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Search of human proteins with 239755454
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755454 PREDICTED: hypothetical protein [Homo sapiens]
(305 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755454 PREDICTED: hypothetical protein [Homo sapiens] 648 0.0
gi|239744258 PREDICTED: hypothetical protein LOC100128703 [Homo ... 590 e-169
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 80 3e-15
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 77 2e-14
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 76 4e-14
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 76 4e-14
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 76 4e-14
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 76 4e-14
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 74 2e-13
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 73 3e-13
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 73 3e-13
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 73 4e-13
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 72 6e-13
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens] 72 8e-13
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 71 1e-12
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 71 1e-12
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 71 1e-12
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 71 1e-12
gi|5803080 macrophage receptor with collagenous structure [Homo ... 70 2e-12
gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [H... 70 2e-12
gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho... 70 2e-12
gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Hom... 70 2e-12
gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens] 69 4e-12
gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo s... 69 5e-12
gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo s... 69 5e-12
gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo ... 69 5e-12
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens] 69 5e-12
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens] 69 5e-12
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 69 7e-12
gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens] 69 7e-12
>gi|239755454 PREDICTED: hypothetical protein [Homo sapiens]
Length = 305
Score = 648 bits (1672), Expect = 0.0
Identities = 305/305 (100%), Positives = 305/305 (100%)
Query: 1 MTPSRAQEGPPRVERAECGASAGALTIVSSHGGDSDKDLCARTQIYGAQPREDQMGSVEK 60
MTPSRAQEGPPRVERAECGASAGALTIVSSHGGDSDKDLCARTQIYGAQPREDQMGSVEK
Sbjct: 1 MTPSRAQEGPPRVERAECGASAGALTIVSSHGGDSDKDLCARTQIYGAQPREDQMGSVEK 60
Query: 61 LTTSAFLSAKPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVAS 120
LTTSAFLSAKPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVAS
Sbjct: 61 LTTSAFLSAKPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVAS 120
Query: 121 PGEKGECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQK 180
PGEKGECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQK
Sbjct: 121 PGEKGECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQK 180
Query: 181 GECGVPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECG 240
GECGVPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECG
Sbjct: 181 GECGVPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECG 240
Query: 241 VPWREGAVWRPLDRRGSVASPGEKGECGVRWREGRVWYSLDKRGSVPAALASQRHALLAL 300
VPWREGAVWRPLDRRGSVASPGEKGECGVRWREGRVWYSLDKRGSVPAALASQRHALLAL
Sbjct: 241 VPWREGAVWRPLDRRGSVASPGEKGECGVRWREGRVWYSLDKRGSVPAALASQRHALLAL 300
Query: 301 PQPQG 305
PQPQG
Sbjct: 301 PQPQG 305
>gi|239744258 PREDICTED: hypothetical protein LOC100128703 [Homo
sapiens]
Length = 389
Score = 590 bits (1521), Expect = e-169
Identities = 276/286 (96%), Positives = 279/286 (97%)
Query: 1 MTPSRAQEGPPRVERAECGASAGALTIVSSHGGDSDKDLCARTQIYGAQPREDQMGSVEK 60
MTPSRAQEGPPRVERAECGASAGALTIVSSHGGDSDKDLCARTQIYGAQPREDQMGSVEK
Sbjct: 1 MTPSRAQEGPPRVERAECGASAGALTIVSSHGGDSDKDLCARTQIYGAQPREDQMGSVEK 60
Query: 61 LTTSAFLSAKPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVAS 120
LTTSAFLSAKPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVAS
Sbjct: 61 LTTSAFLSAKPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVAS 120
Query: 121 PGEKGECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQK 180
PGEKGECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQK
Sbjct: 121 PGEKGECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQK 180
Query: 181 GECGVPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECG 240
GECGVPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECG
Sbjct: 181 GECGVPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECG 240
Query: 241 VPWREGAVWRPLDRRGSVASPGEKGECGVRWREGRVWYSLDKRGSV 286
VPWREG VWRPL+RRGSVASPGEKGECGV W EG VW L++R SV
Sbjct: 241 VPWREGPVWRPLERRGSVASPGEKGECGVPWTEGGVWRPLERRASV 286
Score = 433 bits (1114), Expect = e-122
Identities = 195/212 (91%), Positives = 201/212 (94%)
Query: 94 GEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGRVWRPLDRRGSVASPGEKG 153
G+KGECG+PW EG VWRPLERR SVASPGEKGECGVPWREGRVWRPL+RR SVASPG+KG
Sbjct: 178 GQKGECGVPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKG 237
Query: 154 ECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGGVWRPLERRGSVASPGEKGECGV 213
ECGVPWREG VWRPLERR SVASPG+KGECGVPW EGGVWRPLERR SVASPGEKGECGV
Sbjct: 238 ECGVPWREGPVWRPLERRGSVASPGEKGECGVPWTEGGVWRPLERRASVASPGEKGECGV 297
Query: 214 PWREGRVWRPLERRASVASPGQKGECGVPWREGAVWRPLDRRGSVASPGEKGECGVRWRE 273
PW EG VWRPLERRASVASPG+KGECGVPWREG VWRPLDRRGSVASPGEKGECGVRWRE
Sbjct: 298 PWTEGGVWRPLERRASVASPGEKGECGVPWREGGVWRPLDRRGSVASPGEKGECGVRWRE 357
Query: 274 GRVWYSLDKRGSVPAALASQRHALLALPQPQG 305
GRVWYSLDKRGSVPAALASQRHALLALPQPQG
Sbjct: 358 GRVWYSLDKRGSVPAALASQRHALLALPQPQG 389
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 79.7 bits (195), Expect = 3e-15
Identities = 66/215 (30%), Positives = 91/215 (42%), Gaps = 13/215 (6%)
Query: 68 SAKPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGEC 127
SA P P PR ++ G G GEKGE G P +G V + + +PG +GE
Sbjct: 702 SAGPPGYPGPRGVKGTSGNRGLQGEKGEKGEDGFPGFKGDVGLKGD-QGKPGAPGPRGED 760
Query: 128 GVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPW 187
G +G+ + G S GEKG+ GVP G RP + S+ PG G G
Sbjct: 761 GPEGPKGQAGQ-AGEEGPPGSAGEKGKLGVPGLPGYPGRP-GPKGSIGFPGPLGPIGEKG 818
Query: 188 REGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGA 247
+ G +P G PG +GE G P G+ P +PG GE G+P +G
Sbjct: 819 KSGKTGQP-GLEGERGPPGSRGERGQPGATGQP-GPKGDVGQDGAPGIPGEKGLPGLQGP 876
Query: 248 VWRP--------LDRRGSVASPGEKGECGVRWREG 274
P + G PG++GE G + + G
Sbjct: 877 PGFPGPKGPPGHQGKDGRPGHPGQRGELGFQGQTG 911
Score = 76.3 bits (186), Expect = 3e-14
Identities = 64/201 (31%), Positives = 84/201 (41%), Gaps = 29/201 (14%)
Query: 85 GEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGRVWRPLDRRG 144
GE G +AGEKG+ G+P G RP + S+ PG G G + G+ +P G
Sbjct: 773 GEEGPPGSAGEKGKLGVPGLPGYPGRP-GPKGSIGFPGPLGPIGEKGKSGKTGQP-GLEG 830
Query: 145 SVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGGVWRPLER-----R 199
PG +GE G P G PG KG+ G ++G P E+ +
Sbjct: 831 ERGPPGSRGERGQPGATG-------------QPGPKGDVG---QDGAPGIPGEKGLPGLQ 874
Query: 200 GSVASPGEKGECGVPWREGRVWRPLER-----RASVASPGQKGECGVPWREGAVWRPLDR 254
G PG KG G ++GR P +R + PG G G + G V PL
Sbjct: 875 GPPGFPGPKGPPGHQGKDGRPGHPGQRGELGFQGQTGPPGPAGVLGPQGKTGEVG-PLGE 933
Query: 255 RGSVASPGEKGECGVRWREGR 275
RG PG GE G+ EGR
Sbjct: 934 RGPPGPPGPPGEQGLPGLEGR 954
Score = 68.9 bits (167), Expect = 5e-12
Identities = 68/228 (29%), Positives = 89/228 (39%), Gaps = 30/228 (13%)
Query: 75 PAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLE-----------------RRAS 117
P PR L G G + G G G P +G V P E +
Sbjct: 598 PGPRGLLGPRGSPGPTGRPGVTGIDGAPGAKGNVGPPGEPGPPGQQGNHGSQGLPGPQGL 657
Query: 118 VASPGEKGECGVPWREGRVWR--PLDRRGSVASPGEKGECGVPWREG--------GVWRP 167
+ +PGEKG G P G PL G GEKG G P G GV
Sbjct: 658 IGTPGEKGPPGNPGIPGLPGSDGPLGHPGHEGPTGEKGAQGPPGSAGPPGYPGPRGVKGT 717
Query: 168 LERRASVASPGQKGECGVPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERR 227
R G+KGE G P +G V + +G +PG +GE G +G+ + E
Sbjct: 718 SGNRGLQGEKGEKGEDGFPGFKGDVGLKGD-QGKPGAPGPRGEDGPEGPKGQAGQAGE-E 775
Query: 228 ASVASPGQKGECGVPWREGAVWRPLDRRGSVASPGEKGECGVRWREGR 275
S G+KG+ GVP G RP +GS+ PG G G + + G+
Sbjct: 776 GPPGSAGEKGKLGVPGLPGYPGRP-GPKGSIGFPGPLGPIGEKGKSGK 822
Score = 63.9 bits (154), Expect = 2e-10
Identities = 68/220 (30%), Positives = 88/220 (40%), Gaps = 29/220 (13%)
Query: 72 GSVPAPRPLRSID--GEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECG- 128
GS+ P PL I G++G + G +GE G P + G+ +P + PG KG+ G
Sbjct: 803 GSIGFPGPLGPIGEKGKSGKTGQPGLEGERGPPGSRGERGQP----GATGQPGPKGDVGQ 858
Query: 129 --VPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLER-----RASVASPGQKG 181
P G P +G PG KG G ++G P +R + PG G
Sbjct: 859 DGAPGIPGEKGLP-GLQGPPGFPGPKGPPGHQGKDGRPGHPGQRGELGFQGQTGPPGPAG 917
Query: 182 ECGVPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWR--------PLERRASV--- 230
G + G V PL RG PG GE G+P EGR PL +
Sbjct: 918 VLGPQGKTGEVG-PLGERGPPGPPGPPGEQGLPGLEGREGAKGELGPPGPLGKEGPAGLR 976
Query: 231 ASPGQKGECGVPWREGAVW--RPLDRRGSVASPGEKGECG 268
PG KG G P G P G+ SPGE+G G
Sbjct: 977 GFPGPKGGPGDPGPTGLKGDKGPPGPVGANGSPGERGPLG 1016
Score = 63.2 bits (152), Expect = 3e-10
Identities = 65/201 (32%), Positives = 77/201 (38%), Gaps = 25/201 (12%)
Query: 68 SAKPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGEC 127
S +PG+ P P R G G GEKG G P +G PG G
Sbjct: 1300 SGEPGA-PGPPGKRGPSGHMGREGREGEKGAKGEPGPDG-------------PPGRTGPM 1345
Query: 128 GVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPW 187
G GRV P RG GE G G P + G P PG KG+ G P
Sbjct: 1346 GARGPPGRV-GPEGLRGIPGPVGEPGLLGAPGQMG----PPGPLGPSGLPGLKGDTG-PK 1399
Query: 188 REGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGA 247
E G + G GEKG+ G+P +G P + PG G G P G
Sbjct: 1400 GEKGHIGLIGLIGPPGEAGEKGDQGLPGVQG----PPGPKGDPGPPGPIGSLGHPGPPG- 1454
Query: 248 VWRPLDRRGSVASPGEKGECG 268
V PL ++GS SPG G G
Sbjct: 1455 VAGPLGQKGSKGSPGSMGPRG 1475
Score = 62.4 bits (150), Expect = 5e-10
Identities = 66/226 (29%), Positives = 85/226 (37%), Gaps = 30/226 (13%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVP 130
P P P G G G+KG+ G+ G + P + PGEKGE G
Sbjct: 1107 PAGHPGPPGADGAQGRRGPPGLFGQKGDDGVRGFVGVIGPP-GLQGLPGPPGEKGEVGDV 1165
Query: 131 WREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRP-----LERRASVASPGQKGECGV 185
G P RG G +G G+P GGV +P R PG G G+
Sbjct: 1166 GSMGPHGAP-GPRGPQGPTGSEGTPGLP---GGVGQPGAVGEKGERGDAGDPGPPGAPGI 1221
Query: 186 PWREG-----------GVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASV--AS 232
P +G G P ++G G KG G G + P + S S
Sbjct: 1222 PGPKGDIGEKGDSGPSGAAGPPGKKGPPGEDGAKGSVGPTGLPGDLGPPGDPGVSGIDGS 1281
Query: 233 PGQKGE---CGVPWREGAVWRPLDRRGSVASPGEKGECGVRWREGR 275
PG+KG+ G P GA P G+ PG++G G REGR
Sbjct: 1282 PGEKGDPGDVGGPGPPGASGEP----GAPGPPGKRGPSGHMGREGR 1323
Score = 60.5 bits (145), Expect = 2e-09
Identities = 62/221 (28%), Positives = 81/221 (36%), Gaps = 36/221 (16%)
Query: 74 VPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWRE 133
+P P G AG S G+KG+ G P +G S G+KG+ G P +
Sbjct: 1056 IPGPLGPLGPPGAAGPSGEEGDKGDVGAPGHKG-------------SKGDKGDAGPPGQP 1102
Query: 134 GRVWRPLDRRGSVASPGEKGECGVPWREG-----------GVWRPLERRASVASPGQKGE 182
G + P G + G +G G P G GV P + PG+KGE
Sbjct: 1103 G-IRGPAGHPGPPGADGAQGRRGPPGLFGQKGDDGVRGFVGVIGPPGLQGLPGPPGEKGE 1161
Query: 183 CG-----VPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKG 237
G P G P GS +PG G G P G R PG G
Sbjct: 1162 VGDVGSMGPHGAPGPRGPQGPTGSEGTPGLPGGVGQPGAVGE----KGERGDAGDPGPPG 1217
Query: 238 ECGVPWREGAVWRPLDR--RGSVASPGEKGECGVRWREGRV 276
G+P +G + D G+ PG+KG G +G V
Sbjct: 1218 APGIPGPKGDIGEKGDSGPSGAAGPPGKKGPPGEDGAKGSV 1258
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 77.0 bits (188), Expect = 2e-14
Identities = 70/222 (31%), Positives = 92/222 (41%), Gaps = 22/222 (9%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLER-----RASVASPGEKG 125
P P P + +DG+ G G +GE G P GQ P + + ++ PGEKG
Sbjct: 689 PPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPP---GQQGNPGAQGLPGPQGAIGPPGEKG 745
Query: 126 ECGVPWREGRVWR--PLDRRGSVASPGEKGECGVPWREGGVWRPLER--------RASVA 175
G P G P G PGEKG G P +G + P R R
Sbjct: 746 PLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADGIRGLKG 805
Query: 176 SPGQKGECGVPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQ 235
+ G+KGE G P +G + + RG + PG +GE G +GR P + PG+
Sbjct: 806 TKGEKGEDGFPGFKGDMGIKGD-RGEIGPPGPRGEDGPEGPKGR-GGPNGDPGPLGPPGE 863
Query: 236 KGECGVPWREGAVWR--PLDRRGSVASPGEKGECGVRWREGR 275
KG+ GVP G R P G PG GE G R G+
Sbjct: 864 KGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGK 905
Score = 75.1 bits (183), Expect = 7e-14
Identities = 67/219 (30%), Positives = 94/219 (42%), Gaps = 27/219 (12%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVP 130
P P PR ++ DG G GEKGE G P +G + + R + PG +GE G
Sbjct: 785 PIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGD-RGEIGPPGPRGEDGPE 843
Query: 131 WREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASP------GQKGECG 184
+GR P G + PGEKG+ GVP G R + S+ P G+KG G
Sbjct: 844 GPKGR-GGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQ-GPKGSIGFPGFPGANGEKGGRG 901
Query: 185 VPWREGGVWRPLERRGSVASPGEKGECGVPWR---------EGRVWRPLERRASVASPGQ 235
P + G P +RG GE+G G+ + +G P ER + G
Sbjct: 902 TPGKPG----PRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPN----GP 953
Query: 236 KGECGVPWREGAVWRPLDRRGSVASPGEKGECGVRWREG 274
+G G P +G P + G PG++GE G + + G
Sbjct: 954 QGPTGFPGPKGPPGPP-GKDGLPGHPGQRGETGFQGKTG 991
Score = 66.6 bits (161), Expect = 3e-11
Identities = 65/218 (29%), Positives = 86/218 (39%), Gaps = 24/218 (11%)
Query: 72 GSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPW 131
G P P+ R GE+G S AAG G G P +G P V PG+ G G P
Sbjct: 1299 GGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSP----GPVGFPGDPGPPGEPG 1354
Query: 132 REGRVWRPLDR--------RGSVASPGEKGECGVPWREG--GVWRPLERRASVASPGQKG 181
G+ P D+ GS GE G G P + G G P R+ + G+ G
Sbjct: 1355 PAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAG 1414
Query: 182 ECGVPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGV 241
G P + G P+ +G+ PG G G+P G P PG G G+
Sbjct: 1415 LEGPPGKTG----PIGPQGAPGKPGPDGLRGIPGPVGEQGLP-GSPGPDGPPGPMGPPGL 1469
Query: 242 PWREGAVWRPLDRR-----GSVASPGEKGECGVRWREG 274
P +G ++ G + PGE+GE G R G
Sbjct: 1470 PGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPG 1507
Score = 63.9 bits (154), Expect = 2e-10
Identities = 59/195 (30%), Positives = 78/195 (40%), Gaps = 34/195 (17%)
Query: 85 GEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGRVWR---PLD 141
GE GH G GE G+P G+ + G+ G G+P ++G P D
Sbjct: 1012 GERGHPGPPGPPGEQGLPGLAGKE----------GTKGDPGPAGLPGKDGPPGLRGFPGD 1061
Query: 142 RR--GSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGGVWRPLERR 199
R G V + G KG G P G P ER + G G G+P R G P
Sbjct: 1062 RGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPA----GAAGPIGIPGRPGPQGPP-GPA 1116
Query: 200 GSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWRPLDRRGSVA 259
G +PGEKG G R+G + V PG G G P +G +G +
Sbjct: 1117 GEKGAPGEKGPQGPAGRDGL-------QGPVGLPGPAGPVGPPGEDGD-------KGEIG 1162
Query: 260 SPGEKGECGVRWREG 274
PG+KG G + +G
Sbjct: 1163 EPGQKGSKGDKGEQG 1177
Score = 59.7 bits (143), Expect = 3e-09
Identities = 62/197 (31%), Positives = 80/197 (40%), Gaps = 20/197 (10%)
Query: 85 GEAGHSEAAGEKGECGIPWT---EGQVWRPLERRASVASPGEKGECGVPWREGRVWR--- 138
GE G + G+KGE G P +G + +P A PG +G+ G+ ++G
Sbjct: 1162 GEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGAD-GEPGPRGQQGLFGQKGDEGPRGF 1220
Query: 139 -----PLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGGVW 193
P+ +G PGEKGE G + G P R S +PG G G P GG+
Sbjct: 1221 PGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPS-GAPGADGPQGPP---GGIG 1276
Query: 194 RPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVW--RP 251
P G PGE GE G+P EG P R G G G P +G P
Sbjct: 1277 NP-GAVGEKGEPGEAGEPGLP-GEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGP 1334
Query: 252 LDRRGSVASPGEKGECG 268
G V PG+ G G
Sbjct: 1335 KGSPGPVGFPGDPGPPG 1351
Score = 56.2 bits (134), Expect = 3e-08
Identities = 64/226 (28%), Positives = 84/226 (37%), Gaps = 42/226 (18%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVP 130
PG P SI G G A GEKG G P G P +R GE+G G+
Sbjct: 873 PGYPGRQGPKGSI-GFPGFPGANGEKGGRGTPGKPG----PRGQRGPTGPRGERGPRGIT 927
Query: 131 WR---------EGRVWRPLDR-----RGSVASPGEKGECGVPWREGGVWRPLER-----R 171
+ +G P +R +G PG KG G P ++G P +R +
Sbjct: 928 GKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQ 987
Query: 172 ASVASPGQKGECGVPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVA 231
PG G G P G P+ RG PG GE G+P G+
Sbjct: 988 GKTGPPGPPGVVG-PQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGK----------EG 1036
Query: 232 SPGQKGECGVPWREGAVWRPLDRRGSVAS---PGEKGECGVRWREG 274
+ G G G+P ++G P RG PG G G++ EG
Sbjct: 1037 TKGDPGPAGLPGKDG----PPGLRGFPGDRGLPGPVGALGLKGNEG 1078
Score = 53.9 bits (128), Expect = 2e-07
Identities = 62/216 (28%), Positives = 79/216 (36%), Gaps = 30/216 (13%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEK------GECGIPWTEGQVWRPLERRASVASPGEK 124
P P + G G+ A GEK GE G+P EG P R G
Sbjct: 1259 PSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLP-GEGGPPGPKGERGEKGESGPS 1317
Query: 125 GECGVPWREGRVW--RPLDRRGSVASPGEKGECGVPWREGGVWRPLER-----RASVASP 177
G G P +G P G V PG+ G G P G P ++ SP
Sbjct: 1318 GAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSP 1377
Query: 178 GQKGE---CGVPWREG--GVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVAS 232
G GE G P + G G P R+G + GE G G P + G P+ + +
Sbjct: 1378 GPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTG----PIGPQGAPGK 1433
Query: 233 PGQKGECGVPWREGAVWRPLDRRGSVASPGEKGECG 268
PG G G+P P+ +G SPG G G
Sbjct: 1434 PGPDGLRGIP-------GPVGEQGLPGSPGPDGPPG 1462
