Guide to the Human Genome
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Name: LOC100134002 Sequence: fasta or formatted (120aa) NCBI GI: 169206162
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8          7           1
 C cysteine            5.8          7           1
 D aspartate           3.3          4           2
 E glutamate           3.3          4           1
 F phenylalanine       0.0          0           0
 G glycine            20.0         24           2
 H histidine           0.0          0           0
 I isoleucine          0.8          1           1
 K lysine              3.3          4           1
 L leucine            10.0         12           2
 M methionine          0.8          1           1
 N asparagine          0.0          0           0
 P proline            14.2         17           4
 Q glutamine           1.7          2           1
 R arginine           12.5         15           1
 S serine             10.8         13           1
 T threonine           0.0          0           0
 V valine              6.7          8           1
 W tryptophan          0.8          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100134283          0.506   PREDICTED: hypothetical protein 
OVOS                  0.126   PREDICTED: ovostatin 
COL5A1                0.095   alpha 1 type V collagen preproprotein 
COL1A1                0.087   alpha 1 type I collagen preproprotein 
COL11A1               0.074   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.074   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.074   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL27A1               0.065   collagen, type XXVII, alpha 1 
COL2A1                0.065   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.065   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL28A1               0.065   collagen, type XXVIII precursor 
COL7A1                0.065   alpha 1 type VII collagen precursor 
COL9A2                0.065   alpha 2 type IX collagen 
COL4A3                0.061   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.061   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.061   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.061   alpha 3 type IV collagen isoform 1 precursor 
COL5A2                0.056   alpha 2 type V collagen preproprotein 
COL11A2               0.056   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.056   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.056   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL13A1               0.056   alpha 1 type XIII collagen isoform 12 
COL24A1               0.056   collagen, type XXIV, alpha 1 
COL19A1               0.056   alpha 1 type XIX collagen precursor 
COL5A3                0.056   collagen, type V, alpha 3 preproprotein 
COL1A2                0.052   alpha 2 type I collagen 
COL4A1                0.052   alpha 1 type IV collagen preproprotein 
COL3A1                0.052   collagen type III alpha 1 preproprotein 
COL9A1                0.052   alpha 1 type IX collagen isoform 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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