Guide to the Human Genome
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Name: COL8A1 Sequence: fasta or formatted (744aa) NCBI GI: 17738302
Description:

alpha 1 type VIII collagen precursor

Referenced in:

Collagen

Other entries for this name:
alt mRNA [744aa] alpha 1 type VIII collagen precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         33           2
 C cysteine            0.3          2           1
 D aspartate           1.5         11           1
 E glutamate           3.5         26           1
 F phenylalanine       2.3         17           1
 G glycine            25.5        190           2
 H histidine           1.5         11           1
 I isoleucine          4.4         33           1
 K lysine              6.3         47           2
 L leucine             7.1         53           3
 M methionine          3.1         23           1
 N asparagine          1.1          8           2
 P proline            22.4        167           3
 Q glutamine           5.1         38           2
 R arginine            1.7         13           1
 S serine              1.5         11           2
 T threonine           1.1          8           1
 V valine              4.0         30           1
 W tryptophan          0.1          1           1
 Y tyrosine            3.0         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   alpha 1 type VIII collagen precursor 
COL8A1                1.000   alpha 1 type VIII collagen precursor 
COL8A2                0.450   collagen, type VIII, alpha 2 
COL10A1               0.424   type X collagen alpha 1 precursor 
COL4A5                0.283   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.281   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.280   type IV collagen alpha 5 isoform 3 precursor 
COL4A1                0.269   alpha 1 type IV collagen preproprotein 
COL5A1                0.264   alpha 1 type V collagen preproprotein 
COL11A1               0.260   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.260   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.260   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL5A3                0.254   collagen, type V, alpha 3 preproprotein 
COL2A1                0.254   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.254   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL1A1                0.252   alpha 1 type I collagen preproprotein 
COL22A1               0.251   collagen, type XXII, alpha 1 
COL3A1                0.250   collagen type III alpha 1 preproprotein 
LOC100293055          0.250   PREDICTED: similar to COL22A1 protein 
COL5A2                0.250   alpha 2 type V collagen preproprotein 
COL27A1               0.247   collagen, type XXVII, alpha 1 
COL4A4                0.246   alpha 4 type IV collagen precursor 
COL4A3                0.246   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.246   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.246   alpha 3 type IV collagen isoform 1 precursor 
COL11A2               0.245   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.245   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.245   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL7A1                0.245   alpha 1 type VII collagen precursor 
COL16A1               0.245   alpha 1 type XVI collagen precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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