Score = 45.4 bits (106), Expect = 6e-05
Identities = 58/188 (30%), Positives = 73/188 (38%), Gaps = 10/188 (5%)
Query: 83 IDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGRVWRPLDR 142
I+G G AG G G GQV P E R PG G G+P G + R
Sbjct: 467 IEGPPGPEGPAGLPGPPGTMGPTGQVGDPGE-RGPPGRPGLPGADGLPGPPGTMLMLPFR 525
Query: 143 RGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGGVWRPLE--RRG 200
G G KG V +E + + ++A +A G G G+ R G V P +G
Sbjct: 526 FGGGGDAGSKGPM-VSAQESQA-QAILQQARLALRGPAGPMGLTGRPGPVGPPGSGGLKG 583
Query: 201 SVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWRPLDRRGSVAS 260
G +G GV G +P RR S G +G G +G R D G
Sbjct: 584 EPGDVGPQGPRGVQGPPGPAGKP-GRRGRAGSDGARGMPGQTGPKGD--RGFD--GLAGL 638
Query: 261 PGEKGECG 268
PGEKG G
Sbjct: 639 PGEKGHRG 646
Score = 44.3 bits (103), Expect = 1e-04
Identities = 49/164 (29%), Positives = 62/164 (37%), Gaps = 38/164 (23%)
Query: 68 SAKPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGEC 127
S P P P + G G S GEKG G+ G + P E+ GEKG+
Sbjct: 1454 SPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGL---IGLIGPPGEQ-------GEKGDR 1503
Query: 128 GVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPW 187
G+P +G S G KGE G+ G + PG G G P
Sbjct: 1504 GLPGPQG-------------SSGPKGEQGITGPSG----------PIGPPGPPGLPGPPG 1540
Query: 188 REG--GVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRAS 229
+G G P +G PG G G P G V +PL +AS
Sbjct: 1541 PKGAKGSSGPTGPKGEAGHPGPPGPPGPP---GEVIQPLPIQAS 1581
Score = 42.4 bits (98), Expect = 5e-04
Identities = 61/242 (25%), Positives = 78/242 (32%), Gaps = 50/242 (20%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRP------------------- 111
P +P P G+ G G G G+P +G P
Sbjct: 476 PAGLPGPPGTMGPTGQVGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGSK 535
Query: 112 -------------LERRASVASPGEKGECGVPWREGRVWRPLDRRGSVASPGEKGECGVP 158
+ ++A +A G G G+ R G V P GS GE G+ G P
Sbjct: 536 GPMVSAQESQAQAILQQARLALRGPAGPMGLTGRPGPVGPP----GSGGLKGEPGDVG-P 590
Query: 159 WREGGVWRPLERRASVASPGQKGECGVPWREG--GVWRPLERR---GSVASPGEKGECGV 213
GV P PG++G G G G P R G PGEKG G
Sbjct: 591 QGPRGVQGP---PGPAGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGD 647
Query: 214 PWREGRVWRPLERRASVASPGQKGECGVPWREGAVWRPLDRRGSVASPGEKGECGVRWRE 273
P G P + G+ G G+P G P G PG G GV +
Sbjct: 648 PGPSGPPGPPGD-DGERGDDGEVGPRGLPGEPG----PRGLLGPKGPPGPPGPPGVTGMD 702
Query: 274 GR 275
G+
Sbjct: 703 GQ 704
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 75.9 bits (185), Expect = 4e-14
Identities = 70/209 (33%), Positives = 89/209 (42%), Gaps = 24/209 (11%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRP----LERRASVASP-GEKG 125
PGS P P + GE G ++G KG G P G+ P L V P G+ G
Sbjct: 530 PGSDGLPGP-KGAQGERGPVGSSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLG 588
Query: 126 ECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGV 185
G P +GR P GS+ G+ G G+P +G P PG+ G GV
Sbjct: 589 PLGAPGEDGRPGPP----GSIGIRGQPGSMGLPGPKGSSGDP-------GKPGEAGNAGV 637
Query: 186 PWREGGVWRPLE--RRGSVASPG---EKGECGVPWREGRVWRPLERRASVASPGQKGECG 240
P + G + E G V PG E+GE G P G P G+ G+ G
Sbjct: 638 PGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPPGPTGFQGLP-GPPGPPGEGGKPGDQG 696
Query: 241 VPWREGAVWRPLDRRGSVASPGEKGECGV 269
VP GAV PL RG +PGE+GE G+
Sbjct: 697 VPGDPGAVG-PLGPRGERGNPGERGEPGI 724
Score = 68.2 bits (165), Expect = 9e-12
Identities = 62/213 (29%), Positives = 86/213 (40%), Gaps = 32/213 (15%)
Query: 68 SAKPGS--VPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKG 125
+ PG+ P L + G GH G KGE G P ++G+ + + G G
Sbjct: 281 AGSPGARGFPGAPGLPGLKGHRGHKGLEGPKGEVGAPGSKGEA----GPTGPMGAMGPLG 336
Query: 126 ECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRAS---VASPGQKGE 182
G+P GR+ G +PG++G G+P + G + PL S +PG KGE
Sbjct: 337 PRGMPGERGRL-------GPQGAPGQRGAHGMPGKPGPM-GPLGIPGSSGFPGNPGMKGE 388
Query: 183 CGVPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVP 242
G P G P +RG PG G G+P G + +PG KG G P
Sbjct: 389 AG-PTGARGPEGPQGQRGETGPPGPVGSPGLPGAIG----------TDGTPGAKGPTGSP 437
Query: 243 WREGAVWRPLDRRGSVASPGEKGECGVRWREGR 275
G P G SPG +G G + G+
Sbjct: 438 GTSG----PPGSAGPPGSPGPQGSTGPQGIRGQ 466
Score = 67.4 bits (163), Expect = 2e-11
Identities = 74/258 (28%), Positives = 91/258 (35%), Gaps = 43/258 (16%)
Query: 75 PAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREG 134
P P + G G G G G P + G+V P +PG G G P +EG
Sbjct: 884 PGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPP----GPAGAPGPAGPLGEPGKEG 939
Query: 135 RVWRPLD--------RRGSVASPGEKGECGVPWREG--------GVWRPLERRASVASPG 178
D RG PG G+ G P +G G +R V PG
Sbjct: 940 PPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPG 999
Query: 179 QKGECGVPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGE 238
Q+GE G+P G P G V G G+ G P G P V PG +G
Sbjct: 1000 QRGERGMPGLPGPAGTP----GKVGPTGATGDKGPPGPVG----PPGSNGPVGEPGPEGP 1051
Query: 239 C---GVPWREGAVWRPLDR--------RGSVASPGEKGECGVRWREGRVWYSLDKRGSVP 287
G P R+GAV DR GS +PG G G G+ + P
Sbjct: 1052 AGNDGTPGRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIGP 1111
Query: 288 AALASQRHALLALPQPQG 305
A +R LP PQG
Sbjct: 1112 PGRAGKR----GLPGPQG 1125
Score = 63.9 bits (154), Expect = 2e-10
Identities = 60/196 (30%), Positives = 77/196 (39%), Gaps = 27/196 (13%)
Query: 85 GEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGRVWRP--LDR 142
G G G+ G G+P +G P PGE G GVP + G + +
Sbjct: 600 GPPGSIGIRGQPGSMGLPGPKGSSGDP-------GKPGEAGNAGVPGQRGAPGKDGEVGP 652
Query: 143 RGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREG-----GVWRPLE 197
G V PG GE G E G P + PG GE G P +G G PL
Sbjct: 653 SGPVGPPGLAGERG----EQGPPGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLG 708
Query: 198 RRGSVASPGEKGE---CGVPWREGRV--WRPLERRASVASPGQKGECGVPWREGAVWRPL 252
RG +PGE+GE G+P +G P + S G G+ G P +G
Sbjct: 709 PRGERGNPGERGEPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQGMP---- 764
Query: 253 DRRGSVASPGEKGECG 268
RG +PG KG+ G
Sbjct: 765 GERGIAGTPGPKGDRG 780
Score = 60.8 bits (146), Expect = 1e-09
Identities = 67/219 (30%), Positives = 77/219 (35%), Gaps = 31/219 (14%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVP 130
PG V +P + G G G KG G P T G P SPG +G G
Sbjct: 410 PGPVGSP----GLPGAIGTDGTPGAKGPTGSPGTSG----PPGSAGPPGSPGPQGSTGPQ 461
Query: 131 WREGRVWRP--LDRRGSVASPGEKGECGV-----PWREGGVWRPLERRASVASPGQKGEC 183
G+ P +G GE G G+ P E G P +V PG GE
Sbjct: 462 GIRGQPGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGER 521
Query: 184 GVPWREG--------GVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQ 235
G P G G RG V S G KG G P R G P R G
Sbjct: 522 GAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQGDPGRPGEPGLPGAR-------GL 574
Query: 236 KGECGVPWREGAVWRPLDRRGSVASPGEKGECGVRWREG 274
G GV EG + PL G PG G G+R + G
Sbjct: 575 TGNPGVQGPEGKLG-PLGAPGEDGRPGPPGSIGIRGQPG 612
Score = 58.5 bits (140), Expect = 7e-09
Identities = 75/229 (32%), Positives = 89/229 (38%), Gaps = 34/229 (14%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRP----------LER--RASV 118
PGS PR R G G G GE G+P G P L R A +
Sbjct: 137 PGS-QGPRGERGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPGHPSHPGPDGLSRPFSAQM 195
Query: 119 ASPGEKGECG-----VPWREGRVWRPLDRRGSVASPGEKGECGVPWREG--GVWRPLERR 171
A EK G +P G V P +G G G G P G G P+ R
Sbjct: 196 AGLDEKSGLGSQVGLMPGSVGPV-GPRGPQGLQGQQGGAGPTGPPGEPGDPGPMGPIGSR 254
Query: 172 ASVASPGQKGECGVPWREGGVWRPLERRGSVASPGEKGECGVPWREG----RVWRPLE-R 226
PG+ GE G P R G P E G SPG +G G P G R + LE
Sbjct: 255 GPEGPPGKPGEDGEPGRNG---NPGE-VGFAGSPGARGFPGAPGLPGLKGHRGHKGLEGP 310
Query: 227 RASVASPGQKGECGVPWREGAVWRPLDRRGSVASPGEKGECGVRWREGR 275
+ V +PG KGE G GA+ PL RG PGE+G G + G+
Sbjct: 311 KGEVGAPGSKGEAGPTGPMGAM-GPLGPRG---MPGERGRLGPQGAPGQ 355
Score = 57.8 bits (138), Expect = 1e-08
Identities = 64/216 (29%), Positives = 81/216 (37%), Gaps = 25/216 (11%)
Query: 70 KPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGV 129
+PG VP +R G AG + G +GE G G P + PG G+ G
Sbjct: 117 EPGLVPVVTGIRGRPGPAGPPGSQGPRGERGPKGRPG----PRGPQGIDGEPGVPGQPGA 172
Query: 130 PWREGRVWRP----LDRRGSVASPGEKGECGVPWREG---GVWRPLERRASVASPGQKGE 182
P G P L R S G + G+ + G G P+ R GQ+G
Sbjct: 173 PGPPGHPSHPGPDGLSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGG 232
Query: 183 CGVPWREG-----GVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKG 237
G G G P+ RG PG+ GE G P R G P E SPG +G
Sbjct: 233 AGPTGPPGEPGDPGPMGPIGSRGPEGPPGKPGEDGEPGRNG---NPGE-VGFAGSPGARG 288
Query: 238 ECGVPWREGAVWRPLDR-----RGSVASPGEKGECG 268
G P G + +G V +PG KGE G
Sbjct: 289 FPGAPGLPGLKGHRGHKGLEGPKGEVGAPGSKGEAG 324
Score = 53.9 bits (128), Expect = 2e-07
Identities = 59/212 (27%), Positives = 74/212 (34%), Gaps = 43/212 (20%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVP 130
P P P G G GE+G G P +G R + G +G G
Sbjct: 742 PKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGD-------RGGIGEKGAEGTAGND 794
Query: 131 WREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGV----- 185
G + PL G GEKGE G G+ P R + S G+ G G
Sbjct: 795 GARG-LPGPLGPPGPAGPTGEKGEPG----PRGLVGPPGSRGNPGSRGENGPTGAVGFAG 849
Query: 186 ---PWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVP 242
P + GV +G PG+KG+ G P +G SPG G GVP
Sbjct: 850 PQGPDGQPGV------KGEPGEPGQKGDAGSPGPQG----------LAGSPGPHGPNGVP 893
Query: 243 WREGAVWRPLDRRGSVASPGEKGECGVRWREG 274
+G RG+ PG G G R G
Sbjct: 894 GLKGG-------RGTQGPPGATGFPGSAGRVG 918
Score = 35.4 bits (80), Expect = 0.063
Identities = 33/117 (28%), Positives = 43/117 (36%), Gaps = 15/117 (12%)
Query: 74 VPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWRE 133
+P P+ R G+ G G+KG G +G P GE+G G+P
Sbjct: 1120 LPGPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPP-------GPNGEQGSAGIP--- 1169
Query: 134 GRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREG 190
P RG G G+ G P G + P R SV G +G G P G
Sbjct: 1170 ----GPFGPRGPPGPVGPSGKEGNPGPLGPIGPP-GVRGSVGEAGPEGPPGEPGPPG 1221
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 75.9 bits (185), Expect = 4e-14
Identities = 68/214 (31%), Positives = 88/214 (41%), Gaps = 17/214 (7%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVP 130
P P PR ++ +DG G GEKGE G P +G + + R V PG +GE G
Sbjct: 627 PLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGD-RGEVGVPGSRGEDGPE 685
Query: 131 WREGRVWRPLDRRGSVASPGEKGECGVPWREG--GVWRPLERRASVASPGQKGECGV--- 185
+GR P G GEKG+ GVP G G P PG GE G
Sbjct: 686 GPKGRT-GPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGL 744
Query: 186 -----PWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECG 240
P E G P +RG + G+ G G +G P ER PG +G G
Sbjct: 745 SGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGER----GLPGPQGPNG 800
Query: 241 VPWREGAVWRPLDRRGSVASPGEKGECGVRWREG 274
P +G P + G PG++GE G + + G
Sbjct: 801 FPGPKGPPGPP-GKDGLPGHPGQRGEVGFQGKTG 833
Score = 69.3 bits (168), Expect = 4e-12
Identities = 68/222 (30%), Positives = 88/222 (39%), Gaps = 22/222 (9%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLER-----RASVASPGEKG 125
P +P P +R +DG G + G +GE G P GQ P + + ++ GEKG
Sbjct: 531 PPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPP---GQQGTPGTQGLPGPQGAIGPHGEKG 587
Query: 126 ECGVPWREGRVWR--PLDRRGSVASPGEKGECGVPWREGGVWRPLER--------RASVA 175
G P G P G PG KG G +G + P R R
Sbjct: 588 PQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKG 647
Query: 176 SPGQKGECGVPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQ 235
G+KGE G P +G + + RG V PG +GE G +GR P G+
Sbjct: 648 HKGEKGEDGFPGFKGDIGVKGD-RGEVGVPGSRGEDGPEGPKGRT-GPTGDPGPPGLMGE 705
Query: 236 KGECGVPWREGAVWR--PLDRRGSVASPGEKGECGVRWREGR 275
KG+ GVP G R P G PG GE G R G+
Sbjct: 706 KGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGK 747
Score = 68.9 bits (167), Expect = 5e-12
Identities = 63/224 (28%), Positives = 84/224 (37%), Gaps = 48/224 (21%)
Query: 70 KPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGV 129
+PG +P P GE G G++G G P +EG R+ + G+ G G
Sbjct: 1212 EPGQPGSPGPT----GENGPPGPLGKRGPAGSPGSEG-------RQGGKGAKGDPGAIGA 1260
Query: 130 PWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWRE 189
P + G P+ G PG G G+P G RP PG G G+P
Sbjct: 1261 PGKTG----PVGPAGPAGKPGPDGLRGLPGSVGQQGRP-GATGQAGPPGPVGPPGLPGLR 1315
Query: 190 GGVWRPLERR--------GSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGV 241
G E+ G GEKG+ G+P +G SPGQKGE G+
Sbjct: 1316 GDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQG-------------SPGQKGEMGI 1362
Query: 242 PWREGAVW-----------RPLDRRGSVASPGEKGECGVRWREG 274
P G + P +G+ G KGE GV+ G
Sbjct: 1363 PGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPG 1406
Score = 67.0 bits (162), Expect = 2e-11
Identities = 60/193 (31%), Positives = 76/193 (39%), Gaps = 30/193 (15%)
Query: 85 GEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGRVWRPLDRRG 144
GE GH G GE G+P T G+ + G+ G G P ++G P RG
Sbjct: 854 GERGHPGPPGPPGEQGLPGTAGK----------EGTKGDPGPPGAPGKDG----PAGLRG 899
Query: 145 SVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGGVWRPLERRGSVAS 204
G G G P +G P SPG++G G GG P R G
Sbjct: 900 FPGERGLPGTAGGPGLKGNE-GPSGPPGPAGSPGERGAAG----SGGPIGPPGRPGPQGP 954
Query: 205 PGEKGECGVPWREGRVWRPLER---RASVASPGQKGECGVPWREGAVWRPLDRRGSVASP 261
PG GE GVP +G + P R + V PG G GV +G +G V P
Sbjct: 955 PGAAGEKGVPGEKGPI-GPTGRDGVQGPVGLPGPAGPPGVAGEDG-------DKGEVGDP 1006
Query: 262 GEKGECGVRWREG 274
G+KG G + G
Sbjct: 1007 GQKGTKGNKGEHG 1019
Score = 62.8 bits (151), Expect = 4e-10
Identities = 69/240 (28%), Positives = 89/240 (37%), Gaps = 37/240 (15%)
Query: 67 LSAKPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGE 126
+ +PG V PR R GE+G G G G +G P V PG+ G
Sbjct: 1137 IQGEPG-VKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNP----GPVGFPGDPGP 1191
Query: 127 CGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVP 186
G G+ DR G PG+ G G P E G PL +R SPG +G G
Sbjct: 1192 PGEGGPRGQDGAKGDR-GEDGEPGQPGSPG-PTGENGPPGPLGKRGPAGSPGSEGRQGGK 1249
Query: 187 WREG--------GVWRPLERRGSVASPGEKGECGVPWREGRVWRP-LERRASVASP---- 233
+G G P+ G PG G G+P G+ RP +A P
Sbjct: 1250 GAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPP 1309
Query: 234 ---------GQKGECGVPWREGAVWRPLDRR--------GSVASPGEKGECGVRWREGRV 276
G KGE G P G + P ++ G SPG+KGE G+ G +
Sbjct: 1310 GLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPI 1369
Score = 59.7 bits (143), Expect = 3e-09
Identities = 63/201 (31%), Positives = 79/201 (39%), Gaps = 15/201 (7%)
Query: 81 RSIDGEAGHSEAAGEKGECGIPWTEG--QVWRPLERRASVASPGEKGECGVPWREGRVWR 138
R + GE+G G KG GIP G + P + S+ GE G G G
Sbjct: 514 RGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGL 573
Query: 139 PLDRRGSVASPGEKGECGVPWREG--GVWRPLERRASVASPGQKGECGVPWREGGVWRPL 196
P +G++ GEKG G P G G P PG KG G +G + P
Sbjct: 574 P-GPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPG 632
Query: 197 ER--------RGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAV 248
R RG GEKGE G P +G + + R V PG +GE G +G
Sbjct: 633 PRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGD-RGEVGVPGSRGEDGPEGPKGRT 691
Query: 249 WRPLDRRGSVASPGEKGECGV 269
P G GEKG+ GV
Sbjct: 692 -GPTGDPGPPGLMGEKGKLGV 711
Score = 56.2 bits (134), Expect = 3e-08
Identities = 73/270 (27%), Positives = 97/270 (35%), Gaps = 38/270 (14%)
Query: 23 GALTIVSSHGGDSDKDLCARTQIYGAQPREDQMGSVEKLTTSAFLSAKPGSVPAPRPLRS 82
G + + S G D + RT G MG KL PG P S
Sbjct: 671 GEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGL----PGYPGRQGPKGS 726
Query: 83 IDGEAGHSEAAGEKGECGI-----PWTEGQVWRPLERRASVASPGEKGECGVPWREGRVW 137
+ G G A+GEKG G+ P E P +R + G+ G G +G
Sbjct: 727 L-GFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHG 785
Query: 138 RPLDR-----RGSVASPGEKGECGVPWREGGVWRPLER-----RASVASPGQKGECGVPW 187
P +R +G PG KG G P ++G P +R + PG G G P
Sbjct: 786 PPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVG-PQ 844
Query: 188 REGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGA 247
G P+ RG PG GE G+P G+ + G G G P ++G
Sbjct: 845 GAAGETGPMGERGHPGPPGPPGEQGLPGTAGK----------EGTKGDPGPPGAPGKDG- 893
Query: 248 VWRPLDRRGSVAS---PGEKGECGVRWREG 274
P RG PG G G++ EG
Sbjct: 894 ---PAGLRGFPGERGLPGTAGGPGLKGNEG 920
Score = 53.1 bits (126), Expect = 3e-07
Identities = 60/220 (27%), Positives = 79/220 (35%), Gaps = 42/220 (19%)
Query: 85 GEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGRVWRPLDRRG 144
G GH A G++G G G P+ + GEKGE G G P RG
Sbjct: 1046 GPQGHFGAKGDEGTRGFNGPPG----PIGLQGLPGPSGEKGETGDVGPMGPPGPP-GPRG 1100
Query: 145 SVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREG--GVWRPLERRGSV 202
G G G P G + P E+ G+ GE G P +G GV P RG
Sbjct: 1101 PAGPNGADGPQGPPGGVGNLGPPGEK-------GEPGESGSPGIQGEPGVKGPRGERGEK 1153
Query: 203 ASPGEKGECGVPWREGRVWRPLER--------------------RASVASPGQKGECGVP 242
G+ GE G P +G + R + G +GE G P
Sbjct: 1154 GESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEP 1213
Query: 243 WREGAVW--------RPLDRRGSVASPGEKGECGVRWREG 274
+ G+ PL +RG SPG +G G + +G
Sbjct: 1214 GQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKG 1253
Score = 48.9 bits (115), Expect = 6e-06
Identities = 56/192 (29%), Positives = 71/192 (36%), Gaps = 18/192 (9%)
Query: 85 GEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGRVWRPLDRRG 144
GE G GE G G+P G P PG G GV +G P +G
Sbjct: 500 GEDGERGDDGEIGPRGLPGESG----PRGLLGPKGPPGIPGPPGVRGMDG----PQGPKG 551
Query: 145 SVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGGVWRPLERRGSVAS 204
S+ GE G G G P + A + G+KG G P G GS
Sbjct: 552 SLGPQGEPGPPGQQGTPGTQGLPGPQGA-IGPHGEKGPQGKPGLPG-------MPGSDGP 603
Query: 205 PGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWRPLDRRGSVASPGEK 264
PG G+ G P +G P + + PG +G GV G +G PG K
Sbjct: 604 PGHPGKEGPPGTKGNQG-PSGPQGPLGYPGPRGVKGVDGIRGLKGHK-GEKGEDGFPGFK 661
Query: 265 GECGVRWREGRV 276
G+ GV+ G V
Sbjct: 662 GDIGVKGDRGEV 673
Score = 47.0 bits (110), Expect = 2e-05
Identities = 59/210 (28%), Positives = 74/210 (35%), Gaps = 13/210 (6%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVP 130
P P+ L G+AG AG G G+P G V PGEKG G
