Sequence: fasta or formatted (744aa)		NCBI GI: 17738302
Description: alpha 1 type VIII collagen precursor		Referenced in: Collagen
Other entries for this name: alt mRNA [744aa] alpha 1 type VIII collagen precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.4 33 2 C cysteine 0.3 2 1 D aspartate 1.5 11 1 E glutamate 3.5 26 1 F phenylalanine 2.3 17 1 G glycine 25.5 190 2 H histidine 1.5 11 1 I isoleucine 4.4 33 1 K lysine 6.3 47 2 L leucine 7.1 53 3 M methionine 3.1 23 1 N asparagine 1.1 8 2 P proline 22.4 167 3 Q glutamine 5.1 38 2 R arginine 1.7 13 1 S serine 1.5 11 2 T threonine 1.1 8 1 V valine 4.0 30 1 W tryptophan 0.1 1 1 Y tyrosine 3.0 22 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 alpha 1 type VIII collagen precursor COL8A1 1.000 alpha 1 type VIII collagen precursor COL8A2 0.450 collagen, type VIII, alpha 2 COL10A1 0.424 type X collagen alpha 1 precursor COL4A5 0.283 type IV collagen alpha 5 isoform 2 precursor COL4A5 0.281 type IV collagen alpha 5 isoform 1 precursor COL4A5 0.280 type IV collagen alpha 5 isoform 3 precursor COL4A1 0.269 alpha 1 type IV collagen preproprotein COL5A1 0.264 alpha 1 type V collagen preproprotein COL11A1 0.260 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.260 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.260 alpha 1 type XI collagen isoform A preproprotein [Ho... COL5A3 0.254 collagen, type V, alpha 3 preproprotein COL2A1 0.254 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.254 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL1A1 0.252 alpha 1 type I collagen preproprotein COL22A1 0.251 collagen, type XXII, alpha 1 COL3A1 0.250 collagen type III alpha 1 preproprotein LOC100293055 0.250 PREDICTED: similar to COL22A1 protein COL5A2 0.250 alpha 2 type V collagen preproprotein COL27A1 0.247 collagen, type XXVII, alpha 1 COL4A4 0.246 alpha 4 type IV collagen precursor COL4A3 0.246 alpha 3 type IV collagen isoform 4 precursor COL4A3 0.246 alpha 3 type IV collagen isoform 2 precursor COL4A3 0.246 alpha 3 type IV collagen isoform 1 precursor COL11A2 0.245 collagen, type XI, alpha 2 isoform 2 preproprotein ... COL11A2 0.245 collagen, type XI, alpha 2 isoform 3 preproprotein ... COL11A2 0.245 collagen, type XI, alpha 2 isoform 1 preproprotein ... COL7A1 0.245 alpha 1 type VII collagen precursor COL16A1 0.245 alpha 1 type XVI collagen precursor Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.