Sbjct: 432 PQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPG-VKGDRGFDGLPGLPGEKGHRGDT 490
Query: 131 WREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREG 190
+G + P G GE G G+P G P PG G GV +G
Sbjct: 491 GAQG-LPGPPGEDGERGDDGEIGPRGLPGESG----PRGLLGPKGPPGIPGPPGVRGMDG 545
Query: 191 GVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWR 250
P +GS+ GE G G G P + ++ G+KG G P G
Sbjct: 546 ----PQGPKGSLGPQGEPGPPGQQGTPGTQGLP-GPQGAIGPHGEKGPQGKPGLPGMPGS 600
Query: 251 --PLDRRGSVASPGEKGECGVRWREGRVWY 278
P G PG KG G +G + Y
Sbjct: 601 DGPPGHPGKEGPPGTKGNQGPSGPQGPLGY 630
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 75.9 bits (185), Expect = 4e-14
Identities = 68/214 (31%), Positives = 88/214 (41%), Gaps = 17/214 (7%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVP 130
P P PR ++ +DG G GEKGE G P +G + + R V PG +GE G
Sbjct: 606 PLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGD-RGEVGVPGSRGEDGPE 664
Query: 131 WREGRVWRPLDRRGSVASPGEKGECGVPWREG--GVWRPLERRASVASPGQKGECGV--- 185
+GR P G GEKG+ GVP G G P PG GE G
Sbjct: 665 GPKGRT-GPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGL 723
Query: 186 -----PWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECG 240
P E G P +RG + G+ G G +G P ER PG +G G
Sbjct: 724 SGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGER----GLPGPQGPNG 779
Query: 241 VPWREGAVWRPLDRRGSVASPGEKGECGVRWREG 274
P +G P + G PG++GE G + + G
Sbjct: 780 FPGPKGPPGPP-GKDGLPGHPGQRGEVGFQGKTG 812
Score = 69.3 bits (168), Expect = 4e-12
Identities = 68/222 (30%), Positives = 88/222 (39%), Gaps = 22/222 (9%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLER-----RASVASPGEKG 125
P +P P +R +DG G + G +GE G P GQ P + + ++ GEKG
Sbjct: 510 PPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPP---GQQGTPGTQGLPGPQGAIGPHGEKG 566
Query: 126 ECGVPWREGRVWR--PLDRRGSVASPGEKGECGVPWREGGVWRPLER--------RASVA 175
G P G P G PG KG G +G + P R R
Sbjct: 567 PQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKG 626
Query: 176 SPGQKGECGVPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQ 235
G+KGE G P +G + + RG V PG +GE G +GR P G+
Sbjct: 627 HKGEKGEDGFPGFKGDIGVKGD-RGEVGVPGSRGEDGPEGPKGRT-GPTGDPGPPGLMGE 684
Query: 236 KGECGVPWREGAVWR--PLDRRGSVASPGEKGECGVRWREGR 275
KG+ GVP G R P G PG GE G R G+
Sbjct: 685 KGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGK 726
Score = 68.9 bits (167), Expect = 5e-12
Identities = 63/224 (28%), Positives = 84/224 (37%), Gaps = 48/224 (21%)
Query: 70 KPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGV 129
+PG +P P GE G G++G G P +EG R+ + G+ G G
Sbjct: 1191 EPGQPGSPGPT----GENGPPGPLGKRGPAGSPGSEG-------RQGGKGAKGDPGAIGA 1239
Query: 130 PWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWRE 189
P + G P+ G PG G G+P G RP PG G G+P
Sbjct: 1240 PGKTG----PVGPAGPAGKPGPDGLRGLPGSVGQQGRP-GATGQAGPPGPVGPPGLPGLR 1294
Query: 190 GGVWRPLERR--------GSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGV 241
G E+ G GEKG+ G+P +G SPGQKGE G+
Sbjct: 1295 GDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQG-------------SPGQKGEMGI 1341
Query: 242 PWREGAVW-----------RPLDRRGSVASPGEKGECGVRWREG 274
P G + P +G+ G KGE GV+ G
Sbjct: 1342 PGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPG 1385
Score = 67.0 bits (162), Expect = 2e-11
Identities = 60/193 (31%), Positives = 76/193 (39%), Gaps = 30/193 (15%)
Query: 85 GEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGRVWRPLDRRG 144
GE GH G GE G+P T G+ + G+ G G P ++G P RG
Sbjct: 833 GERGHPGPPGPPGEQGLPGTAGK----------EGTKGDPGPPGAPGKDG----PAGLRG 878
Query: 145 SVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGGVWRPLERRGSVAS 204
G G G P +G P SPG++G G GG P R G
Sbjct: 879 FPGERGLPGTAGGPGLKGNE-GPSGPPGPAGSPGERGAAG----SGGPIGPPGRPGPQGP 933
Query: 205 PGEKGECGVPWREGRVWRPLER---RASVASPGQKGECGVPWREGAVWRPLDRRGSVASP 261
PG GE GVP +G + P R + V PG G GV +G +G V P
Sbjct: 934 PGAAGEKGVPGEKGPI-GPTGRDGVQGPVGLPGPAGPPGVAGEDG-------DKGEVGDP 985
Query: 262 GEKGECGVRWREG 274
G+KG G + G
Sbjct: 986 GQKGTKGNKGEHG 998
Score = 62.8 bits (151), Expect = 4e-10
Identities = 69/240 (28%), Positives = 89/240 (37%), Gaps = 37/240 (15%)
Query: 67 LSAKPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGE 126
+ +PG V PR R GE+G G G G +G P V PG+ G
Sbjct: 1116 IQGEPG-VKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNP----GPVGFPGDPGP 1170
Query: 127 CGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVP 186
G G+ DR G PG+ G G P E G PL +R SPG +G G
Sbjct: 1171 PGEGGPRGQDGAKGDR-GEDGEPGQPGSPG-PTGENGPPGPLGKRGPAGSPGSEGRQGGK 1228
Query: 187 WREG--------GVWRPLERRGSVASPGEKGECGVPWREGRVWRP-LERRASVASP---- 233
+G G P+ G PG G G+P G+ RP +A P
Sbjct: 1229 GAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPP 1288
Query: 234 ---------GQKGECGVPWREGAVWRPLDRR--------GSVASPGEKGECGVRWREGRV 276
G KGE G P G + P ++ G SPG+KGE G+ G +
Sbjct: 1289 GLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPI 1348
Score = 59.7 bits (143), Expect = 3e-09
Identities = 63/201 (31%), Positives = 79/201 (39%), Gaps = 15/201 (7%)
Query: 81 RSIDGEAGHSEAAGEKGECGIPWTEG--QVWRPLERRASVASPGEKGECGVPWREGRVWR 138
R + GE+G G KG GIP G + P + S+ GE G G G
Sbjct: 493 RGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGL 552
Query: 139 PLDRRGSVASPGEKGECGVPWREG--GVWRPLERRASVASPGQKGECGVPWREGGVWRPL 196
P +G++ GEKG G P G G P PG KG G +G + P
Sbjct: 553 P-GPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPG 611
Query: 197 ER--------RGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAV 248
R RG GEKGE G P +G + + R V PG +GE G +G
Sbjct: 612 PRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGD-RGEVGVPGSRGEDGPEGPKGRT 670
Query: 249 WRPLDRRGSVASPGEKGECGV 269
P G GEKG+ GV
Sbjct: 671 -GPTGDPGPPGLMGEKGKLGV 690
Score = 56.2 bits (134), Expect = 3e-08
Identities = 73/270 (27%), Positives = 97/270 (35%), Gaps = 38/270 (14%)
Query: 23 GALTIVSSHGGDSDKDLCARTQIYGAQPREDQMGSVEKLTTSAFLSAKPGSVPAPRPLRS 82
G + + S G D + RT G MG KL PG P S
Sbjct: 650 GEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGL----PGYPGRQGPKGS 705
Query: 83 IDGEAGHSEAAGEKGECGI-----PWTEGQVWRPLERRASVASPGEKGECGVPWREGRVW 137
+ G G A+GEKG G+ P E P +R + G+ G G +G
Sbjct: 706 L-GFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHG 764
Query: 138 RPLDR-----RGSVASPGEKGECGVPWREGGVWRPLER-----RASVASPGQKGECGVPW 187
P +R +G PG KG G P ++G P +R + PG G G P
Sbjct: 765 PPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVG-PQ 823
Query: 188 REGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGA 247
G P+ RG PG GE G+P G+ + G G G P ++G
Sbjct: 824 GAAGETGPMGERGHPGPPGPPGEQGLPGTAGK----------EGTKGDPGPPGAPGKDG- 872
Query: 248 VWRPLDRRGSVAS---PGEKGECGVRWREG 274
P RG PG G G++ EG
Sbjct: 873 ---PAGLRGFPGERGLPGTAGGPGLKGNEG 899
Score = 53.1 bits (126), Expect = 3e-07
Identities = 60/220 (27%), Positives = 79/220 (35%), Gaps = 42/220 (19%)
Query: 85 GEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGRVWRPLDRRG 144
G GH A G++G G G P+ + GEKGE G G P RG
Sbjct: 1025 GPQGHFGAKGDEGTRGFNGPPG----PIGLQGLPGPSGEKGETGDVGPMGPPGPP-GPRG 1079
Query: 145 SVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREG--GVWRPLERRGSV 202
G G G P G + P E+ G+ GE G P +G GV P RG
Sbjct: 1080 PAGPNGADGPQGPPGGVGNLGPPGEK-------GEPGESGSPGIQGEPGVKGPRGERGEK 1132
Query: 203 ASPGEKGECGVPWREGRVWRPLER--------------------RASVASPGQKGECGVP 242
G+ GE G P +G + R + G +GE G P
Sbjct: 1133 GESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEP 1192
Query: 243 WREGAVW--------RPLDRRGSVASPGEKGECGVRWREG 274
+ G+ PL +RG SPG +G G + +G
Sbjct: 1193 GQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKG 1232
Score = 48.9 bits (115), Expect = 6e-06
Identities = 56/192 (29%), Positives = 71/192 (36%), Gaps = 18/192 (9%)
Query: 85 GEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGRVWRPLDRRG 144
GE G GE G G+P G P PG G GV +G P +G
Sbjct: 479 GEDGERGDDGEIGPRGLPGESG----PRGLLGPKGPPGIPGPPGVRGMDG----PQGPKG 530
Query: 145 SVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGGVWRPLERRGSVAS 204
S+ GE G G G P + A + G+KG G P G GS
Sbjct: 531 SLGPQGEPGPPGQQGTPGTQGLPGPQGA-IGPHGEKGPQGKPGLPG-------MPGSDGP 582
Query: 205 PGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWRPLDRRGSVASPGEK 264
PG G+ G P +G P + + PG +G GV G +G PG K
Sbjct: 583 PGHPGKEGPPGTKGNQG-PSGPQGPLGYPGPRGVKGVDGIRGLKGHK-GEKGEDGFPGFK 640
Query: 265 GECGVRWREGRV 276
G+ GV+ G V
Sbjct: 641 GDIGVKGDRGEV 652
Score = 47.0 bits (110), Expect = 2e-05
Identities = 59/210 (28%), Positives = 74/210 (35%), Gaps = 13/210 (6%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVP 130
P P+ L G+AG AG G G+P G V PGEKG G
Sbjct: 411 PQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPG-VKGDRGFDGLPGLPGEKGHRGDT 469
Query: 131 WREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREG 190
+G + P G GE G G+P G P PG G GV +G
Sbjct: 470 GAQG-LPGPPGEDGERGDDGEIGPRGLPGESG----PRGLLGPKGPPGIPGPPGVRGMDG 524
Query: 191 GVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWR 250
P +GS+ GE G G G P + ++ G+KG G P G
Sbjct: 525 ----PQGPKGSLGPQGEPGPPGQQGTPGTQGLP-GPQGAIGPHGEKGPQGKPGLPGMPGS 579
Query: 251 --PLDRRGSVASPGEKGECGVRWREGRVWY 278
P G PG KG G +G + Y
Sbjct: 580 DGPPGHPGKEGPPGTKGNQGPSGPQGPLGY 609
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
[Homo sapiens]
Length = 1736
Score = 75.9 bits (185), Expect = 4e-14
Identities = 68/214 (31%), Positives = 88/214 (41%), Gaps = 17/214 (7%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVP 130
P P PR ++ +DG G GEKGE G P +G + + R V PG +GE G
Sbjct: 713 PLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGD-RGEVGVPGSRGEDGPE 771
Query: 131 WREGRVWRPLDRRGSVASPGEKGECGVPWREG--GVWRPLERRASVASPGQKGECGV--- 185
+GR P G GEKG+ GVP G G P PG GE G
Sbjct: 772 GPKGRT-GPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGL 830
Query: 186 -----PWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECG 240
P E G P +RG + G+ G G +G P ER PG +G G
Sbjct: 831 SGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGER----GLPGPQGPNG 886
Query: 241 VPWREGAVWRPLDRRGSVASPGEKGECGVRWREG 274
P +G P + G PG++GE G + + G
Sbjct: 887 FPGPKGPPGPP-GKDGLPGHPGQRGEVGFQGKTG 919
Score = 69.3 bits (168), Expect = 4e-12
Identities = 68/222 (30%), Positives = 88/222 (39%), Gaps = 22/222 (9%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLER-----RASVASPGEKG 125
P +P P +R +DG G + G +GE G P GQ P + + ++ GEKG
Sbjct: 617 PPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPP---GQQGTPGTQGLPGPQGAIGPHGEKG 673
Query: 126 ECGVPWREGRVWR--PLDRRGSVASPGEKGECGVPWREGGVWRPLER--------RASVA 175
G P G P G PG KG G +G + P R R
Sbjct: 674 PQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKG 733
Query: 176 SPGQKGECGVPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQ 235
G+KGE G P +G + + RG V PG +GE G +GR P G+
Sbjct: 734 HKGEKGEDGFPGFKGDIGVKGD-RGEVGVPGSRGEDGPEGPKGRT-GPTGDPGPPGLMGE 791
Query: 236 KGECGVPWREGAVWR--PLDRRGSVASPGEKGECGVRWREGR 275
KG+ GVP G R P G PG GE G R G+
Sbjct: 792 KGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGK 833
Score = 68.9 bits (167), Expect = 5e-12
Identities = 63/224 (28%), Positives = 84/224 (37%), Gaps = 48/224 (21%)
Query: 70 KPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGV 129
+PG +P P GE G G++G G P +EG R+ + G+ G G
Sbjct: 1298 EPGQPGSPGPT----GENGPPGPLGKRGPAGSPGSEG-------RQGGKGAKGDPGAIGA 1346
Query: 130 PWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWRE 189
P + G P+ G PG G G+P G RP PG G G+P
Sbjct: 1347 PGKTG----PVGPAGPAGKPGPDGLRGLPGSVGQQGRP-GATGQAGPPGPVGPPGLPGLR 1401
Query: 190 GGVWRPLERR--------GSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGV 241
G E+ G GEKG+ G+P +G SPGQKGE G+
Sbjct: 1402 GDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQG-------------SPGQKGEMGI 1448
Query: 242 PWREGAVW-----------RPLDRRGSVASPGEKGECGVRWREG 274
P G + P +G+ G KGE GV+ G
Sbjct: 1449 PGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPG 1492
Score = 67.0 bits (162), Expect = 2e-11
Identities = 60/193 (31%), Positives = 76/193 (39%), Gaps = 30/193 (15%)
Query: 85 GEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGRVWRPLDRRG 144
GE GH G GE G+P T G+ + G+ G G P ++G P RG
Sbjct: 940 GERGHPGPPGPPGEQGLPGTAGK----------EGTKGDPGPPGAPGKDG----PAGLRG 985
Query: 145 SVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGGVWRPLERRGSVAS 204
G G G P +G P SPG++G G GG P R G
Sbjct: 986 FPGERGLPGTAGGPGLKGNE-GPSGPPGPAGSPGERGAAG----SGGPIGPPGRPGPQGP 1040
Query: 205 PGEKGECGVPWREGRVWRPLER---RASVASPGQKGECGVPWREGAVWRPLDRRGSVASP 261
PG GE GVP +G + P R + V PG G GV +G +G V P
Sbjct: 1041 PGAAGEKGVPGEKGPI-GPTGRDGVQGPVGLPGPAGPPGVAGEDG-------DKGEVGDP 1092
Query: 262 GEKGECGVRWREG 274
G+KG G + G
Sbjct: 1093 GQKGTKGNKGEHG 1105
Score = 62.8 bits (151), Expect = 4e-10
Identities = 69/240 (28%), Positives = 89/240 (37%), Gaps = 37/240 (15%)
Query: 67 LSAKPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGE 126
+ +PG V PR R GE+G G G G +G P V PG+ G
Sbjct: 1223 IQGEPG-VKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNP----GPVGFPGDPGP 1277
Query: 127 CGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVP 186
G G+ DR G PG+ G G P E G PL +R SPG +G G
Sbjct: 1278 PGEGGPRGQDGAKGDR-GEDGEPGQPGSPG-PTGENGPPGPLGKRGPAGSPGSEGRQGGK 1335
Query: 187 WREG--------GVWRPLERRGSVASPGEKGECGVPWREGRVWRP-LERRASVASP---- 233
+G G P+ G PG G G+P G+ RP +A P
Sbjct: 1336 GAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPP 1395
Query: 234 ---------GQKGECGVPWREGAVWRPLDRR--------GSVASPGEKGECGVRWREGRV 276
G KGE G P G + P ++ G SPG+KGE G+ G +
Sbjct: 1396 GLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPI 1455
Score = 59.7 bits (143), Expect = 3e-09
Identities = 63/201 (31%), Positives = 79/201 (39%), Gaps = 15/201 (7%)
Query: 81 RSIDGEAGHSEAAGEKGECGIPWTEG--QVWRPLERRASVASPGEKGECGVPWREGRVWR 138
R + GE+G G KG GIP G + P + S+ GE G G G
Sbjct: 600 RGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGL 659
Query: 139 PLDRRGSVASPGEKGECGVPWREG--GVWRPLERRASVASPGQKGECGVPWREGGVWRPL 196
P +G++ GEKG G P G G P PG KG G +G + P
Sbjct: 660 P-GPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPG 718
Query: 197 ER--------RGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAV 248
R RG GEKGE G P +G + + R V PG +GE G +G
Sbjct: 719 PRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGD-RGEVGVPGSRGEDGPEGPKGRT 777
Query: 249 WRPLDRRGSVASPGEKGECGV 269
P G GEKG+ GV
Sbjct: 778 -GPTGDPGPPGLMGEKGKLGV 797
Score = 56.2 bits (134), Expect = 3e-08
Identities = 73/270 (27%), Positives = 97/270 (35%), Gaps = 38/270 (14%)
Query: 23 GALTIVSSHGGDSDKDLCARTQIYGAQPREDQMGSVEKLTTSAFLSAKPGSVPAPRPLRS 82
G + + S G D + RT G MG KL PG P S
Sbjct: 757 GEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGL----PGYPGRQGPKGS 812
Query: 83 IDGEAGHSEAAGEKGECGI-----PWTEGQVWRPLERRASVASPGEKGECGVPWREGRVW 137
+ G G A+GEKG G+ P E P +R + G+ G G +G
Sbjct: 813 L-GFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHG 871
Query: 138 RPLDR-----RGSVASPGEKGECGVPWREGGVWRPLER-----RASVASPGQKGECGVPW 187
P +R +G PG KG G P ++G P +R + PG G G P
Sbjct: 872 PPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVG-PQ 930
Query: 188 REGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGA 247
G P+ RG PG GE G+P G+ + G G G P ++G
Sbjct: 931 GAAGETGPMGERGHPGPPGPPGEQGLPGTAGK----------EGTKGDPGPPGAPGKDG- 979
Query: 248 VWRPLDRRGSVAS---PGEKGECGVRWREG 274
P RG PG G G++ EG
Sbjct: 980 ---PAGLRGFPGERGLPGTAGGPGLKGNEG 1006
Score = 53.1 bits (126), Expect = 3e-07
Identities = 60/220 (27%), Positives = 79/220 (35%), Gaps = 42/220 (19%)
Query: 85 GEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGRVWRPLDRRG 144
G GH A G++G G G P+ + GEKGE G G P RG
Sbjct: 1132 GPQGHFGAKGDEGTRGFNGPPG----PIGLQGLPGPSGEKGETGDVGPMGPPGPP-GPRG 1186
Query: 145 SVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREG--GVWRPLERRGSV 202
G G G P G + P E+ G+ GE G P +G GV P RG
Sbjct: 1187 PAGPNGADGPQGPPGGVGNLGPPGEK-------GEPGESGSPGIQGEPGVKGPRGERGEK 1239
Query: 203 ASPGEKGECGVPWREGRVWRPLER--------------------RASVASPGQKGECGVP 242
G+ GE G P +G + R + G +GE G P
Sbjct: 1240 GESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEP 1299
Query: 243 WREGAVW--------RPLDRRGSVASPGEKGECGVRWREG 274
+ G+ PL +RG SPG +G G + +G
Sbjct: 1300 GQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKG 1339
Score = 48.9 bits (115), Expect = 6e-06
Identities = 56/192 (29%), Positives = 71/192 (36%), Gaps = 18/192 (9%)
Query: 85 GEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGRVWRPLDRRG 144
GE G GE G G+P G P PG G GV +G P +G
Sbjct: 586 GEDGERGDDGEIGPRGLPGESG----PRGLLGPKGPPGIPGPPGVRGMDG----PQGPKG 637
Query: 145 SVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGGVWRPLERRGSVAS 204
S+ GE G G G P + A + G+KG G P G GS
Sbjct: 638 SLGPQGEPGPPGQQGTPGTQGLPGPQGA-IGPHGEKGPQGKPGLPG-------MPGSDGP 689
Query: 205 PGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWRPLDRRGSVASPGEK 264
PG G+ G P +G P + + PG +G GV G +G PG K
Sbjct: 690 PGHPGKEGPPGTKGNQG-PSGPQGPLGYPGPRGVKGVDGIRGLKGHK-GEKGEDGFPGFK 747
Query: 265 GECGVRWREGRV 276
G+ GV+ G V
Sbjct: 748 GDIGVKGDRGEV 759
Score = 47.0 bits (110), Expect = 2e-05
Identities = 59/210 (28%), Positives = 74/210 (35%), Gaps = 13/210 (6%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVP 130
P P+ L G+AG AG G G+P G V PGEKG G
Sbjct: 518 PQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPG-VKGDRGFDGLPGLPGEKGHRGDT 576
Query: 131 WREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREG 190
+G + P G GE G G+P G P PG G GV +G
Sbjct: 577 GAQG-LPGPPGEDGERGDDGEIGPRGLPGESG----PRGLLGPKGPPGIPGPPGVRGMDG 631
Query: 191 GVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWR 250
P +GS+ GE G G G P + ++ G+KG G P G
Sbjct: 632 ----PQGPKGSLGPQGEPGPPGQQGTPGTQGLP-GPQGAIGPHGEKGPQGKPGLPGMPGS 686
Query: 251 --PLDRRGSVASPGEKGECGVRWREGRVWY 278
P G PG KG G +G + Y
Sbjct: 687 DGPPGHPGKEGPPGTKGNQGPSGPQGPLGY 716
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 73.6 bits (179), Expect = 2e-13
Identities = 64/205 (31%), Positives = 82/205 (40%), Gaps = 46/205 (22%)
Query: 75 PAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREG 134
P P+ L+ + G G GE G+ G P +G P +PG KG+ G P G
Sbjct: 635 PGPQGLQGLPGTGG---PPGENGKPGEPGPKGDAGAP-------GAPGGKGDAGAPGERG 684
Query: 135 RVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGGVWR 194
G +PG +G G P EGG + + PG G G P +G
Sbjct: 685 PP-------GLAGAPGLRGGAGPPGPEGG-------KGAAGPPGPPGAAGTPGLQG---M 727
Query: 195 PLERRGSVASPGEKGE---------CGVPWREG--RVWRPLERRASVASPGQKGECGVPW 243
P E RG + SPG KG+ GVP ++G P+ PG KGE G P
Sbjct: 728 PGE-RGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPG 786
Query: 244 REGAVWRPLDRRGSVASPGEKGECG 268
G G SPGE+GE G
Sbjct: 787 LPGIA-------GPRGSPGERGETG 804
Score = 73.2 bits (178), Expect = 3e-13
Identities = 65/217 (29%), Positives = 81/217 (37%), Gaps = 28/217 (12%)
Query: 69 AKPGSVPA---PRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKG 125
A P +P P R G AG AAGE G G+P G P S PG G
Sbjct: 494 AGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMP----GSPGGPGSDG 549
Query: 126 ECGVPWREGRVWR--------PLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASP 177
+ G P +G R P + G + PG KG G P + G P P
Sbjct: 550 KPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGP-GGPGPQGPP 608
Query: 178 GQKGECGVPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKG 237
G+ GE G P G P +G PG +G G+P G P PG KG
Sbjct: 609 GKNGETG-PQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGG----PPGENGKPGEPGPKG 663
Query: 238 ECGVPWREGAVWRPLDRRGSVASPGEKGECGVRWREG 274
+ G P G +G +PGE+G G+ G
Sbjct: 664 DAGAPGAPGG-------KGDAGAPGERGPPGLAGAPG 693
Score = 72.0 bits (175), Expect = 6e-13
Identities = 70/223 (31%), Positives = 87/223 (39%), Gaps = 20/223 (8%)
Query: 71 PGSVPAPRPLRSIDGEAGH---SEAAGEKGECGIPWTEGQVWRPLERRA-----SVASPG 122
P + P + G GH GEKGE G P +G+ P E A +PG
Sbjct: 247 PPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPG 306
Query: 123 EKGECGVPWREGRVWRPLDR--RGSVASPGEKGECGVPWREG--GVWRPLERRASVASPG 178
E+G G+P G R G PG G G P G G P S +PG
Sbjct: 307 ERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPG 366
Query: 179 QKGECGVPWREGGVWRPLERRGSVASPGEKGE---CGVPWREGRVWR--PLERRASVASP 233
Q+GE G P G P G SPG KGE G+P G + P + +P
Sbjct: 367 QRGEPG-PQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAP 425
Query: 234 GQKGECGVPWREGAVWRPLDR--RGSVASPGEKGECGVRWREG 274
G +G G P + GA P R RG PG G G ++G
Sbjct: 426 GLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDG 468
Score = 70.9 bits (172), Expect = 1e-12
Identities = 63/202 (31%), Positives = 75/202 (37%), Gaps = 22/202 (10%)
Query: 75 PAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREG 134
P P + G G AAG G G+P G + P + PG G GVP ++G
Sbjct: 701 PGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSP-GPKGDKGEPGGPGADGVPGKDG 759
Query: 135 R--VWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGGV 192
P+ G PG+KGE G P G SPG++GE G P G
Sbjct: 760 PRGPTGPIGPPGPAGQPGDKGEGGAPGLPG-------IAGPRGSPGERGETGPPGPAGFP 812
Query: 193 WRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWRPL 252
P G PG KGE G P +G P PG G G P +G
Sbjct: 813 GAP----GQNGEPGGKGERGAPGEKGEGGPP----GVAGPPGGSGPAGPPGPQGV----K 860
Query: 253 DRRGSVASPGEKGECGVRWREG 274
RGS PG G G R G
Sbjct: 861 GERGSPGGPGAAGFPGARGLPG 882
Score = 70.5 bits (171), Expect = 2e-12
Identities = 67/203 (33%), Positives = 84/203 (41%), Gaps = 26/203 (12%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVP 130
PG++ P DGE+G GE+G G P +G P PG KG G
Sbjct: 218 PGAIGPSGPAGK-DGESGRPGRPGERGLPGPPGIKGPAGIP-------GFPGMKGHRGFD 269
Query: 131 WREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREG 190
R G +G +PG KGE G+P E G P+ R +PG++G G+P G
Sbjct: 270 GRNG-------EKGETGAPGLKGENGLP-GENGAPGPMGPR---GAPGERGRPGLPGAAG 318
Query: 191 -----GVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWRE 245
G + G PG G G P +G V P S +PGQ+GE G
Sbjct: 319 ARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEV-GPAGSPGSNGAPGQRGEPGPQGHA 377
Query: 246 GAVWRPLDRRGSVASPGEKGECG 268
GA P G SPG KGE G
Sbjct: 378 GAQGPP-GPPGINGSPGGKGEMG 399
Score = 65.9 bits (159), Expect = 4e-11
Identities = 66/219 (30%), Positives = 84/219 (38%), Gaps = 31/219 (14%)
Query: 82 SIDGEAGHSEAAGEKGECGIPWTEGQVWRPLE--RRASVASPGEKGECGVP--------- 130
++ G AG+ AG G G P T G P + PG+ G G P
Sbjct: 165 AVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPS 224
Query: 131 ------WREGRVWRPLDRRGSVASPGEKGECGVPWREG-----GVWRPLERRASVASPGQ 179
GR RP RG PG KG G+P G G + +PG
Sbjct: 225 GPAGKDGESGRPGRP-GERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGL 283
Query: 180 KGECGVPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRA--SVASPGQKG 237
KGE G+P E G P+ RG +PGE+G G+P G R + PG G
Sbjct: 284 KGENGLP-GENGAPGPMGPRG---APGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPG 339
Query: 238 ECGVPWREGAVWR--PLDRRGSVASPGEKGECGVRWREG 274
G P GA P GS +PG++GE G + G
Sbjct: 340 TAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAG 378
Score = 63.2 bits (152), Expect = 3e-10
Identities = 63/215 (29%), Positives = 78/215 (36%), Gaps = 25/215 (11%)
Query: 75 PAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRP--LERRASVASPGEKGECGVPWR 132
P PR R G G A GE G+ G P G P R + G G G+P
Sbjct: 443 PGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGE 502
Query: 133 EGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGGV 192
+G P RG+ G +G G P R+G PG +G G P G
Sbjct: 503 KG----PAGERGAPGPAGPRGAAGEPGRDG----------VPGGPGMRGMPGSPGGPGSD 548
Query: 193 WRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWRPL 252
+P G S GE G G P G P + + PG KG G P + G P
Sbjct: 549 GKP----GPPGSQGESGRPGPPGPSG----PRGQPGVMGFPGPKGNDGAPGKNGERGGP- 599
Query: 253 DRRGSVASPGEKGECGVRWREGRVWYSLDKRGSVP 287
G PG+ GE G + G DK + P
Sbjct: 600 GGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGP 634
Score = 58.5 bits (140), Expect = 7e-09
Identities = 64/234 (27%), Positives = 83/234 (35%), Gaps = 37/234 (15%)
Query: 68 SAKPGS--------VPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVA 119
S KPG+ P P+ L + G AG G G G+P +G +R +
Sbjct: 980 SGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGEN-G 1038
Query: 120 SPGEKGECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREG--GVWRPLERRASVASP 177
SPG G G P G V P + G G G G P G G P R
Sbjct: 1039 SPGAPGAPGHPGPPGPVG-PAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGET 1097
Query: 178 GQKGECGVPWREG--------GVWRPLERRGSVASPGEKGE------CGVPWREGRVWRP 223
G++G G+ G G P ++G++ SPG G G P ++G P
Sbjct: 1098 GERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHP 1157
Query: 224 -----------LERRASVASPGQKGECGVPWREGAVWRPLDRRGSVASPGEKGE 266
R S SPG G+ G P GA G+ A G GE
Sbjct: 1158 GPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAAIAGIGGE 1211
Score = 57.8 bits (138), Expect = 1e-08
Identities = 74/255 (29%), Positives = 93/255 (36%), Gaps = 35/255 (13%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVP 130
P P P+ ++ G G AAG G G+P G S +PG G G P
Sbjct: 850 PAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPG----------SNGNPGPPGPSGSP 899
Query: 131 WREGRVWRPLDRRGSVASP---GEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPW 187
++G P G+ SP G KG+ G P +G + +PG G G+
Sbjct: 900 GKDGPP-GPAGNTGAPGSPGVSGPKGDAGQPGEKGSP----GAQGPPGAPGPLGIAGITG 954
Query: 188 REGGVWRP--LERRGSVASPGEKGECGVPWREGRVW-------RPLERRASVAS----PG 234
G P RGS G KGE G P G + L A A G
Sbjct: 955 ARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDG 1014
Query: 235 QKGECGVPWREGAVWRPLDR--RGSVASPGEKGECGVRWREGRVWYSLDKRGSVPA--AL 290
G G+P R+G+ DR GS +PG G G G S D+ S PA A
Sbjct: 1015 NPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAG 1074
Query: 291 ASQRHALLALPQPQG 305
A P PQG
Sbjct: 1075 APGPAGSRGAPGPQG 1089
Score = 56.6 bits (135), Expect = 3e-08
Identities = 65/232 (28%), Positives = 85/232 (36%), Gaps = 33/232 (14%)
Query: 68 SAKPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVA-----SPG 122
+ PG P P DG G + G G G+ +G +P E+ + A +PG
Sbjct: 887 NGNPGP-PGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPG 945
Query: 123 EKGECGVPWREGRVWRP--LDRRGSVASPGEKGECGVPWREG--GVWRP-----LERRAS 173
G G+ G P RGS G KGE G P G G P L A
Sbjct: 946 PLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAG 1005
Query: 174 VASP----GQKGECGVPWREGGVWRPLER--RGSVASPGEKGECGVPWREGRVWRPLERR 227
A G G G+P R+G +R GS +PG G G P G + +R
Sbjct: 1006 TAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRG 1065
Query: 228 AS-----VASPGQKGECGVPWREGAVWRPLDRRGSVASPGEKGECGVRWREG 274
S +PG G G P +G RG GE+G G++ G
Sbjct: 1066 ESGPAGPAGAPGPAGSRGAPGPQGP-------RGDKGETGERGAAGIKGHRG 1110
Score = 38.5 bits (88), Expect = 0.007
Identities = 42/148 (28%), Positives = 55/148 (37%), Gaps = 16/148 (10%)
Query: 138 RPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGV----PWREGGVW 193
RP + +G G+ G G+P R G P + S SPG G C P +
Sbjct: 97 RPPNGQGPQGPKGDPGPPGIPGRNGDPGIP-GQPGSPGSPGPPGICESCPTGPQNYSPQY 155
Query: 194 RPLERRGSVA------SPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGA 247
+ + VA PG G G P G P S SPG +G G P + G
Sbjct: 156 DSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHP----GSPGSPGYQGPPGEPGQAGP 211
Query: 248 VWRPLDRRGSVASPGEKGECGVRWREGR 275
P G++ G G+ G R GR
Sbjct: 212 SGPP-GPPGAIGPSGPAGKDGESGRPGR 238
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 73.2 bits (178), Expect = 3e-13
Identities = 67/211 (31%), Positives = 88/211 (41%), Gaps = 24/211 (11%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVP 130
PG V PR R GE G A G +G G+P T G P PG +G G+
Sbjct: 692 PGLV-GPRGERGFPGERGSPGAQGLQGPRGLPGTPG-TDGPKGASGPAGPPGAQGPPGLQ 749
Query: 131 WREGR-----VWRPLDRRGSVASPGEKGECGVPWREG--GVWRPLERRASVASPGQKGEC 183
G + P RG V GEKG G P ++G G+ P+ + G+KGE
Sbjct: 750 GMPGERGAAGIAGPKGDRGDV---GEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEV 806
Query: 184 GVPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPW 243
G P G G+ +PGE+GE G P G P + PG KGE G
Sbjct: 807 GPPGPAGSA-------GARGAPGERGETGPPGPAGFAGPP----GADGQPGAKGEQGEAG 855
Query: 244 REGAVWRPLDRRGSVASPGEKGECGVRWREG 274
++G P +G +PG +G GV +G
Sbjct: 856 QKGDAGAP-GPQGPSGAPGPQGPTGVTGPKG 885
Score = 71.2 bits (173), Expect = 1e-12
Identities = 64/216 (29%), Positives = 82/216 (37%), Gaps = 39/216 (18%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVP 130
P P P+ + G G A G G G P G+V P S +PG G G
Sbjct: 868 PSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPP----GSNGNPGPPGPPGPS 923
Query: 131 WREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREG 190
++G P RG PG GE G+ + PG+KGE G G
Sbjct: 924 GKDG----PKGARGDSGPPGRAGEPGL-------------QGPAGPPGEKGEPGDDGPSG 966
Query: 191 GVWRP-----LERRGSVASPGEKGECGVPWREGRVWRPLERRASVAS-----------PG 234
P +RG V PG++GE G P G P ++ A AS PG
Sbjct: 967 AEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPG 1026
Query: 235 QKGECGVPWREGAVWR--PLDRRGSVASPGEKGECG 268
G G P REG+ P R G+ G++GE G
Sbjct: 1027 LTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETG 1062
Score = 69.3 bits (168), Expect = 4e-12
Identities = 61/201 (30%), Positives = 75/201 (37%), Gaps = 29/201 (14%)
Query: 75 PAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREG 134
P L + G G+ G KGE G P +G+ P E SPG G G+P G
Sbjct: 278 PGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGEN----GSPGPMGPRGLPGERG 333
Query: 135 RVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREG--GV 192
R P G+ + G+ G G P G P +PG KGE G G G
Sbjct: 334 RT-GPAGAAGARGNDGQPGPAGPPGPVGPAGGP----GFPGAPGAKGEAGPTGARGPEGA 388
Query: 193 WRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWRPL 252
P G+ SPG G G P +G PG KG G P GA P
Sbjct: 389 QGPRGEPGTPGSPGPAGASGNPGTDG-------------IPGAKGSAGAPGIAGAPGFPG 435
Query: 253 DR-----RGSVASPGEKGECG 268
R +G+ G KG+ G
Sbjct: 436 PRGPPGPQGATGPLGPKGQTG 456
Score = 66.6 bits (161), Expect = 3e-11
Identities = 59/201 (29%), Positives = 81/201 (40%), Gaps = 32/201 (15%)
Query: 81 RSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGRVWRPL 140
+ + GEAG G +GE G P G + G +G G P +G P
Sbjct: 683 QGVPGEAGAPGLVGPRGERGFPGERGS-------PGAQGLQGPRGLPGTPGTDG----PK 731
Query: 141 DRRGSVASPGEKGECGVPWREG-----GVWRPLERRASVASPGQKGECGVPWREG--GVW 193
G PG +G G+ G G+ P R V G+KG G P ++G G+
Sbjct: 732 GASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDV---GEKGPEGAPGKDGGRGLT 788
Query: 194 RPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWRPLD 253
P+ G + GEKGE G P P + +PG++GE G P G P
Sbjct: 789 GPIGPPGPAGANGEKGEVGPP-------GPAGSAGARGAPGERGETGPPGPAGFAGPP-- 839
Query: 254 RRGSVASPGEKGECGVRWREG 274
G+ PG KGE G ++G
Sbjct: 840 --GADGQPGAKGEQGEAGQKG 858
Score = 63.9 bits (154), Expect = 2e-10
Identities = 61/200 (30%), Positives = 71/200 (35%), Gaps = 34/200 (17%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVP 130
P P P DGEAG AGE+G G G P PG KG G P
Sbjct: 241 PRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTP-------GLPGVKGHRGYP 293
Query: 131 WREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREG 190
+G +G +PG KGE G P G SPG G G+P E
Sbjct: 294 GLDG-------AKGEAGAPGVKGESGSPGENG-------------SPGPMGPRGLP-GER 332
Query: 191 GVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREG--AV 248
G P G+ + G+ G G P G P +PG KGE G G
Sbjct: 333 GRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGP----GFPGAPGAKGEAGPTGARGPEGA 388
Query: 249 WRPLDRRGSVASPGEKGECG 268
P G+ SPG G G
Sbjct: 389 QGPRGEPGTPGSPGPAGASG 408
Score = 60.1 bits (144), Expect = 2e-09
Identities = 63/231 (27%), Positives = 88/231 (38%), Gaps = 32/231 (13%)
Query: 70 KPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLER-----RASVASPGEK 124
+PG+ +P P + G G G KG G P G P R + + G K
Sbjct: 394 EPGTPGSPGPAGA-SGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPK 452
Query: 125 GECGVPWREGRVWR--------PLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVAS 176
G+ G P G P +G+ GE+G+ G GGV P+ +
Sbjct: 453 GQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVG-PIGPPGERGA 511
Query: 177 PGQKGECGVPWREGGVWRPLER--------RGSVASPGEKGECGVPWREGRVWRPLE--- 225
PG +G G G P ER +G+ PG GE G+P G RP +
Sbjct: 512 PGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGP 571
Query: 226 --RRASVASPGQKGECGVPWREGAVWRPLDRRGSVASPGEKGECGVRWREG 274
+ +PG+ G G P +GA +P G + PG KG G + G
Sbjct: 572 QGKVGPSGAPGEDGRPGPPGPQGARGQP----GVMGFPGPKGANGEPGKAG 618
Score = 58.5 bits (140), Expect = 7e-09
Identities = 62/234 (26%), Positives = 86/234 (36%), Gaps = 50/234 (21%)
Query: 75 PAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWR--------PLERRASVASPGEKGE 126
P P+ G+AG G G G+P +G+ P R +PG G
Sbjct: 605 PGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGF 664
Query: 127 CGV---PWREGRVWRPLDR--------------RGSVASPGEKGECGVPWREG------- 162
G+ P G +P D+ RG PGE+G G +G
Sbjct: 665 QGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGT 724
Query: 163 -GVWRPLERRASVASPGQKGECGVPWREG-----GVWRPLERRGSVASPGEKGECGVPWR 216
G P PG +G G+ G G+ P RG V GEKG G P +
Sbjct: 725 PGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDV---GEKGPEGAPGK 781
Query: 217 EG--RVWRPLERRASVASPGQKGECGVPWREGAVWRPLDRRGSVASPGEKGECG 268
+G + P+ + G+KGE G P G+ G+ +PGE+GE G
Sbjct: 782 DGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSA-------GARGAPGERGETG 828
Score = 53.5 bits (127), Expect = 2e-07
Identities = 59/208 (28%), Positives = 70/208 (33%), Gaps = 32/208 (15%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVP 130
P PR R GE G G GE G P G PG G G P
Sbjct: 127 PAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPG-------------PPGPPGPPGPP 173
Query: 131 WREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREG 190
G G + GV G P +PG +G G P G
Sbjct: 174 GLGGNF--AAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPG 231
Query: 191 --GVWRPLERR---GSVASPGEKGECGVPWREGRVWRPLERRA-----SVASPGQKGECG 240
GV P+ R G PG+ GE G P + G P + A + PG KG G
Sbjct: 232 EPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRG 291
Query: 241 VPWREGAVWRPLDRRGSVASPGEKGECG 268
P +GA +G +PG KGE G
Sbjct: 292 YPGLDGA-------KGEAGAPGVKGESG 312
Score = 38.5 bits (88), Expect = 0.007
Identities = 53/208 (25%), Positives = 66/208 (31%), Gaps = 40/208 (19%)
Query: 61 LTTSAFLSAKPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVAS 120
LT A + GS A P DG AG GE G G P G
Sbjct: 1027 LTGPAGEPGREGSPGADGP-PGRDGAAGVKGDRGETGAVGAPGAPG-------------P 1072
Query: 121 PGEKGECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQK 180
PG G G ++G RG + G G G P G+ P R G+
Sbjct: 1073 PGSPGPAGPTGKQG-------DRGEAGAQGPMGPSG-PAGARGIQGPQGPRGDKGEAGEP 1124
Query: 181 GECGVPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECG 240
GE G+ G +G PG G+ G G P V G+ G G
Sbjct: 1125 GERGLKGHRGFT----GLQGLPGPPGPSGDQGASGPAGPS-GPRGPPGPVGPSGKDGANG 1179
Query: 241 VPWREGAVWRPLDRRGSVASPGEKGECG 268
+P G + PG +G G
Sbjct: 1180 IP-------------GPIGPPGPRGRSG 1194
Score = 34.3 bits (77), Expect = 0.14
Identities = 42/168 (25%), Positives = 57/168 (33%), Gaps = 39/168 (23%)
Query: 95 EKGEC---GIPWTEGQVWRPLERRASVASPG----------EKGEC---GVPWREGRVWR 138
E G C G + + VW+P R V G + +C +P+ E
Sbjct: 30 EAGSCVQDGQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCPIC 89
Query: 139 PLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGGVWRPLER 198
P D + PG KG+ G P + P PG +G G
Sbjct: 90 PTDLATASGQPGPKGQKGEPGDIKDIVGPK------GPPGPQGPAG-------------E 130
Query: 199 RGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREG 246
+G G+KGE G P GR P + +PG G G P G
Sbjct: 131 QGPRGDRGDKGEKGAPGPRGRDGEP----GTPGNPGPPGPPGPPGPPG 174
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 73.2 bits (178), Expect = 3e-13
Identities = 67/211 (31%), Positives = 88/211 (41%), Gaps = 24/211 (11%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVP 130
PG V PR R GE G A G +G G+P T G P PG +G G+
Sbjct: 623 PGLV-GPRGERGFPGERGSPGAQGLQGPRGLPGTPG-TDGPKGASGPAGPPGAQGPPGLQ 680
Query: 131 WREGR-----VWRPLDRRGSVASPGEKGECGVPWREG--GVWRPLERRASVASPGQKGEC 183
G + P RG V GEKG G P ++G G+ P+ + G+KGE
Sbjct: 681 GMPGERGAAGIAGPKGDRGDV---GEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEV 737
Query: 184 GVPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPW 243
G P G G+ +PGE+GE G P G P + PG KGE G
Sbjct: 738 GPPGPAGSA-------GARGAPGERGETGPPGPAGFAGPP----GADGQPGAKGEQGEAG 786
Query: 244 REGAVWRPLDRRGSVASPGEKGECGVRWREG 274
++G P +G +PG +G GV +G
Sbjct: 787 QKGDAGAP-GPQGPSGAPGPQGPTGVTGPKG 816
Score = 71.2 bits (173), Expect = 1e-12
Identities = 64/216 (29%), Positives = 82/216 (37%), Gaps = 39/216 (18%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVP 130
P P P+ + G G A G G G P G+V P S +PG G G
Sbjct: 799 PSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPP----GSNGNPGPPGPPGPS 854
Query: 131 WREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREG 190
++G P RG PG GE G+ + PG+KGE G G
Sbjct: 855 GKDG----PKGARGDSGPPGRAGEPGL-------------QGPAGPPGEKGEPGDDGPSG 897
Query: 191 GVWRP-----LERRGSVASPGEKGECGVPWREGRVWRPLERRASVAS-----------PG 234
P +RG V PG++GE G P G P ++ A AS PG
Sbjct: 898 AEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPG 957
Query: 235 QKGECGVPWREGAVWR--PLDRRGSVASPGEKGECG 268
G G P REG+ P R G+ G++GE G
Sbjct: 958 LTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETG 993
Score = 69.3 bits (168), Expect = 4e-12
Identities = 61/201 (30%), Positives = 75/201 (37%), Gaps = 29/201 (14%)
Query: 75 PAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREG 134
P L + G G+ G KGE G P +G+ P E SPG G G+P G
Sbjct: 209 PGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGEN----GSPGPMGPRGLPGERG 264
Query: 135 RVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREG--GV 192
R P G+ + G+ G G P G P +PG KGE G G G
Sbjct: 265 RT-GPAGAAGARGNDGQPGPAGPPGPVGPAGGP----GFPGAPGAKGEAGPTGARGPEGA 319
Query: 193 WRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWRPL 252
P G+ SPG G G P +G PG KG G P GA P
Sbjct: 320 QGPRGEPGTPGSPGPAGASGNPGTDG-------------IPGAKGSAGAPGIAGAPGFPG 366
Query: 253 DR-----RGSVASPGEKGECG 268
R +G+ G KG+ G
Sbjct: 367 PRGPPGPQGATGPLGPKGQTG 387
Score = 66.6 bits (161), Expect = 3e-11
Identities = 59/201 (29%), Positives = 81/201 (40%), Gaps = 32/201 (15%)
Query: 81 RSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGRVWRPL 140
+ + GEAG G +GE G P G + G +G G P +G P
Sbjct: 614 QGVPGEAGAPGLVGPRGERGFPGERGS-------PGAQGLQGPRGLPGTPGTDG----PK 662
Query: 141 DRRGSVASPGEKGECGVPWREG-----GVWRPLERRASVASPGQKGECGVPWREG--GVW 193
G PG +G G+ G G+ P R V G+KG G P ++G G+
Sbjct: 663 GASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDV---GEKGPEGAPGKDGGRGLT 719
Query: 194 RPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWRPLD 253
P+ G + GEKGE G P P + +PG++GE G P G P
Sbjct: 720 GPIGPPGPAGANGEKGEVGPP-------GPAGSAGARGAPGERGETGPPGPAGFAGPP-- 770
Query: 254 RRGSVASPGEKGECGVRWREG 274
G+ PG KGE G ++G
Sbjct: 771 --GADGQPGAKGEQGEAGQKG 789
Score = 63.9 bits (154), Expect = 2e-10
Identities = 61/200 (30%), Positives = 71/200 (35%), Gaps = 34/200 (17%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVP 130
P P P DGEAG AGE+G G G P PG KG G P
Sbjct: 172 PRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTP-------GLPGVKGHRGYP 224
Query: 131 WREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREG 190
+G +G +PG KGE G P G SPG G G+P E
Sbjct: 225 GLDG-------AKGEAGAPGVKGESGSPGENG-------------SPGPMGPRGLP-GER 263
Query: 191 GVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREG--AV 248
G P G+ + G+ G G P G P +PG KGE G G
Sbjct: 264 GRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGP----GFPGAPGAKGEAGPTGARGPEGA 319
Query: 249 WRPLDRRGSVASPGEKGECG 268
P G+ SPG G G
Sbjct: 320 QGPRGEPGTPGSPGPAGASG 339
Score = 60.1 bits (144), Expect = 2e-09
Identities = 63/231 (27%), Positives = 88/231 (38%), Gaps = 32/231 (13%)
Query: 70 KPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLER-----RASVASPGEK 124
+PG+ +P P + G G G KG G P G P R + + G K
Sbjct: 325 EPGTPGSPGPAGA-SGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPK 383
Query: 125 GECGVPWREGRVWR--------PLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVAS 176
G+ G P G P +G+ GE+G+ G GGV P+ +
Sbjct: 384 GQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVG-PIGPPGERGA 442
Query: 177 PGQKGECGVPWREGGVWRPLER--------RGSVASPGEKGECGVPWREGRVWRPLE--- 225
PG +G G G P ER +G+ PG GE G+P G RP +
Sbjct: 443 PGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGP 502
Query: 226 --RRASVASPGQKGECGVPWREGAVWRPLDRRGSVASPGEKGECGVRWREG 274
+ +PG+ G G P +GA +P G + PG KG G + G
Sbjct: 503 QGKVGPSGAPGEDGRPGPPGPQGARGQP----GVMGFPGPKGANGEPGKAG 549
Score = 58.5 bits (140), Expect = 7e-09
Identities = 62/234 (26%), Positives = 86/234 (36%), Gaps = 50/234 (21%)
Query: 75 PAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWR--------PLERRASVASPGEKGE 126
P P+ G+AG G G G+P +G+ P R +PG G
Sbjct: 536 PGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGF 595
Query: 127 CGV---PWREGRVWRPLDR--------------RGSVASPGEKGECGVPWREG------- 162
G+ P G +P D+ RG PGE+G G +G
Sbjct: 596 QGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGT 655
Query: 163 -GVWRPLERRASVASPGQKGECGVPWREG-----GVWRPLERRGSVASPGEKGECGVPWR 216
G P PG +G G+ G G+ P RG V GEKG G P +
Sbjct: 656 PGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDV---GEKGPEGAPGK 712
Query: 217 EG--RVWRPLERRASVASPGQKGECGVPWREGAVWRPLDRRGSVASPGEKGECG 268
+G + P+ + G+KGE G P G+ G+ +PGE+GE G
Sbjct: 713 DGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSA-------GARGAPGERGETG 759
Score = 53.5 bits (127), Expect = 2e-07
Identities = 59/208 (28%), Positives = 70/208 (33%), Gaps = 32/208 (15%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVP 130
P PR R GE G G GE G P G PG G G P
Sbjct: 58 PAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPG-------------PPGPPGPPGPP 104
Query: 131 WREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREG 190
G G + GV G P +PG +G G P G
Sbjct: 105 GLGGNF--AAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPG 162
Query: 191 --GVWRPLERR---GSVASPGEKGECGVPWREGRVWRPLERRA-----SVASPGQKGECG 240
GV P+ R G PG+ GE G P + G P + A + PG KG G
Sbjct: 163 EPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRG 222
Query: 241 VPWREGAVWRPLDRRGSVASPGEKGECG 268
P +GA +G +PG KGE G
Sbjct: 223 YPGLDGA-------KGEAGAPGVKGESG 243
Score = 38.5 bits (88), Expect = 0.007
Identities = 53/208 (25%), Positives = 66/208 (31%), Gaps = 40/208 (19%)
Query: 61 LTTSAFLSAKPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVAS 120
LT A + GS A P DG AG GE G G P G
Sbjct: 958 LTGPAGEPGREGSPGADGP-PGRDGAAGVKGDRGETGAVGAPGAPG-------------P 1003
Query: 121 PGEKGECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQK 180
PG G G ++G RG + G G G P G+ P R G+
Sbjct: 1004 PGSPGPAGPTGKQG-------DRGEAGAQGPMGPSG-PAGARGIQGPQGPRGDKGEAGEP 1055
Query: 181 GECGVPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECG 240
GE G+ G +G PG G+ G G P V G+ G G
Sbjct: 1056 GERGLKGHRGFT----GLQGLPGPPGPSGDQGASGPAGPS-GPRGPPGPVGPSGKDGANG 1110
Query: 241 VPWREGAVWRPLDRRGSVASPGEKGECG 268
+P G + PG +G G
Sbjct: 1111 IP-------------GPIGPPGPRGRSG 1125
Score = 31.6 bits (70), Expect = 0.91
Identities = 43/163 (26%), Positives = 54/163 (33%), Gaps = 35/163 (21%)
Query: 118 VASPGEKGECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASP 177
V PG KG+ G P + P G GE+G G
Sbjct: 28 VRQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRG-------------------DR 68
Query: 178 GQKGECGVPWREGGVWRPLERRGSVASPGEKGECGVPWREG-------RVWRPLERRASV 230
G KGE G P G P G+ +PG G G P G ++ + +A
Sbjct: 69 GDKGEKGAPGPRGRDGEP----GTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGG 124
Query: 231 AS----PGQKGECGVPWREGAVWRPLDRRGSVASPGEKGECGV 269
A G G G G P +G +PGE GE GV
Sbjct: 125 AQLGVMQGPMGPMGPRGPPGPAGAP-GPQGFQGNPGEPGEPGV 166
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 72.8 bits (177), Expect = 4e-13
Identities = 66/210 (31%), Positives = 86/210 (40%), Gaps = 39/210 (18%)
Query: 84 DGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASV------ASPGEKGECGVPWREGRVW 137
DG+AG G KG+ GI T G P + SV +PGEKG G+P +G
Sbjct: 980 DGQAGQPGQPGPKGDPGISGTPGAPGLP-GPKGSVGGMGLPGTPGEKGVPGIPGPQGSPG 1038
Query: 138 RPLDR-----RGSVASP--------GEKGECGVPWREGGVWRPLERRASVASPGQKGECG 184
P D+ +G P GEKG+ G+ G E + S+ PG G G
Sbjct: 1039 LPGDKGAKGEKGQAGPPGIGIPGLRGEKGDQGIAGFPGSPGEKGE-KGSIGIPGMPGSPG 1097
Query: 185 VPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWR 244
+ G V P GS PGEKG+ G+P +G PG KGE G+P
Sbjct: 1098 LKGSPGSVGYP----GSPGLPGEKGDKGLPGLDG-------------IPGVKGEAGLPGT 1140
Query: 245 EGAVWRPLDRRGSVASPGEKGECGVRWREG 274
G P ++G S G G G + G
Sbjct: 1141 PGPT-GPAGQKGEPGSDGIPGSAGEKGEPG 1169
Score = 68.6 bits (166), Expect = 7e-12
Identities = 59/196 (30%), Positives = 84/196 (42%), Gaps = 34/196 (17%)
Query: 85 GEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGRVWRPLDRRG 144
G G + G+ G G+P +GQ +P PG KG+ G+ G P +G
Sbjct: 960 GPIGEKGSRGDPGTPGVPGKDGQAGQP-------GQPGPKGDPGISGTPGAPGLP-GPKG 1011
Query: 145 SV------ASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGGVWRPLER 198
SV +PGEKG G+P +G P ++ A G+KG+ G P G+ P
Sbjct: 1012 SVGGMGLPGTPGEKGVPGIPGPQGSPGLPGDKGAK----GEKGQAGPP----GIGIP--- 1060
Query: 199 RGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWRPLDRRGSV 258
G G++G G P G + S+ PG G G+ G+V P GS
Sbjct: 1061 -GLRGEKGDQGIAGFPGSPGE----KGEKGSIGIPGMPGSPGLKGSPGSVGYP----GSP 1111
Query: 259 ASPGEKGECGVRWREG 274
PGEKG+ G+ +G
Sbjct: 1112 GLPGEKGDKGLPGLDG 1127
Score = 67.0 bits (162), Expect = 2e-11
Identities = 70/211 (33%), Positives = 86/211 (40%), Gaps = 41/211 (19%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVA----SPGEKGE 126
PG +P P+ + G+ G A GEKG+ G P R + +A SPGEKGE
Sbjct: 1028 PG-IPGPQGSPGLPGDKG---AKGEKGQAGPPGIGIPGLRGEKGDQGIAGFPGSPGEKGE 1083
Query: 127 CG------VPWREGRVWRP--LDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPG 178
G +P G P + GS PGEKG+ G+P +G PG
Sbjct: 1084 KGSIGIPGMPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDG-------------IPG 1130
Query: 179 QKGECGVPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRP-LERRASVASPGQKG 237
KGE G+P G G GE G G+P G P L R PG KG
Sbjct: 1131 VKGEAGLPGTPGPT-------GPAGQKGEPGSDGIPGSAGEKGEPGLPGRGFPGFPGAKG 1183
Query: 238 ECGVPWREGAVWRPLDRRGSVASPGEKGECG 268
+ G +G V P GS PG KGE G
Sbjct: 1184 DKG---SKGEVGFP-GLAGSPGIPGSKGEQG 1210
Score = 66.2 bits (160), Expect = 3e-11
Identities = 65/231 (28%), Positives = 100/231 (43%), Gaps = 39/231 (16%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRP-----LERRASVASPGEKG 125
PG V AP L G+ G ++G +G+ G+ +G V P +++ + G+KG
Sbjct: 893 PGPVGAPG-LPGEKGDHGFPGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMKGQKG 951
Query: 126 ECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGV 185
+ G + G P+ +GS PG G VP ++G +P PG KG+ G+
Sbjct: 952 DQGEKGQIG----PIGEKGSRGDPGTPG---VPGKDGQAGQP-------GQPGPKGDPGI 997
Query: 186 PWREGGVWRPLERRGSVA------SPGEKGECGVPWREGRVWRPLERRAS---------- 229
G P +GSV +PGEKG G+P +G P ++ A
Sbjct: 998 SGTPGAPGLP-GPKGSVGGMGLPGTPGEKGVPGIPGPQGSPGLPGDKGAKGEKGQAGPPG 1056
Query: 230 VASPGQKGECGVPWREGAVWRPLDR--RGSVASPGEKGECGVRWREGRVWY 278
+ PG +GE G G P ++ +GS+ PG G G++ G V Y
Sbjct: 1057 IGIPGLRGEKGDQGIAGFPGSPGEKGEKGSIGIPGMPGSPGLKGSPGSVGY 1107
Score = 65.5 bits (158), Expect = 6e-11
Identities = 67/228 (29%), Positives = 90/228 (39%), Gaps = 50/228 (21%)
Query: 71 PG-SVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGV 129
PG +P P+ G+ G G G+ G+P GQ P PG KGE GV
Sbjct: 834 PGLDMPGPK------GDKGAQGLPGITGQSGLPGLPGQQGAP----GIPGFPGSKGEMGV 883
Query: 130 PWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWRE 189
G+ P G+ PGEKG+ G P G R G KG+ G+P +
Sbjct: 884 MGTPGQPGSP-GPVGAPGLPGEKGDHGFPGSSG-------PRGDPGLKGDKGDVGLPGKP 935
Query: 190 G-----------GVWRPLERRGSVASPGEKGE------CGVPWREGRVWRPLERRASVAS 232
G G +G + GEKG GVP ++G+ +P
Sbjct: 936 GSMDKVDMGSMKGQKGDQGEKGQIGPIGEKGSRGDPGTPGVPGKDGQAGQP-------GQ 988
Query: 233 PGQKGECGVPWREGAVWRPLDRRGSV------ASPGEKGECGVRWREG 274
PG KG+ G+ GA P +GSV +PGEKG G+ +G
Sbjct: 989 PGPKGDPGISGTPGAPGLP-GPKGSVGGMGLPGTPGEKGVPGIPGPQG 1035
Score = 62.4 bits (150), Expect = 5e-10
Identities = 62/213 (29%), Positives = 85/213 (39%), Gaps = 22/213 (10%)
Query: 67 LSAKPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGE 126
+ PG + P + GE G G G G+P +G V P PG G
Sbjct: 155 MKGDPGEILGHVPGMLLKGERGFPGIPGTPGPPGLPGLQGPVGPP----GFTGPPGPPGP 210
Query: 127 CGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVP 186
G P +G++ L +G G++G G P G ++ + A+ G+KG+ G P
Sbjct: 211 PGPPGEKGQM--GLSFQGPKGDKGDQGVSGPPGVPGQA--QVQEKGDFATKGEKGQKGEP 266
Query: 187 WREG--GVWRPLE-----RRGSVASPGEKGECGVPWREGRVWRP--LERRASVASPGQKG 237
+G GV E RG G+KGE G P G P + R+ G+KG
Sbjct: 267 GFQGMPGVGEKGEPGKPGPRGKPGKDGDKGEKGSPGFPGEPGYPGLIGRQ---GPQGEKG 323
Query: 238 ECGVPWREGAV--WRPLDRRGSVASPGEKGECG 268
E G P G V PL +G PG G G
Sbjct: 324 EAGPPGPPGIVIGTGPLGEKGERGYPGTPGPRG 356
Score = 60.5 bits (145), Expect = 2e-09
Identities = 58/194 (29%), Positives = 80/194 (41%), Gaps = 16/194 (8%)
Query: 85 GEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGRVWRPLDRRG 144
G G AG G G+P +G L + GE+G G+P G P +G
Sbjct: 136 GPPGLPGFAGNPGPPGLPGMKGDPGEILGHVPGMLLKGERGFPGIPGTPGPPGLP-GLQG 194
Query: 145 SVASPGEKGECGVPWREGGVWRPLERRASVASP-GQKGECGVPWREGGVWR-PLERRGSV 202
V PG G G P G + S P G KG+ GV G + ++ +G
Sbjct: 195 PVGPPGFTGPPGPPGPPGPPGEKGQMGLSFQGPKGDKGDQGVSGPPGVPGQAQVQEKGDF 254
Query: 203 ASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWRPLDR--RGSVAS 260
A+ GEKG+ G P +G + G+KGE G P G + D+ +GS
Sbjct: 255 ATKGEKGQKGEPGFQG-----------MPGVGEKGEPGKPGPRGKPGKDGDKGEKGSPGF 303
Query: 261 PGEKGECGVRWREG 274
PGE G G+ R+G
Sbjct: 304 PGEPGYPGLIGRQG 317
Score = 60.1 bits (144), Expect = 2e-09
Identities = 56/204 (27%), Positives = 78/204 (38%), Gaps = 15/204 (7%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVP 130
PG P + R + G G + G +G G+ G P E + G+KG+ G P
Sbjct: 491 PGQ-PGAKGDRGLPGRDGVAGVPGPQGTPGLIGQPGAKGEPGEFYFDLRLKGDKGDPGFP 549
Query: 131 WREGRVWRPLDRRGSVASPGEKGECGVPWREG-----GVWRPLERRASVASPGQKGECGV 185
+ G G SPG G G+P +G G+ V PG +G+ G
Sbjct: 550 GQPGMT-------GRAGSPGRDGHPGLPGPKGSPGSVGLKGERGPPGGVGFPGSRGDTGP 602
Query: 186 PWREG-GVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWR 244
P G G P+ +G PG G G+P +G + + + G G G P
Sbjct: 603 PGPPGYGPAGPIGDKGQAGFPGGPGSPGLPGPKGEPGKIVPLPGPPGAEGLPGSPGFPGP 662
Query: 245 EGAVWRPLDRRGSVASPGEKGECG 268
+G P G PGEKG G
Sbjct: 663 QGDRGFP-GTPGRPGLPGEKGAVG 685
Score = 59.7 bits (143), Expect = 3e-09
Identities = 61/215 (28%), Positives = 83/215 (38%), Gaps = 28/215 (13%)
Query: 67 LSAKPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGE 126
L +PG P P ++ G G GEKG+ G P T + P R PG G
Sbjct: 366 LPGQPGPPGLPVPGQA--GAPGFPGERGEKGDRGFPGTS--LPGPSGRDGLPGPPGSPGP 421
Query: 127 CGVP-WREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGE--- 182
G P + G V PG++G G+P + G + + GQKGE
Sbjct: 422 PGQPGYTNGIV------ECQPGPPGDQGPPGIPGQPGFI-------GEIGEKGQKGESCL 468
Query: 183 -CGVPWREG--GVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGEC 239
C + G G P G PG KG+ G+P R+G P +PG G+
Sbjct: 469 ICDIDGYRGPPGPQGPPGEIGFPGQPGAKGDRGLPGRDGVAGVP----GPQGTPGLIGQP 524
Query: 240 GVPWREGAVWRPLDRRGSVASPGEKGECGVRWREG 274
G G + L +G PG G+ G+ R G
Sbjct: 525 GAKGEPGEFYFDLRLKGDKGDPGFPGQPGMTGRAG 559
Score = 58.2 bits (139), Expect = 9e-09
Identities = 60/192 (31%), Positives = 75/192 (39%), Gaps = 26/192 (13%)
Query: 80 LRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGRVWRP 139
L+ + G G GEKG G+P G+ ++ PG +G G P P
Sbjct: 741 LKGLPGLPGIPGTPGEKGSIGVPGVPGE-------HGAIGPPGLQGIRGEP-------GP 786
Query: 140 LDRRGSVASPGEK--GECGVPWREGGVWRPLERRASVASPGQKGECGVPWREG-GVWRPL 196
GSV SPG G G GG P PG KGE G P G + P
Sbjct: 787 PGLPGSVGSPGVPGIGPPGARGPPGGQGPP----GLSGPPGIKGEKGFPGFPGLDMPGPK 842
Query: 197 ERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWRPLDRRG 256
+G+ PG G+ G+P G+ P PG KGE GV G P G
Sbjct: 843 GDKGAQGLPGITGQSGLPGLPGQQGAP----GIPGFPGSKGEMGVMGTPGQPGSP-GPVG 897
Query: 257 SVASPGEKGECG 268
+ PGEKG+ G
Sbjct: 898 APGLPGEKGDHG 909
Score = 57.4 bits (137), Expect = 2e-08
Identities = 62/199 (31%), Positives = 75/199 (37%), Gaps = 31/199 (15%)
Query: 85 GEAGHSEAAGEKGECGIPWTEGQ--VWRPLERRASVASPGEKGECGVPWREGRVWRPLDR 142
GE G G KG+ G+P +G V P + PG KGE G + + R+
Sbjct: 486 GEIGFPGQPGAKGDRGLPGRDGVAGVPGPQGTPGLIGQPGAKGEPGEFYFDLRLKGDKGD 545
Query: 143 RGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGGVWRPLERRGSV 202
G PG G G P R+G P + S S G KGE G P GGV P RG
Sbjct: 546 PGFPGQPGMTGRAGSPGRDGHPGLP-GPKGSPGSVGLKGERGPP---GGVGFP-GSRGDT 600
Query: 203 ASPG-----------EKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWRP 251
PG +KG+ G P G SPG G G P + + P
Sbjct: 601 GPPGPPGYGPAGPIGDKGQAGFPGGPG-------------SPGLPGPKGEPGKIVPLPGP 647
Query: 252 LDRRGSVASPGEKGECGVR 270
G SPG G G R
Sbjct: 648 PGAEGLPGSPGFPGPQGDR 666
Score = 56.2 bits (134), Expect = 3e-08
Identities = 60/217 (27%), Positives = 83/217 (38%), Gaps = 42/217 (19%)
Query: 94 GEKGECGIPWTEGQVWRPLERRASVASPGEKGECG--VPWREGRVWRPLDR-----RG-- 144
GEKGE G P T G P + PG+ G G VP + G P +R RG
Sbjct: 341 GEKGERGYPGTPGPRGEP-GPKGFPGLPGQPGPPGLPVPGQAGAPGFPGERGEKGDRGFP 399
Query: 145 SVASPGEKGECGVPWREGGVWRPLER-------RASVASPGQKGECGVPWREGGVWRPLE 197
+ PG G G+P G P + PG +G G+P + G +
Sbjct: 400 GTSLPGPSGRDGLPGPPGSPGPPGQPGYTNGIVECQPGPPGDQGPPGIPGQPGFI----- 454
Query: 198 RRGSVASPGEKGEC----------GVPWREGRVWRPLERRASVASPGQKGECGVPWREGA 247
G + G+KGE G P +G P PG KG+ G+P R+G
Sbjct: 455 --GEIGEKGQKGESCLICDIDGYRGPPGPQG----PPGEIGFPGQPGAKGDRGLPGRDGV 508
Query: 248 VWRPLDRRGSVASPGEKGECGVRWREGRVWYSLDKRG 284
P G +PG G+ G + G ++ L +G
Sbjct: 509 AGVP----GPQGTPGLIGQPGAKGEPGEFYFDLRLKG 541
Score = 54.3 bits (129), Expect = 1e-07
Identities = 53/204 (25%), Positives = 79/204 (38%), Gaps = 27/204 (13%)
Query: 84 DGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGRVWRP---- 139
+G G G+ GE G+P T+G P + PG G G+P ++G P
Sbjct: 69 EGPQGPPGQKGDTGEPGLPGTKGTRGPP----GASGYPGNPGLPGIPGQDGPPGPPGIPG 124
Query: 140 ----LDRRGSVASP------GEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWRE 189
RG + P G G G+P +G L + G++G G+P
Sbjct: 125 CNGTKGERGPLGPPGLPGFAGNPGPPGLPGMKGDPGEILGHVPGMLLKGERGFPGIPGTP 184
Query: 190 G-----GVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWR 244
G G+ P+ G PG G G P +G++ L + G +G G P
Sbjct: 185 GPPGLPGLQGPVGPPGFTGPPGPPGPPGPPGEKGQM--GLSFQGPKGDKGDQGVSGPPGV 242
Query: 245 EGAVWRPLDRRGSVASPGEKGECG 268
G + +G A+ GEKG+ G
Sbjct: 243 PGQA--QVQEKGDFATKGEKGQKG 264
Score = 53.5 bits (127), Expect = 2e-07
Identities = 59/197 (29%), Positives = 69/197 (35%), Gaps = 52/197 (26%)
Query: 71 PGS--VPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECG 128
PGS P P+ R G G GEKG G P + PG G G
Sbjct: 654 PGSPGFPGPQGDRGFPGTPGRPGLPGEKGAVGQP--------------GIGFPGPPGPKG 699
Query: 129 VPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWR 188
V G + P G+ PG G G P +G P V PG KG G+P
Sbjct: 700 VDGLPGDMGPP----GTPGRPGFNGLPGNPGVQGQKGEP-----GVGLPGLKGLPGLP-- 748
Query: 189 EGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAV 248
G +PGEKG GVP G ++ PG +G G P G
Sbjct: 749 -----------GIPGTPGEKGSIGVPGVPG-------EHGAIGPPGLQGIRGEPGPPGL- 789
Query: 249 WRPLDRRGSVASPGEKG 265
GSV SPG G
Sbjct: 790 ------PGSVGSPGVPG 800
Score = 50.4 bits (119), Expect = 2e-06
Identities = 53/189 (28%), Positives = 76/189 (40%), Gaps = 19/189 (10%)
Query: 94 GEKGECGIPWTEGQVWRPLER--RASVASPGEK---GECGVPWREGRVWRPLDRRGSVAS 148
G+KGE G+P +G + P + PG+K GE G+P +G P G+
Sbjct: 46 GQKGERGLPGLQGVIGFPGMQGPEGPQGPPGQKGDTGEPGLPGTKGTRGPP----GASGY 101
Query: 149 PGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGGVWRPLERRGSVASPGEK 208
PG G G+P ++G P + + G++G G P G P G PG K
Sbjct: 102 PGNPGLPGIPGQDGPPGPPGIPGCN-GTKGERGPLGPPGLPGFAGNP----GPPGLPGMK 156
Query: 209 GECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAV-----WRPLDRRGSVASPGE 263
G+ G R PG G G+P +G V P G PGE
Sbjct: 157 GDPGEILGHVPGMLLKGERGFPGIPGTPGPPGLPGLQGPVGPPGFTGPPGPPGPPGPPGE 216
Query: 264 KGECGVRWR 272
KG+ G+ ++
Sbjct: 217 KGQMGLSFQ 225
Score = 47.4 bits (111), Expect = 2e-05
Identities = 63/208 (30%), Positives = 79/208 (37%), Gaps = 33/208 (15%)
Query: 67 LSAKPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEG----QVWRPLERRASV-ASP 121
L PG + P L IDG G G G G+P +G Q + + S
Sbjct: 1246 LPGLPGPM-GPPGLPGIDGVKGDKGNPGWPGAPGVPGPKGDPGFQGMPGIGGSPGITGSK 1304
Query: 122 GEKGECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQ-- 179
G+ G GVP +G P G G++G+ GVP +G P PG
Sbjct: 1305 GDMGPPGVPGFQG----PKGLPGLQGIKGDQGDQGVPGAKGLPGPP-------GPPGPYD 1353
Query: 180 --KGECGVPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKG 237
KGE G+P EG P +G PG KG+ GV G + P +PGQKG
Sbjct: 1354 IIKGEPGLPGPEG----PPGLKGLQGLPGPKGQQGVTGLVG-IPGPPGIPGFDGAPGQKG 1408
Query: 238 ECGVPWREGAVWRPLDRRGSVASPGEKG 265
E G P RG PG G
Sbjct: 1409 EMGPA-------GPTGPRGFPGPPGPDG 1429
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 72.0 bits (175), Expect = 6e-13
Identities = 68/216 (31%), Positives = 87/216 (40%), Gaps = 28/216 (12%)
Query: 67 LSAKPGS-----VPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASP 121
L+ +PG +P LR GE G + GEKGE G+P G R
Sbjct: 248 LNGEPGERGEDGLPGKPGLRGEIGEQGLAGRPGEKGEAGLPGAPGFP----GVRGEKGDQ 303
Query: 122 GEKGECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASP-GQK 180
GEKGE G+P +G RG G G G+P ++ P R P G+K
Sbjct: 304 GEKGELGLPGLKG-------DRGEKGEAGPAGPPGLPGTT-SLFTPHPRMPGEQGPKGEK 355
Query: 181 GECGVPWREGGVWRP--LERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGE 238
G+ G+P G RP L +G PG KG+ G G P +PG G
Sbjct: 356 GDPGLPGEPGLQGRPGELGPQGPTGPPGAKGQEGAHGAPGAAGNP-------GAPGHVGA 408
Query: 239 CGVPWREGAVWRPLDRRGSVASPGEKGECGVRWREG 274
G G+V P RG+ GE+GE G EG
Sbjct: 409 PGPSGPPGSVGAP-GLRGTPGKDGERGEKGAAGEEG 443
Score = 67.0 bits (162), Expect = 2e-11
Identities = 69/233 (29%), Positives = 92/233 (39%), Gaps = 47/233 (20%)
Query: 68 SAKPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRP--LERRASVASPGEKG 125
S PG +P DG+ G G+ GE G+P EG P +PG +G
Sbjct: 680 SGLPG-IPGEEGKEGRDGKPGPPGEPGKAGEPGLPGPEGARGPPGFKGHTGDSGAPGPRG 738
Query: 126 ECG---VPWREGRVWR-----------------PLDRRGSVASPGEKGECGVPWREG--- 162
E G +P +EG + P + GS SPGE G G P ++G
Sbjct: 739 ESGAMGLPGQEGLPGKDGDTGPTGPQGPQGPRGPPGKNGSPGSPGEPGPSGTPGQKGSKG 798
Query: 163 -----GVWRPLERRASVASPGQKGECGVPWREGGVWRPLER--RGSVASPGEKGECGVPW 215
G+ L R PG+ GE GVP +EG +P E +G PG KG+ G P
Sbjct: 799 ENGSPGLPGFLGPR---GPPGEPGEKGVPGKEGVPGKPGEPGFKGERGDPGIKGDKGPPG 855
Query: 216 REGRVWRPLERRASVASPGQKGECGVPWREGAVWRPLDRRGSVASPGEKGECG 268
+G+ P PG KG G+ +G G V PG G+ G
Sbjct: 856 GKGQPGDP-------GIPGHKGHTGLMGPQGLP----GENGPVGPPGPPGQPG 897
Score = 65.1 bits (157), Expect = 7e-11
Identities = 70/259 (27%), Positives = 97/259 (37%), Gaps = 58/259 (22%)
Query: 69 AKPGSVPAPRPL---RSIDGEAGHSEAAGEKGECGIPWTEGQVWRP-------LERRASV 118
A P +P P + + GE G G+KG+ G P G + P + A
Sbjct: 599 AGPPGLPGPPGIAGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGIAGA 658
Query: 119 ASP----------------GEKGECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREG 162
A P G G G+P EG+ R + G PG+ GE G+P EG
Sbjct: 659 AGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRD-GKPGPPGEPGKAGEPGLPGPEG 717
Query: 163 GVWRP--LERRASVASPGQKGE---CGVPWREG-----------------GVWRPLERRG 200
P +PG +GE G+P +EG G P + G
Sbjct: 718 ARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPTGPQGPQGPRGPPGKNG 777
Query: 201 SVASPGEKGECGVPWREGRVWRPLER-----RASVASPGQKGECGVPWREGAVWRPLDRR 255
S SPGE G G P ++G PG+ GE GVP +EG +P
Sbjct: 778 SPGSPGEPGPSGTPGQKGSKGENGSPGLPGFLGPRGPPGEPGEKGVPGKEGVPGKP---- 833
Query: 256 GSVASPGEKGECGVRWREG 274
G GE+G+ G++ +G
Sbjct: 834 GEPGFKGERGDPGIKGDKG 852
Score = 59.7 bits (143), Expect = 3e-09
Identities = 70/237 (29%), Positives = 86/237 (36%), Gaps = 42/237 (17%)
Query: 68 SAKPGSVPAP--RPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRP-LERRASVASPGEK 124
S PGSV AP R DGE G AAGE+G G G P L GE
Sbjct: 412 SGPPGSVGAPGLRGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPPGKGKDGEP 471
Query: 125 GECGVPWREGRVWRPLDR--RGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGE 182
G G P G + DR G SPG +G+ G+ G P SPG +G
Sbjct: 472 GLRGSPGLPGPLGTKGDRGAPGIPGSPGSRGDPGI--GVAGPPGPSGPPGDKGSPGSRGL 529
Query: 183 CGVPWREGGVWR-----------------------PLERRGSVASPGEKGECGVPWREGR 219
G P +G R P G PG KG+ GVP + GR
Sbjct: 530 PGFPGPQGPAGRDGLSSLLSPGDINLLAKDVCNDCPPGPPGLPGLPGFKGDKGVPGKPGR 589
Query: 220 VWRPLERRASVASPGQKGECGVPWREG--AVWRPLDRRGSVASPGEKGECGVRWREG 274
+ G+KGE G P G + P +G + GE G+ G + G
Sbjct: 590 ----------EGTEGKKGEAGPPGLPGPPGIAGPQGSQGERGADGEVGQKGDQGHPG 636
Score = 40.8 bits (94), Expect = 0.002
Identities = 55/228 (24%), Positives = 77/228 (33%), Gaps = 65/228 (28%)
Query: 83 IDGEAGHSEAAGEKGECGIPWTEGQVWR------PLERRASVASPGEKGECGVPWREGR- 135
I G+ G G+ G+ GIP +G P E V PG G+ G P G
Sbjct: 847 IKGDKGPPGGKGQPGDPGIPGHKGHTGLMGPQGLPGEN-GPVGPPGPPGQPGFPGLRGES 905
Query: 136 -------------VWRPLDRR-----------------GSVASPGEKGECGVPWREGGVW 165
+ + L+ R G PG G+ G+P R G
Sbjct: 906 PSMETLRRLIQEELGKQLETRLAYLLAQMPPAYMKSSQGRPGPPGPPGKDGLPGRAG--- 962
Query: 166 RPLERRASVASPGQKGECGVPWREGGVWRPLERRGSVASPGE-----KGECGVPWREGRV 220
+ PG+ G+ G+ G + P RG+ PG +GE G P G+
Sbjct: 963 -------PMGEPGRPGQGGLEGPSGPI-GPKGERGAKGDPGAPGVGLRGEMGPPGIPGQP 1014
Query: 221 WRPLERRASVAS-PGQKGECGVPWREGAVWRPLDRRGSVASPGEKGEC 267
P + + PG +GE G P G PG G+C
Sbjct: 1015 GEPGYAKDGLPGIPGPQGETG----------PAGHPGLPGPPGPPGQC 1052
>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
Length = 1714
Score = 71.6 bits (174), Expect = 8e-13
Identities = 61/215 (28%), Positives = 83/215 (38%), Gaps = 35/215 (16%)
Query: 71 PGSV--PAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECG 128
PG + P+ R G GH G GE GIP G +P PG KGE G
Sbjct: 1136 PGKIGKSGPKGARGTRGAVGHLGLMGPDGEPGIPGYRGHQGQP----GPSGLPGPKGEKG 1191
Query: 129 VPWREGRVWRPLDRRGSVASPGEKGECGVPWREG--------GVWRPLERRASVASPGQK 180
P + V P RG G++GE G P EG G+ ++ PG +
Sbjct: 1192 YPGEDSTVLGPPGPRGEPGPVGDQGERGEPGAEGYKGHVGVPGLRGATGQQGPPGEPGDQ 1251
Query: 181 GECGVPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECG 240
GE G+ G +G +PG G+ G+P +G + G KG G
Sbjct: 1252 GEQGLKGERGSE----GNKGKKGAPGPSGKPGIPGLQGLL-------------GPKGIQG 1294
Query: 241 VPWREGAVWRPLDRRGSVASPGEKGECGVRWREGR 275
+G P G + PG++G G+R GR
Sbjct: 1295 YHGADGISGNP----GKIGPPGKQGLPGIRGGPGR 1325
Score = 70.1 bits (170), Expect = 2e-12
Identities = 65/209 (31%), Positives = 81/209 (38%), Gaps = 34/209 (16%)
Query: 85 GEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGRVWRPLDR-- 142
GE G A GEKG+ G G + + +PGE+G G P +G DR
Sbjct: 936 GEQGIQGAKGEKGDQGKRGPHGLIGK-------TGNPGERGFQGKPGLQGLPGSTGDRGL 988
Query: 143 ---------RGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGGVW 193
+G V PGE G G P EG PG KG+ G GG
Sbjct: 989 PGEPGLRGLQGDVGPPGEMGMEGPPGTEG-------ESGLQGEPGAKGDVGTAGSVGGTG 1041
Query: 194 RPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWRPLD 253
P G PG GE G+ ++G P R G+KGE G+P G PL
Sbjct: 1042 EP----GLRGEPGAPGEEGLQGKDGLKGVP-GGRGLPGEDGEKGEMGLPGIIG----PLG 1092
Query: 254 RRGSVASPGEKGECGVRWREGRVWYSLDK 282
R G PG +G G+ + GR DK
Sbjct: 1093 RSGQTGLPGPEGIVGIPGQRGRPGKKGDK 1121
Score = 67.0 bits (162), Expect = 2e-11
Identities = 65/213 (30%), Positives = 84/213 (39%), Gaps = 44/213 (20%)
Query: 67 LSAKPGS-----VPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASP 121
L PGS +P LR + G+ G GE G G P TEG+ P
Sbjct: 976 LQGLPGSTGDRGLPGEPGLRGLQGDVG---PPGEMGMEGPPGTEGE-------SGLQGEP 1025
Query: 122 GEKGECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKG 181
G KG+ G G P G PG GE G+ ++G P R G+KG
Sbjct: 1026 GAKGDVGTAGSVGGTGEP----GLRGEPGAPGEEGLQGKDGLKGVP-GGRGLPGEDGEKG 1080
Query: 182 ECGVPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGV 241
E G+P G+ PL R G PG +G G+P + GR PG+KG+ G
Sbjct: 1081 EMGLP----GIIGPLGRSGQTGLPGPEGIVGIPGQRGR-------------PGKKGDKGQ 1123
Query: 242 PWREGAVWRPLDRRGSVASPGEKGECGVRWREG 274
G V GS PG+ G+ G + G
Sbjct: 1124 IGPTGEV-------GSRGPPGKIGKSGPKGARG 1149
Score = 64.7 bits (156), Expect = 1e-10
Identities = 62/226 (27%), Positives = 86/226 (38%), Gaps = 34/226 (15%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRAS---VASPGEKGEC 127
P P R G+ G S G KGE G P + V P R V GE+GE
Sbjct: 1162 PDGEPGIPGYRGHQGQPGPSGLPGPKGEKGYPGEDSTVLGPPGPRGEPGPVGDQGERGEP 1221
Query: 128 GVPWREGRVWRP-----LDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGE 182
G +G V P ++G PG++GE G+ G + +PG G+
Sbjct: 1222 GAEGYKGHVGVPGLRGATGQQGPPGEPGDQGEQGLKGERGSE----GNKGKKGAPGPSGK 1277
Query: 183 CGVPWREG-----------GVWRPLERRGSVASPGEKGECGV---PWREGRVWRPLERRA 228
G+P +G G G + PG++G G+ P R G P
Sbjct: 1278 PGIPGLQGLLGPKGIQGYHGADGISGNPGKIGPPGKQGLPGIRGGPGRTGLAGAP----- 1332
Query: 229 SVASPGQKGECGVPWREGAVWRPLDRRGSVASPGEKGECGVRWREG 274
PG KG G+P G + P +G PG +G+ G R +G
Sbjct: 1333 --GPPGVKGSSGLPGSPG-IQGPKGEQGLPGQPGIQGKRGHRGAQG 1375
Score = 59.3 bits (142), Expect = 4e-09
Identities = 62/211 (29%), Positives = 85/211 (40%), Gaps = 38/211 (18%)
Query: 71 PGSVPAP------RPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEK 124
P +P P + L I G+ G AGE GE G P +G V P PG +
Sbjct: 694 PAGIPGPMGLSGNKGLPGIKGDKGEQGTAGELGEPGYPGDKGAVGLP-------GPPGMR 746
Query: 125 GECGVPWREGRVWRPLDRRGSVASPGEK---GECGVPWREG--GVWRPLERRASVASPGQ 179
G+ G + G +G PG + G+ G+P + G G L R PG
Sbjct: 747 GKSGPSGQTG----DPGLQGPSGPPGPEGFPGDIGIPGQNGPEGPKGLLGNRGPPGPPGL 802
Query: 180 KGECGVPWREG--GVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKG 237
KG G EG G + L RG PG+KG G P EG + + + ++ G+ G
Sbjct: 803 KGTQG---EEGPIGAFGELGPRG---KPGQKGYAGEPGPEG-LKGEVGDQGNIGKIGETG 855
Query: 238 ECGVPWREGAVWRPLDRRGSVASPGEKGECG 268
G+P G GS+ GE+G G
Sbjct: 856 PVGLPGEVGMT-------GSIGEKGERGSPG 879
Score = 55.5 bits (132), Expect = 6e-08
Identities = 62/208 (29%), Positives = 78/208 (37%), Gaps = 37/208 (17%)
Query: 77 PRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGRV 136
P ++ G GH G GE GIP G ++ SPG G G+ EG
Sbjct: 562 PPGMQGDKGLKGHPGLPGLPGEQGIPGFAG----------NIGSPGYPGRQGLAGPEGNP 611
Query: 137 WRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREG--GVWR 194
P +G + SPGE G+ G P E G+ PG +G+ G R+G G +
Sbjct: 612 -GPKGAQGFIGSPGEAGQLG-PEGERGI------------PGIRGKKGFKGRQGFPGDFG 657
Query: 195 PLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWRPLDR 254
G SPG G G P G R SV G G G+P G
Sbjct: 658 DRGPAGLDGSPGLVGGTGPPGFPG-------LRGSVGPVGPIGPAGIPGPMGL----SGN 706
Query: 255 RGSVASPGEKGECGVRWREGRVWYSLDK 282
+G G+KGE G G Y DK
Sbjct: 707 KGLPGIKGDKGEQGTAGELGEPGYPGDK 734
Score = 51.6 bits (122), Expect = 9e-07
Identities = 57/214 (26%), Positives = 83/214 (38%), Gaps = 12/214 (5%)
Query: 69 AKPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECG 128
A P P P+ + G G + G +GE GIP G+ R+ G++G G
Sbjct: 605 AGPEGNPGPKGAQGFIGSPGEAGQLGPEGERGIPGIRGKKGFK-GRQGFPGDFGDRGPAG 663
Query: 129 VPWREGRVWRPLDRRGSVASPGEKGECGV--PWREGGVWRPLERRASVASPGQKGECGVP 186
+ G V G PG +G G P G+ P+ + PG KG+ G
Sbjct: 664 LDGSPGLV----GGTGPPGFPGLRGSVGPVGPIGPAGIPGPMGLSGNKGLPGIKGDKGEQ 719
Query: 187 WREGGVWRP--LERRGSVASPGEKGECGVPWREGRVWRP-LERRASVASP-GQKGECGVP 242
G + P +G+V PG G G G+ P L+ + P G G+ G+P
Sbjct: 720 GTAGELGEPGYPGDKGAVGLPGPPGMRGKSGPSGQTGDPGLQGPSGPPGPEGFPGDIGIP 779
Query: 243 WREGAVWRPLDRRGSVASPGEKGECGVRWREGRV 276
+ G P G+ PG G G + EG +
Sbjct: 780 GQNGPE-GPKGLLGNRGPPGPPGLKGTQGEEGPI 812
Score = 40.4 bits (93), Expect = 0.002
Identities = 39/145 (26%), Positives = 55/145 (37%), Gaps = 28/145 (19%)
Query: 83 IDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGRVWRPLDR 142
I G+ GH A G++G CG P +GQ PGE G G+ +G
Sbjct: 1364 IQGKRGHRGAQGDQGPCGDPGLKGQ-------------PGEYGVQGLTGFQG-------F 1403
Query: 143 RGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGGVWRPLERRGSV 202
G G+ G G+ +G P+ R + G++G G R G P +G
Sbjct: 1404 PGPKGPEGDAGIVGISGPKG----PIGHRGNTGPLGREGIIGPTGRTG----PRGEKGFR 1455
Query: 203 ASPGEKGECGVPWREGRVWRPLERR 227
G +G G P G P R+
Sbjct: 1456 GETGPQGPRGQPGPPGPPGAPGPRK 1480
Score = 33.5 bits (75), Expect = 0.24
Identities = 31/105 (29%), Positives = 43/105 (40%), Gaps = 6/105 (5%)
Query: 178 GQKGECGVPWREG--GVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVAS--P 233
G KG+ G P G G+ P +RG PG G G+P G + S P
Sbjct: 489 GPKGDTGPPGPPGPAGIPGPSGKRGPRGIPGPHGNPGLPGLPGPKGPKGDPGFSPGQPVP 548
Query: 234 GQKGECGVPWREGAVWRPLDR--RGSVASPGEKGECGVRWREGRV 276
G+KG+ G+ G D+ +G PG GE G+ G +
Sbjct: 549 GEKGDQGLSGLMGPPGMQGDKGLKGHPGLPGLPGEQGIPGFAGNI 593
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 70.9 bits (172), Expect = 1e-12
Identities = 66/219 (30%), Positives = 86/219 (39%), Gaps = 27/219 (12%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVP 130
P P PR ++ DG G + GEKGE G P +G + + R V G +GE G
Sbjct: 767 PIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGD-RGEVGQIGPRGEDGPE 825
Query: 131 WREGRVWRPLDRRGSVASPGEKGECGVPWREG--GVWRPLERRASVASPGQKGECGV--- 185
+GR P G GEKG+ GVP G G P PG GE G
Sbjct: 826 GPKGRA-GPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGV 884
Query: 186 -----PWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLER-----RASVASPGQ 235
P + G P RG+ G+ G G +G P ER + V PG
Sbjct: 885 AGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGP 944
Query: 236 KGECGVPWREGAVWRPLDRRGSVASPGEKGECGVRWREG 274
KG G P ++G PG++GE G + + G
Sbjct: 945 KGPPGPPGKDGL----------PGHPGQRGETGFQGKTG 973
Score = 63.9 bits (154), Expect = 2e-10
Identities = 59/192 (30%), Positives = 75/192 (39%), Gaps = 28/192 (14%)
Query: 85 GEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGRVWRPLDRR- 143
GE GH G GE G+P G + + PG +G G G P +R
Sbjct: 994 GERGHPGPPGPPGEQGLPGAAG-------KEGAKGDPGPQGISGKDGPAGLRGFPGERGL 1046
Query: 144 -GSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGGVWRPLERRGSV 202
G+ +PG KG G G V P ER S G G G+P R G P G
Sbjct: 1047 PGAQGAPGLKGGEGPQGPPGPVGSPGER----GSAGTAGPIGLPGRPGPQGPP-GPAGEK 1101
Query: 203 ASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWRPLDRRGSVASPG 262
+PGEKG G R+G + V PG G G P +G +G + PG
Sbjct: 1102 GAPGEKGPQGPAGRDGV-------QGPVGLPGPAGPAGSPGEDGD-------KGEIGEPG 1147
Query: 263 EKGECGVRWREG 274
+KG G + G
Sbjct: 1148 QKGSKGDKGENG 1159
Score = 62.8 bits (151), Expect = 4e-10
Identities = 58/196 (29%), Positives = 71/196 (36%), Gaps = 54/196 (27%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVP 130
P P P LR I G G G G+ G P G P PG KGE G P
Sbjct: 1412 PAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLP----GLKGDPGSKGEKGHP 1467
Query: 131 WREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREG 190
G + P ++ GEKG+ G+P +G SPG KG+ G+P G
Sbjct: 1468 GLIGLIGPPGEQ-------GEKGDRGLPGTQG-------------SPGAKGDGGIPGPAG 1507
Query: 191 GVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWR 250
PL G PG +G P + S GQKG+ G+P
Sbjct: 1508 ----PLGPPGPPGLPGPQG-------------PKGNKGSTGPAGQKGDSGLP-------- 1542
Query: 251 PLDRRGSVASPGEKGE 266
G SPG GE
Sbjct: 1543 -----GPPGSPGPPGE 1553
Score = 62.4 bits (150), Expect = 5e-10
Identities = 61/205 (29%), Positives = 79/205 (38%), Gaps = 41/205 (20%)
Query: 75 PAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWR--PLERRASVASPGEKGECGVPWR 132
P P R G AG GEKG G EG + P+ + PG +G G+P
Sbjct: 1368 PGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGP 1427
Query: 133 EGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGGV 192
G P G PG G G+P +G PG KGE G P G +
Sbjct: 1428 VGEQGLP-GAAGQDGPPGPMGPPGLPGLKG-------------DPGSKGEKGHPGLIGLI 1473
Query: 193 WRPLERR--------GSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWR 244
P E+ G+ SPG KG+ G+P G PL G G G+P
Sbjct: 1474 GPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAG----PL---------GPPGPPGLPGP 1520
Query: 245 EGAVWRPLDRRGSVASPGEKGECGV 269
+G P +GS G+KG+ G+
Sbjct: 1521 QG----PKGNKGSTGPAGQKGDSGL 1541
Score = 62.0 bits (149), Expect = 6e-10
Identities = 70/225 (31%), Positives = 85/225 (37%), Gaps = 28/225 (12%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAA---GEKGECGIPWTEGQVWRPLER--------RASVA 119
P P L DG GH GEKG G P +G + P R R
Sbjct: 728 PQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKG 787
Query: 120 SPGEKGECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQ 179
S GEKGE G P +G + D RG V G +GE G P G P G+
Sbjct: 788 SKGEKGEDGFPGFKGDMGLKGD-RGEVGQIGPRGEDG-PEGPKGRAGPTGDPGPSGQAGE 845
Query: 180 KGECGVPWREGGVWRPLERRGSVASP------GEKGECGVPWREGRVWRPLERRASVASP 233
KG+ GVP G R +GS P GEKG GV + G P +R
Sbjct: 846 KGKLGVPGLPGYPGRQ-GPKGSTGFPGFPGANGEKGARGVAGKPG----PRGQRGPTGPR 900
Query: 234 GQKGECGVPWREGAVWRPLDRRGSVASPGEKGECGVRWREGRVWY 278
G +G G + G P G PG GE G + +G V +
Sbjct: 901 GSRGARGPTGKPG----PKGTSGGDGPPGPPGERGPQGPQGPVGF 941
Score = 60.8 bits (146), Expect = 1e-09
Identities = 63/222 (28%), Positives = 82/222 (36%), Gaps = 33/222 (14%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWR--------PLERRASVASPG 122
P P P + G G G +G+ G P G V P+ R PG
Sbjct: 944 PKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPG 1003
Query: 123 EKGECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGE 182
GE G+P G+ G+ PG +G G G P ER PG +G
Sbjct: 1004 PPGEQGLPGAAGK-------EGAKGDPGPQGISGKDGPAGLRGFPGER----GLPGAQGA 1052
Query: 183 CGVPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLER-----RASVASPGQKG 237
G+ EG P G V SPGE+G G G RP + +PG+KG
Sbjct: 1053 PGLKGGEGPQGPP----GPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKG 1108
Query: 238 ECGVPWREG-----AVWRPLDRRGSVASPGEKGECGVRWREG 274
G R+G + P GS G+KGE G ++G
Sbjct: 1109 PQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKG 1150
Score = 59.7 bits (143), Expect = 3e-09
Identities = 64/212 (30%), Positives = 78/212 (36%), Gaps = 39/212 (18%)
Query: 75 PAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREG 134
P PR R G G A G G+ G T G P PGE+G
Sbjct: 888 PGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPP-------GPPGERG--------- 931
Query: 135 RVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLER-----RASVASPGQKGECGVPWRE 189
P +G V PG KG G P ++G P +R + PG G G P
Sbjct: 932 ----PQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVG-PQGP 986
Query: 190 GGVWRPLERRGSVASPGEKGECGVP---WREGRVWRPLERRAS-----VASPGQKGECGV 241
G P+ RG PG GE G+P +EG P + S G GE G+
Sbjct: 987 TGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGL 1046
Query: 242 PWREGAVW-----RPLDRRGSVASPGEKGECG 268
P +GA P G V SPGE+G G
Sbjct: 1047 PGAQGAPGLKGGEGPQGPPGPVGSPGERGSAG 1078
Score = 59.3 bits (142), Expect = 4e-09
Identities = 64/213 (30%), Positives = 80/213 (37%), Gaps = 18/213 (8%)
Query: 74 VPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWRE 133
V P+ R GEAG AAG G G P +G P V PG+ G G P
Sbjct: 1283 VGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNP----GPVGFPGDPGPPGEPGPA 1338
Query: 134 GRVWRPLDR-----RGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWR 188
G+ D+ G PG GE G P G P A G+KG G
Sbjct: 1339 GQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAE-GRQGEKGAKGEAGA 1397
Query: 189 EG--GVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREG 246
EG G P+ +G PG +G G+P G P PG G G+P +G
Sbjct: 1398 EGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLP-GAAGQDGPPGPMGPPGLPGLKG 1456
Query: 247 AVWRPLDRR-----GSVASPGEKGECGVRWREG 274
++ G + PGE+GE G R G
Sbjct: 1457 DPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPG 1489
Score = 55.5 bits (132), Expect = 6e-08
Identities = 63/212 (29%), Positives = 82/212 (38%), Gaps = 31/212 (14%)
Query: 68 SAKPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGEC 127
+A P +P + G AG A GEKG G +G + V PG G
Sbjct: 1079 TAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGV-------QGPVGLPGPAGPA 1131
Query: 128 GVPWREG---RVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECG 184
G P +G + P ++GS GE G G P +G V P PG +G+ G
Sbjct: 1132 GSPGEDGDKGEIGEP-GQKGSKGDKGENGPPGPPGLQGPVGAP-GIAGGDGEPGPRGQQG 1189
Query: 185 VPWREG--------GVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQK 236
+ ++G G P+ +G PGEKGE G G P R G +
Sbjct: 1190 MFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPR-------GPQ 1242
Query: 237 GECGVPWREGAVWRPLDRRGSVASPGEKGECG 268
G G +G P GSV GEKGE G
Sbjct: 1243 GPNGADGPQG----PPGSVGSVGGVGEKGEPG 1270
Score = 55.1 bits (131), Expect = 8e-08
Identities = 64/236 (27%), Positives = 85/236 (36%), Gaps = 40/236 (16%)
Query: 75 PAPRPLRSIDGEAGHSEAAGEKGECGIPWTE---------GQVWRPLERRASVAS----- 120
P P L G G ++G KGE G P + G +P +R A
Sbjct: 543 PGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGM 602
Query: 121 PGEKGECGVPWREGRVWRPLDR-----RGSVASPGEKGECGVPWREG-----------GV 164
PGE G G +G P D+ RG PG G+ G+ +G G
Sbjct: 603 PGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGP 662
Query: 165 WRPLERRASVASPGQKGECGVPWREG--GVWRPLERRGSVASPGEKGECGVPWREGRVWR 222
L R + +PGQ G GV G G P G G G G+P +G +
Sbjct: 663 RGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGP 722
Query: 223 PLERRASVASPGQKGECGVPWREGAVWRPLDRRGSVASPGEKGECGVRWREGRVWY 278
P E+ G+ G G+P +G P G GEKG G +G + Y
Sbjct: 723 PGEK----GPQGKPGLAGLPGADGPPGHP----GKEGQSGEKGALGPPGPQGPIGY 770
Score = 50.8 bits (120), Expect = 1e-06
Identities = 64/221 (28%), Positives = 75/221 (33%), Gaps = 37/221 (16%)
Query: 75 PAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREG 134
P PR G+ G G++G G P G P+ + PGEKGE G G
Sbjct: 1182 PGPR------GQQGMFGQKGDEGARGFPGPPG----PIGLQGLPGPPGEKGENGDVGPMG 1231
Query: 135 RVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGGVWR 194
P RG G G G P G V E+ PG+ G G P E GV
Sbjct: 1232 PPGPP-GPRGPQGPNGADGPQGPPGSVGSVGGVGEK----GEPGEAGNPGPPG-EAGVGG 1285
Query: 195 PLERRGSVASPGEKGECGVPWREGRVW--RPLERRASVASP------------------G 234
P RG G G G P +G P V P G
Sbjct: 1286 PKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGG 1345
Query: 235 QKGECGVPWREGAVWRPLDRRGSVASPGEKGECGVRWREGR 275
KGE G P + G P G PG++G G EGR
Sbjct: 1346 DKGEDGDPGQPGPP-GPSGEAGPPGPPGKRGPPGAAGAEGR 1385
Score = 30.0 bits (66), Expect = 2.7
Identities = 39/168 (23%), Positives = 60/168 (35%), Gaps = 26/168 (15%)
Query: 53 DQMGSVEKLTTSAFLSAKPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPL 112
+++ + E LT + S + S + IDG G+ GE + +P
Sbjct: 347 EEIFTEEYLTGEDYDSQRKNSEDTLYENKEIDGRDSDLLVDGDLGEYDFYEYKEYEDKP- 405
Query: 113 ERRASVASPGEKGECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRA 172
+ P E+ GVP ++ G+ G+KGE
Sbjct: 406 -----TSPPNEEFGPGVPAETDITETSINGHGAYGEKGQKGE-----------------P 443
Query: 173 SVASPGQKGECGVPWREG--GVWRPLERRGSVASPGEKGECGVPWREG 218
+V PG E G P G G+ P +G PG+ G+ G P R G
Sbjct: 444 AVVEPGMLVE-GPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPG 490
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 70.9 bits (172), Expect = 1e-12
Identities = 66/219 (30%), Positives = 86/219 (39%), Gaps = 27/219 (12%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVP 130
P P PR ++ DG G + GEKGE G P +G + + R V G +GE G
Sbjct: 716 PIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGD-RGEVGQIGPRGEDGPE 774
Query: 131 WREGRVWRPLDRRGSVASPGEKGECGVPWREG--GVWRPLERRASVASPGQKGECGV--- 185
+GR P G GEKG+ GVP G G P PG GE G
Sbjct: 775 GPKGRA-GPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGV 833
Query: 186 -----PWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLER-----RASVASPGQ 235
P + G P RG+ G+ G G +G P ER + V PG
Sbjct: 834 AGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGP 893
Query: 236 KGECGVPWREGAVWRPLDRRGSVASPGEKGECGVRWREG 274
KG G P ++G PG++GE G + + G
Sbjct: 894 KGPPGPPGKDGL----------PGHPGQRGETGFQGKTG 922
Score = 63.9 bits (154), Expect = 2e-10
Identities = 59/192 (30%), Positives = 75/192 (39%), Gaps = 28/192 (14%)
Query: 85 GEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGRVWRPLDRR- 143
GE GH G GE G+P G + + PG +G G G P +R
Sbjct: 943 GERGHPGPPGPPGEQGLPGAAG-------KEGAKGDPGPQGISGKDGPAGLRGFPGERGL 995
Query: 144 -GSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGGVWRPLERRGSV 202
G+ +PG KG G G V P ER S G G G+P R G P G
Sbjct: 996 PGAQGAPGLKGGEGPQGPPGPVGSPGER----GSAGTAGPIGLPGRPGPQGPP-GPAGEK 1050
Query: 203 ASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWRPLDRRGSVASPG 262
+PGEKG G R+G + V PG G G P +G +G + PG
Sbjct: 1051 GAPGEKGPQGPAGRDGV-------QGPVGLPGPAGPAGSPGEDGD-------KGEIGEPG 1096
Query: 263 EKGECGVRWREG 274
+KG G + G
Sbjct: 1097 QKGSKGDKGENG 1108
Score = 62.8 bits (151), Expect = 4e-10
Identities = 58/196 (29%), Positives = 71/196 (36%), Gaps = 54/196 (27%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVP 130
P P P LR I G G G G+ G P G P PG KGE G P
Sbjct: 1361 PAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLP----GLKGDPGSKGEKGHP 1416
Query: 131 WREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREG 190
G + P ++ GEKG+ G+P +G SPG KG+ G+P G
Sbjct: 1417 GLIGLIGPPGEQ-------GEKGDRGLPGTQG-------------SPGAKGDGGIPGPAG 1456
Query: 191 GVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWR 250
PL G PG +G P + S GQKG+ G+P
Sbjct: 1457 ----PLGPPGPPGLPGPQG-------------PKGNKGSTGPAGQKGDSGLP-------- 1491
Query: 251 PLDRRGSVASPGEKGE 266
G SPG GE
Sbjct: 1492 -----GPPGSPGPPGE 1502
Score = 62.4 bits (150), Expect = 5e-10
Identities = 61/205 (29%), Positives = 79/205 (38%), Gaps = 41/205 (20%)
Query: 75 PAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWR--PLERRASVASPGEKGECGVPWR 132
P P R G AG GEKG G EG + P+ + PG +G G+P
Sbjct: 1317 PGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGP 1376
Query: 133 EGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGGV 192
G P G PG G G+P +G PG KGE G P G +
Sbjct: 1377 VGEQGLP-GAAGQDGPPGPMGPPGLPGLKG-------------DPGSKGEKGHPGLIGLI 1422
Query: 193 WRPLERR--------GSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWR 244
P E+ G+ SPG KG+ G+P G PL G G G+P
Sbjct: 1423 GPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAG----PL---------GPPGPPGLPGP 1469
Query: 245 EGAVWRPLDRRGSVASPGEKGECGV 269
+G P +GS G+KG+ G+
Sbjct: 1470 QG----PKGNKGSTGPAGQKGDSGL 1490
Score = 62.0 bits (149), Expect = 6e-10
Identities = 70/225 (31%), Positives = 85/225 (37%), Gaps = 28/225 (12%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAA---GEKGECGIPWTEGQVWRPLER--------RASVA 119
P P L DG GH GEKG G P +G + P R R
Sbjct: 677 PQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKG 736
Query: 120 SPGEKGECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQ 179
S GEKGE G P +G + D RG V G +GE G P G P G+
Sbjct: 737 SKGEKGEDGFPGFKGDMGLKGD-RGEVGQIGPRGEDG-PEGPKGRAGPTGDPGPSGQAGE 794
Query: 180 KGECGVPWREGGVWRPLERRGSVASP------GEKGECGVPWREGRVWRPLERRASVASP 233
KG+ GVP G R +GS P GEKG GV + G P +R
Sbjct: 795 KGKLGVPGLPGYPGRQ-GPKGSTGFPGFPGANGEKGARGVAGKPG----PRGQRGPTGPR 849
Query: 234 GQKGECGVPWREGAVWRPLDRRGSVASPGEKGECGVRWREGRVWY 278
G +G G + G P G PG GE G + +G V +
Sbjct: 850 GSRGARGPTGKPG----PKGTSGGDGPPGPPGERGPQGPQGPVGF 890
Score = 60.8 bits (146), Expect = 1e-09
Identities = 63/222 (28%), Positives = 82/222 (36%), Gaps = 33/222 (14%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWR--------PLERRASVASPG 122
P P P + G G G +G+ G P G V P+ R PG
Sbjct: 893 PKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPG 952
Query: 123 EKGECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGE 182
GE G+P G+ G+ PG +G G G P ER PG +G
Sbjct: 953 PPGEQGLPGAAGK-------EGAKGDPGPQGISGKDGPAGLRGFPGER----GLPGAQGA 1001
Query: 183 CGVPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLER-----RASVASPGQKG 237
G+ EG P G V SPGE+G G G RP + +PG+KG
Sbjct: 1002 PGLKGGEGPQGPP----GPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKG 1057
Query: 238 ECGVPWREG-----AVWRPLDRRGSVASPGEKGECGVRWREG 274
G R+G + P GS G+KGE G ++G
Sbjct: 1058 PQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKG 1099
Score = 59.7 bits (143), Expect = 3e-09
Identities = 64/212 (30%), Positives = 78/212 (36%), Gaps = 39/212 (18%)
Query: 75 PAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREG 134
P PR R G G A G G+ G T G P PGE+G
Sbjct: 837 PGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPP-------GPPGERG--------- 880
Query: 135 RVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLER-----RASVASPGQKGECGVPWRE 189
P +G V PG KG G P ++G P +R + PG G G P
Sbjct: 881 ----PQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVG-PQGP 935
Query: 190 GGVWRPLERRGSVASPGEKGECGVP---WREGRVWRPLERRAS-----VASPGQKGECGV 241
G P+ RG PG GE G+P +EG P + S G GE G+
Sbjct: 936 TGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGL 995
Query: 242 PWREGAVW-----RPLDRRGSVASPGEKGECG 268
P +GA P G V SPGE+G G
Sbjct: 996 PGAQGAPGLKGGEGPQGPPGPVGSPGERGSAG 1027
Score = 59.3 bits (142), Expect = 4e-09
Identities = 64/213 (30%), Positives = 80/213 (37%), Gaps = 18/213 (8%)
Query: 74 VPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWRE 133
V P+ R GEAG AAG G G P +G P V PG+ G G P
Sbjct: 1232 VGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNP----GPVGFPGDPGPPGEPGPA 1287
Query: 134 GRVWRPLDR-----RGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWR 188
G+ D+ G PG GE G P G P A G+KG G
Sbjct: 1288 GQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAE-GRQGEKGAKGEAGA 1346
Query: 189 EG--GVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREG 246
EG G P+ +G PG +G G+P G P PG G G+P +G
Sbjct: 1347 EGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLP-GAAGQDGPPGPMGPPGLPGLKG 1405
Query: 247 AVWRPLDRR-----GSVASPGEKGECGVRWREG 274
++ G + PGE+GE G R G
Sbjct: 1406 DPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPG 1438
Score = 55.5 bits (132), Expect = 6e-08
Identities = 63/212 (29%), Positives = 82/212 (38%), Gaps = 31/212 (14%)
Query: 68 SAKPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGEC 127
+A P +P + G AG A GEKG G +G + V PG G
Sbjct: 1028 TAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGV-------QGPVGLPGPAGPA 1080
Query: 128 GVPWREG---RVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECG 184
G P +G + P ++GS GE G G P +G V P PG +G+ G
Sbjct: 1081 GSPGEDGDKGEIGEP-GQKGSKGDKGENGPPGPPGLQGPVGAP-GIAGGDGEPGPRGQQG 1138
Query: 185 VPWREG--------GVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQK 236
+ ++G G P+ +G PGEKGE G G P R G +
Sbjct: 1139 MFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPR-------GPQ 1191
Query: 237 GECGVPWREGAVWRPLDRRGSVASPGEKGECG 268
G G +G P GSV GEKGE G
Sbjct: 1192 GPNGADGPQG----PPGSVGSVGGVGEKGEPG 1219
Score = 55.1 bits (131), Expect = 8e-08
Identities = 64/236 (27%), Positives = 85/236 (36%), Gaps = 40/236 (16%)
Query: 75 PAPRPLRSIDGEAGHSEAAGEKGECGIPWTE---------GQVWRPLERRASVAS----- 120
P P L G G ++G KGE G P + G +P +R A
Sbjct: 492 PGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGM 551
Query: 121 PGEKGECGVPWREGRVWRPLDR-----RGSVASPGEKGECGVPWREG-----------GV 164
PGE G G +G P D+ RG PG G+ G+ +G G
Sbjct: 552 PGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGP 611
Query: 165 WRPLERRASVASPGQKGECGVPWREG--GVWRPLERRGSVASPGEKGECGVPWREGRVWR 222
L R + +PGQ G GV G G P G G G G+P +G +
Sbjct: 612 RGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGP 671
Query: 223 PLERRASVASPGQKGECGVPWREGAVWRPLDRRGSVASPGEKGECGVRWREGRVWY 278
P E+ G+ G G+P +G P G GEKG G +G + Y
Sbjct: 672 PGEK----GPQGKPGLAGLPGADGPPGHP----GKEGQSGEKGALGPPGPQGPIGY 719
Score = 50.8 bits (120), Expect = 1e-06
Identities = 64/221 (28%), Positives = 75/221 (33%), Gaps = 37/221 (16%)
Query: 75 PAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREG 134
P PR G+ G G++G G P G P+ + PGEKGE G G
Sbjct: 1131 PGPR------GQQGMFGQKGDEGARGFPGPPG----PIGLQGLPGPPGEKGENGDVGPMG 1180
Query: 135 RVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGGVWR 194
P RG G G G P G V E+ PG+ G G P E GV
Sbjct: 1181 PPGPP-GPRGPQGPNGADGPQGPPGSVGSVGGVGEK----GEPGEAGNPGPPG-EAGVGG 1234
Query: 195 PLERRGSVASPGEKGECGVPWREGRVW--RPLERRASVASP------------------G 234
P RG G G G P +G P V P G
Sbjct: 1235 PKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGG 1294
Query: 235 QKGECGVPWREGAVWRPLDRRGSVASPGEKGECGVRWREGR 275
KGE G P + G P G PG++G G EGR
Sbjct: 1295 DKGEDGDPGQPGPP-GPSGEAGPPGPPGKRGPPGAAGAEGR 1334
Score = 30.0 bits (66), Expect = 2.7
Identities = 39/168 (23%), Positives = 60/168 (35%), Gaps = 26/168 (15%)
Query: 53 DQMGSVEKLTTSAFLSAKPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPL 112
+++ + E LT + S + S + IDG G+ GE + +P
Sbjct: 296 EEIFTEEYLTGEDYDSQRKNSEDTLYENKEIDGRDSDLLVDGDLGEYDFYEYKEYEDKP- 354
Query: 113 ERRASVASPGEKGECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRA 172
+ P E+ GVP ++ G+ G+KGE
Sbjct: 355 -----TSPPNEEFGPGVPAETDITETSINGHGAYGEKGQKGE-----------------P 392
Query: 173 SVASPGQKGECGVPWREG--GVWRPLERRGSVASPGEKGECGVPWREG 218
+V PG E G P G G+ P +G PG+ G+ G P R G
Sbjct: 393 AVVEPGMLVE-GPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPG 439
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 70.9 bits (172), Expect = 1e-12
Identities = 66/219 (30%), Positives = 86/219 (39%), Gaps = 27/219 (12%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVP 130
P P PR ++ DG G + GEKGE G P +G + + R V G +GE G
Sbjct: 755 PIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGD-RGEVGQIGPRGEDGPE 813
Query: 131 WREGRVWRPLDRRGSVASPGEKGECGVPWREG--GVWRPLERRASVASPGQKGECGV--- 185
+GR P G GEKG+ GVP G G P PG GE G
Sbjct: 814 GPKGRA-GPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGV 872
Query: 186 -----PWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLER-----RASVASPGQ 235
P + G P RG+ G+ G G +G P ER + V PG
Sbjct: 873 AGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGP 932
Query: 236 KGECGVPWREGAVWRPLDRRGSVASPGEKGECGVRWREG 274
KG G P ++G PG++GE G + + G
Sbjct: 933 KGPPGPPGKDGL----------PGHPGQRGETGFQGKTG 961
Score = 63.9 bits (154), Expect = 2e-10
Identities = 59/192 (30%), Positives = 75/192 (39%), Gaps = 28/192 (14%)
Query: 85 GEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGRVWRPLDRR- 143
GE GH G GE G+P G + + PG +G G G P +R
Sbjct: 982 GERGHPGPPGPPGEQGLPGAAG-------KEGAKGDPGPQGISGKDGPAGLRGFPGERGL 1034
Query: 144 -GSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGGVWRPLERRGSV 202
G+ +PG KG G G V P ER S G G G+P R G P G
Sbjct: 1035 PGAQGAPGLKGGEGPQGPPGPVGSPGER----GSAGTAGPIGLPGRPGPQGPP-GPAGEK 1089
Query: 203 ASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWRPLDRRGSVASPG 262
+PGEKG G R+G + V PG G G P +G +G + PG
Sbjct: 1090 GAPGEKGPQGPAGRDGV-------QGPVGLPGPAGPAGSPGEDGD-------KGEIGEPG 1135
Query: 263 EKGECGVRWREG 274
+KG G + G
Sbjct: 1136 QKGSKGDKGENG 1147
Score = 62.8 bits (151), Expect = 4e-10
Identities = 58/196 (29%), Positives = 71/196 (36%), Gaps = 54/196 (27%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVP 130
P P P LR I G G G G+ G P G P PG KGE G P
Sbjct: 1400 PAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLP----GLKGDPGSKGEKGHP 1455
Query: 131 WREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREG 190
G + P ++ GEKG+ G+P +G SPG KG+ G+P G
Sbjct: 1456 GLIGLIGPPGEQ-------GEKGDRGLPGTQG-------------SPGAKGDGGIPGPAG 1495
Query: 191 GVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWR 250
PL G PG +G P + S GQKG+ G+P
Sbjct: 1496 ----PLGPPGPPGLPGPQG-------------PKGNKGSTGPAGQKGDSGLP-------- 1530
Query: 251 PLDRRGSVASPGEKGE 266
G SPG GE
Sbjct: 1531 -----GPPGSPGPPGE 1541
Score = 62.4 bits (150), Expect = 5e-10
Identities = 61/205 (29%), Positives = 79/205 (38%), Gaps = 41/205 (20%)
Query: 75 PAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWR--PLERRASVASPGEKGECGVPWR 132
P P R G AG GEKG G EG + P+ + PG +G G+P
Sbjct: 1356 PGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGP 1415
Query: 133 EGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGGV 192
G P G PG G G+P +G PG KGE G P G +
Sbjct: 1416 VGEQGLP-GAAGQDGPPGPMGPPGLPGLKG-------------DPGSKGEKGHPGLIGLI 1461
Query: 193 WRPLERR--------GSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWR 244
P E+ G+ SPG KG+ G+P G PL G G G+P
Sbjct: 1462 GPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAG----PL---------GPPGPPGLPGP 1508
Query: 245 EGAVWRPLDRRGSVASPGEKGECGV 269
+G P +GS G+KG+ G+
Sbjct: 1509 QG----PKGNKGSTGPAGQKGDSGL 1529
Score = 62.0 bits (149), Expect = 6e-10
Identities = 70/225 (31%), Positives = 85/225 (37%), Gaps = 28/225 (12%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAA---GEKGECGIPWTEGQVWRPLER--------RASVA 119
P P L DG GH GEKG G P +G + P R R
Sbjct: 716 PQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKG 775
Query: 120 SPGEKGECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQ 179
S GEKGE G P +G + D RG V G +GE G P G P G+
Sbjct: 776 SKGEKGEDGFPGFKGDMGLKGD-RGEVGQIGPRGEDG-PEGPKGRAGPTGDPGPSGQAGE 833
Query: 180 KGECGVPWREGGVWRPLERRGSVASP------GEKGECGVPWREGRVWRPLERRASVASP 233
KG+ GVP G R +GS P GEKG GV + G P +R
Sbjct: 834 KGKLGVPGLPGYPGRQ-GPKGSTGFPGFPGANGEKGARGVAGKPG----PRGQRGPTGPR 888
Query: 234 GQKGECGVPWREGAVWRPLDRRGSVASPGEKGECGVRWREGRVWY 278
G +G G + G P G PG GE G + +G V +
Sbjct: 889 GSRGARGPTGKPG----PKGTSGGDGPPGPPGERGPQGPQGPVGF 929
Score = 60.8 bits (146), Expect = 1e-09
Identities = 63/222 (28%), Positives = 82/222 (36%), Gaps = 33/222 (14%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWR--------PLERRASVASPG 122
P P P + G G G +G+ G P G V P+ R PG
Sbjct: 932 PKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPG 991
Query: 123 EKGECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGE 182
GE G+P G+ G+ PG +G G G P ER PG +G
Sbjct: 992 PPGEQGLPGAAGK-------EGAKGDPGPQGISGKDGPAGLRGFPGER----GLPGAQGA 1040
Query: 183 CGVPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLER-----RASVASPGQKG 237
G+ EG P G V SPGE+G G G RP + +PG+KG
Sbjct: 1041 PGLKGGEGPQGPP----GPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKG 1096
Query: 238 ECGVPWREG-----AVWRPLDRRGSVASPGEKGECGVRWREG 274
G R+G + P GS G+KGE G ++G
Sbjct: 1097 PQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKG 1138
Score = 59.7 bits (143), Expect = 3e-09
Identities = 64/212 (30%), Positives = 78/212 (36%), Gaps = 39/212 (18%)
Query: 75 PAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREG 134
P PR R G G A G G+ G T G P PGE+G
Sbjct: 876 PGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPP-------GPPGERG--------- 919
Query: 135 RVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLER-----RASVASPGQKGECGVPWRE 189
P +G V PG KG G P ++G P +R + PG G G P
Sbjct: 920 ----PQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVG-PQGP 974
Query: 190 GGVWRPLERRGSVASPGEKGECGVP---WREGRVWRPLERRAS-----VASPGQKGECGV 241
G P+ RG PG GE G+P +EG P + S G GE G+
Sbjct: 975 TGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGL 1034
Query: 242 PWREGAVW-----RPLDRRGSVASPGEKGECG 268
P +GA P G V SPGE+G G
Sbjct: 1035 PGAQGAPGLKGGEGPQGPPGPVGSPGERGSAG 1066
Score = 59.3 bits (142), Expect = 4e-09
Identities = 64/213 (30%), Positives = 80/213 (37%), Gaps = 18/213 (8%)
Query: 74 VPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWRE 133
V P+ R GEAG AAG G G P +G P V PG+ G G P
Sbjct: 1271 VGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNP----GPVGFPGDPGPPGEPGPA 1326
Query: 134 GRVWRPLDR-----RGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWR 188
G+ D+ G PG GE G P G P A G+KG G
Sbjct: 1327 GQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAE-GRQGEKGAKGEAGA 1385
Query: 189 EG--GVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREG 246
EG G P+ +G PG +G G+P G P PG G G+P +G
Sbjct: 1386 EGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLP-GAAGQDGPPGPMGPPGLPGLKG 1444
Query: 247 AVWRPLDRR-----GSVASPGEKGECGVRWREG 274
++ G + PGE+GE G R G
Sbjct: 1445 DPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPG 1477
Score = 55.5 bits (132), Expect = 6e-08
Identities = 63/212 (29%), Positives = 82/212 (38%), Gaps = 31/212 (14%)
Query: 68 SAKPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGEC 127
+A P +P + G AG A GEKG G +G + V PG G
Sbjct: 1067 TAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGV-------QGPVGLPGPAGPA 1119
Query: 128 GVPWREG---RVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECG 184
G P +G + P ++GS GE G G P +G V P PG +G+ G
Sbjct: 1120 GSPGEDGDKGEIGEP-GQKGSKGDKGENGPPGPPGLQGPVGAP-GIAGGDGEPGPRGQQG 1177
Query: 185 VPWREG--------GVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQK 236
+ ++G G P+ +G PGEKGE G G P R G +
Sbjct: 1178 MFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPR-------GPQ 1230
Query: 237 GECGVPWREGAVWRPLDRRGSVASPGEKGECG 268
G G +G P GSV GEKGE G
Sbjct: 1231 GPNGADGPQG----PPGSVGSVGGVGEKGEPG 1258
Score = 55.1 bits (131), Expect = 8e-08
Identities = 64/236 (27%), Positives = 85/236 (36%), Gaps = 40/236 (16%)
Query: 75 PAPRPLRSIDGEAGHSEAAGEKGECGIPWTE---------GQVWRPLERRASVAS----- 120
P P L G G ++G KGE G P + G +P +R A
Sbjct: 531 PGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGM 590
Query: 121 PGEKGECGVPWREGRVWRPLDR-----RGSVASPGEKGECGVPWREG-----------GV 164
PGE G G +G P D+ RG PG G+ G+ +G G
Sbjct: 591 PGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGP 650
Query: 165 WRPLERRASVASPGQKGECGVPWREG--GVWRPLERRGSVASPGEKGECGVPWREGRVWR 222
L R + +PGQ G GV G G P G G G G+P +G +
Sbjct: 651 RGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGP 710
Query: 223 PLERRASVASPGQKGECGVPWREGAVWRPLDRRGSVASPGEKGECGVRWREGRVWY 278
P E+ G+ G G+P +G P G GEKG G +G + Y
Sbjct: 711 PGEK----GPQGKPGLAGLPGADGPPGHP----GKEGQSGEKGALGPPGPQGPIGY 758
Score = 50.8 bits (120), Expect = 1e-06
Identities = 64/221 (28%), Positives = 75/221 (33%), Gaps = 37/221 (16%)
Query: 75 PAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREG 134
P PR G+ G G++G G P G P+ + PGEKGE G G
Sbjct: 1170 PGPR------GQQGMFGQKGDEGARGFPGPPG----PIGLQGLPGPPGEKGENGDVGPMG 1219
Query: 135 RVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGGVWR 194
P RG G G G P G V E+ PG+ G G P E GV
Sbjct: 1220 PPGPP-GPRGPQGPNGADGPQGPPGSVGSVGGVGEK----GEPGEAGNPGPPG-EAGVGG 1273
Query: 195 PLERRGSVASPGEKGECGVPWREGRVW--RPLERRASVASP------------------G 234
P RG G G G P +G P V P G
Sbjct: 1274 PKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGG 1333
Query: 235 QKGECGVPWREGAVWRPLDRRGSVASPGEKGECGVRWREGR 275
KGE G P + G P G PG++G G EGR
Sbjct: 1334 DKGEDGDPGQPGPP-GPSGEAGPPGPPGKRGPPGAAGAEGR 1373
Score = 30.0 bits (66), Expect = 2.7
Identities = 39/168 (23%), Positives = 60/168 (35%), Gaps = 26/168 (15%)
Query: 53 DQMGSVEKLTTSAFLSAKPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPL 112
+++ + E LT + S + S + IDG G+ GE + +P
Sbjct: 335 EEIFTEEYLTGEDYDSQRKNSEDTLYENKEIDGRDSDLLVDGDLGEYDFYEYKEYEDKP- 393
Query: 113 ERRASVASPGEKGECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRA 172
+ P E+ GVP ++ G+ G+KGE
Sbjct: 394 -----TSPPNEEFGPGVPAETDITETSINGHGAYGEKGQKGE-----------------P 431
Query: 173 SVASPGQKGECGVPWREG--GVWRPLERRGSVASPGEKGECGVPWREG 218
+V PG E G P G G+ P +G PG+ G+ G P R G
Sbjct: 432 AVVEPGMLVE-GPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPG 478
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 70.9 bits (172), Expect = 1e-12
Identities = 65/204 (31%), Positives = 82/204 (40%), Gaps = 23/204 (11%)
Query: 74 VPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWRE 133
+P LR GE G + GEKGE G+P G R GEKGE G+P +
Sbjct: 778 LPGKPGLRGEIGEQGLAGRPGEKGEAGLPGAPGFP----GVRGEKGDQGEKGELGLPGLK 833
Query: 134 GRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASP-GQKGECGVPWREGGV 192
G RG G G G+P ++ P R P G+KG+ G+P G
Sbjct: 834 G-------DRGEKGEAGPAGPPGLPGTT-SLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQ 885
Query: 193 WRP--LERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWR 250
RP L +G PG KG+ G G P +PG G G G+V
Sbjct: 886 GRPGELGPQGPTGPPGAKGQEGAHGAPGAAGNP-------GAPGHVGAPGPSGPPGSVGA 938
Query: 251 PLDRRGSVASPGEKGECGVRWREG 274
P RG+ GE+GE G EG
Sbjct: 939 P-GLRGTPGKDGERGEKGAAGEEG 961
Score = 68.9 bits (167), Expect = 5e-12
Identities = 74/238 (31%), Positives = 95/238 (39%), Gaps = 43/238 (18%)
Query: 67 LSAKPGSVPAPRPLRSIDGEAGHSEAAGEKGECGI------PWTEGQVWRPLERRASVAS 120
L PG V AP + GE G GEKGE G+ P GQ RP + VA
Sbjct: 576 LPGPPGRVGAP----GLQGERGEKGTRGEKGERGLDGFPGKPGDTGQQGRP--GPSGVAG 629
Query: 121 P-GEKGE---CGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVAS 176
P GEKG+ G P G V + +G +PG +G G P G P+
Sbjct: 630 PQGEKGDVGPAGPPGVPGSVVQQEGLKGEQGAPGPRGHQGAP-GPPGARGPIGPEGRDGP 688
Query: 177 P------GQKGECGVPWREG-----------GVWRPLERRGSVASPGEKGECGVPWREGR 219
P G+KG+ G P G GV P GS PGE G G P G
Sbjct: 689 PGLQGLRGKKGDMGPPGIPGLLGLQGPPGPPGVPGPPGPGGSPGLPGEIGFPGKPGPPGP 748
Query: 220 VWRPLE--------RRASVASPGQKGECGVPWREGAVWRPLDRRGSVASPGEKGECGV 269
P + + PG++GE G+P + G + + +G PGEKGE G+
Sbjct: 749 TGPPGKDGPNGPPGPPGTKGEPGERGEDGLPGKPG-LRGEIGEQGLAGRPGEKGEAGL 805
Score = 67.0 bits (162), Expect = 2e-11
Identities = 69/233 (29%), Positives = 92/233 (39%), Gaps = 47/233 (20%)
Query: 68 SAKPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRP--LERRASVASPGEKG 125
S PG +P DG+ G G+ GE G+P EG P +PG +G
Sbjct: 1233 SGLPG-IPGEEGKEGRDGKPGPPGEPGKAGEPGLPGPEGARGPPGFKGHTGDSGAPGPRG 1291
Query: 126 ECG---VPWREGRVWR-----------------PLDRRGSVASPGEKGECGVPWREG--- 162
E G +P +EG + P + GS SPGE G G P ++G
Sbjct: 1292 ESGAMGLPGQEGLPGKDGDTGPTGPQGPQGPRGPPGKNGSPGSPGEPGPSGTPGQKGSKG 1351
Query: 163 -----GVWRPLERRASVASPGQKGECGVPWREGGVWRPLER--RGSVASPGEKGECGVPW 215
G+ L R PG+ GE GVP +EG +P E +G PG KG+ G P
Sbjct: 1352 ENGSPGLPGFLGPR---GPPGEPGEKGVPGKEGVPGKPGEPGFKGERGDPGIKGDKGPPG 1408
Query: 216 REGRVWRPLERRASVASPGQKGECGVPWREGAVWRPLDRRGSVASPGEKGECG 268
+G+ P PG KG G+ +G G V PG G+ G
Sbjct: 1409 GKGQPGDP-------GIPGHKGHTGLMGPQGLP----GENGPVGPPGPPGQPG 1450
Score = 64.3 bits (155), Expect = 1e-10
Identities = 70/237 (29%), Positives = 98/237 (41%), Gaps = 48/237 (20%)
Query: 50 PREDQMGSVEKLTTSAFLSAK-------PGSVPAPRPLRSIDGEAGHSEAAGEKGECGI- 101
P +Q+G ++ + S K P +P P+ G G GEKG+ GI
Sbjct: 463 PGSEQIGFLKTINCSCPAGEKGEMGVAGPMGLPGPKGDIGAIGPVGAPGPKGEKGDVGIG 522
Query: 102 PWTEGQVWRPLERRASVASPGEKGECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWRE 161
P+ +G+ GEKG G+P GR +G PGE GE G+P E
Sbjct: 523 PFGQGE-------------KGEKGSLGLPGPPGRD----GSKGMRGEPGELGEPGLP-GE 564
Query: 162 GGVWRPLERRASVASPGQKGECGVPWREGGVWRPLERRGSVASPGEKGECGV------PW 215
G+ P + PG G G P +G RG + GEKGE G+ P
Sbjct: 565 VGMRGP---QGPPGLPGPPGRVGAPGLQG-------ERGEKGTRGEKGERGLDGFPGKPG 614
Query: 216 REGRVWRPLERRASVASP-GQKGE---CGVPWREGAVWRPLDRRGSVASPGEKGECG 268
G+ RP + VA P G+KG+ G P G+V + +G +PG +G G
Sbjct: 615 DTGQQGRP--GPSGVAGPQGEKGDVGPAGPPGVPGSVVQQEGLKGEQGAPGPRGHQG 669
Score = 63.2 bits (152), Expect = 3e-10
Identities = 65/218 (29%), Positives = 85/218 (38%), Gaps = 37/218 (16%)
Query: 85 GEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGRVWRPLDRRG 144
G AG G+ G G P G V + + +PG +G G P G P+ G
Sbjct: 626 GVAGPQGEKGDVGPAGPPGVPGSVVQQEGLKGEQGAPGPRGHQGAPGPPG-ARGPIGPEG 684
Query: 145 SVASP------GEKGECGVPWREG-----------GVWRPLERRASVASPGQKGECGVPW 187
P G+KG+ G P G GV P SPG GE G P
Sbjct: 685 RDGPPGLQGLRGKKGDMGPPGIPGLLGLQGPPGPPGVPGP---PGPGGSPGLPGEIGFPG 741
Query: 188 REG-----------GVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQK 236
+ G G P G+ PGE+GE G+P + G + + + PG+K
Sbjct: 742 KPGPPGPTGPPGKDGPNGPPGPPGTKGEPGERGEDGLPGKPG-LRGEIGEQGLAGRPGEK 800
Query: 237 GECGVPWREGAVWRPLDRRGSVASPGEKGECGVRWREG 274
GE G+P GA P RG GEKGE G+ +G
Sbjct: 801 GEAGLP---GAPGFP-GVRGEKGDQGEKGELGLPGLKG 834
Score = 63.2 bits (152), Expect = 3e-10
Identities = 62/205 (30%), Positives = 81/205 (39%), Gaps = 44/205 (21%)
Query: 77 PRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGRV 136
P ++ G+ G G G GIP EG+ R + PG+ GE G+P EG
Sbjct: 1214 PPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRD-GKPGPPGEPGKAGEPGLPGPEGAR 1272
Query: 137 WRP--LDRRGSVASPGEKGECG---VPWREGGVWRPLERRASVASPGQKGECGVPWREG- 190
P G +PG +GE G +P +EG PG+ G+ G +G
Sbjct: 1273 GPPGFKGHTGDSGAPGPRGESGAMGLPGQEG-------------LPGKDGDTGPTGPQGP 1319
Query: 191 -GVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVW 249
G P + GS SPGE G G P ++G KGE G P G +
Sbjct: 1320 QGPRGPPGKNGSPGSPGEPGPSGTPGQKG----------------SKGENGSPGLPGFL- 1362
Query: 250 RPLDRRGSVASPGEKGECGVRWREG 274
G PGE GE GV +EG
Sbjct: 1363 ------GPRGPPGEPGEKGVPGKEG 1381
Score = 59.3 bits (142), Expect = 4e-09
Identities = 61/208 (29%), Positives = 81/208 (38%), Gaps = 34/208 (16%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASP-GEKGECGV 129
PG +P + + + G+ G G+KGE G P G +A P G +GE G
Sbjct: 1125 PG-LPGFKGDKGVPGKPGREGTEGKKGEAGPPGLPGP--------PGIAGPQGSQGERGA 1175
Query: 130 PWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWRE 189
G ++G PG G G P G P + G G G P +E
Sbjct: 1176 DGEVG-------QKGDQGHPGVPGFMGPPGNPG----PPGADGIAGAAGPPGIQGSPGKE 1224
Query: 190 GGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVW 249
G P +G PG GE G R+G+ P E PG+ GE G+P EGA
Sbjct: 1225 G----PPGPQGPSGLPGIPGEEGKEGRDGKPGPPGE-------PGKAGEPGLPGPEGARG 1273
Query: 250 RP--LDRRGSVASPGEKGECGVRWREGR 275
P G +PG +GE G G+
Sbjct: 1274 PPGFKGHTGDSGAPGPRGESGAMGLPGQ 1301
Score = 54.7 bits (130), Expect = 1e-07
Identities = 66/229 (28%), Positives = 86/229 (37%), Gaps = 33/229 (14%)
Query: 68 SAKPGSVPAP--RPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRP----LERRASVASP 121
S PGSV AP R DGE G AAGE+G G G P + P
Sbjct: 930 SGPPGSVGAPGLRGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPPGKGKDGEP 989
Query: 122 GEKGECGVPWREGRVWRPLDRRGS-------VASPGEKGECGVPWREG----------GV 164
G +G G+P G RGS G++G G+P G G
Sbjct: 990 GLRGSPGLPGPLGTKAACGKVRGSENCALGGQCVKGDRGAPGIPGSPGSRGDPGIGVAGP 1049
Query: 165 WRPLERRASVASPGQKGECGVPWREGGVWRPLERRGSVASPGEKGECGVP-----WREGR 219
P SPG +G G P +G P R G+ +PGE+G G P G
Sbjct: 1050 PGPSGPPGDKGSPGSRGLPGFPGPQG----PAGRDGAPGNPGERGPPGKPGLSSLLSPGD 1105
Query: 220 VWRPLERRASVASPGQKGECGVPWREGAVWRPLDRRGSVASPGEKGECG 268
+ + + PG G G+P +G P + G + G+KGE G
Sbjct: 1106 INLLAKDVCNDCPPGPPGLPGLPGFKGDKGVP-GKPGREGTEGKKGEAG 1153
Score = 49.3 bits (116), Expect = 4e-06
Identities = 53/183 (28%), Positives = 67/183 (36%), Gaps = 61/183 (33%)
Query: 93 AGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGRVWRPLDRRGSVASPGEK 152
AGEKGE G+ G PG KG+ G + G+ GEK
Sbjct: 480 AGEKGEMGVAGPMGL-------------PGPKGDIGA----------IGPVGAPGPKGEK 516
Query: 153 GECGV-PWREGGVWRPLERRASVASPGQKGECGVPWREGGVWRPLERRGSVASPGEKGEC 211
G+ G+ P+ +G G+KG G+P G R GS GE GE
Sbjct: 517 GDVGIGPFGQG-------------EKGEKGSLGLPGPPG-------RDGSKGMRGEPGEL 556
Query: 212 GVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWRPLDRRGSVASPGEKGECGVRW 271
G P G V G +G G P G P R G+ GE+GE G R
Sbjct: 557 GEPGLPGEV-------------GMRGPQGPPGLPG----PPGRVGAPGLQGERGEKGTRG 599
Query: 272 REG 274
+G
Sbjct: 600 EKG 602
Score = 40.8 bits (94), Expect = 0.002
Identities = 55/228 (24%), Positives = 77/228 (33%), Gaps = 65/228 (28%)
Query: 83 IDGEAGHSEAAGEKGECGIPWTEGQVWR------PLERRASVASPGEKGECGVPWREGR- 135
I G+ G G+ G+ GIP +G P E V PG G+ G P G
Sbjct: 1400 IKGDKGPPGGKGQPGDPGIPGHKGHTGLMGPQGLPGEN-GPVGPPGPPGQPGFPGLRGES 1458
Query: 136 -------------VWRPLDRR-----------------GSVASPGEKGECGVPWREGGVW 165
+ + L+ R G PG G+ G+P R G
Sbjct: 1459 PSMETLRRLIQEELGKQLETRLAYLLAQMPPAYMKSSQGRPGPPGPPGKDGLPGRAG--- 1515
Query: 166 RPLERRASVASPGQKGECGVPWREGGVWRPLERRGSVASPGE-----KGECGVPWREGRV 220
+ PG+ G+ G+ G + P RG+ PG +GE G P G+
Sbjct: 1516 -------PMGEPGRPGQGGLEGPSGPI-GPKGERGAKGDPGAPGVGLRGEMGPPGIPGQP 1567
Query: 221 WRPLERRASVAS-PGQKGECGVPWREGAVWRPLDRRGSVASPGEKGEC 267
P + + PG +GE G P G PG G+C
Sbjct: 1568 GEPGYAKDGLPGIPGPQGETG----------PAGHPGLPGPPGPPGQC 1605
>gi|5803080 macrophage receptor with collagenous structure [Homo
sapiens]
Length = 520
Score = 70.5 bits (171), Expect = 2e-12
Identities = 77/284 (27%), Positives = 112/284 (39%), Gaps = 57/284 (20%)
Query: 29 SSHGGDSDKDLCARTQIYGAQPREDQMGSVEKLTTSAFLSAKPGSVPAPRPLRSIDGEAG 88
S+H G+ +R Q+ AQ ++ L + PG + I GE G
Sbjct: 99 SAHPGEHLAQGASRLQVLQAQLTWVRVSHEHLLQRVDNFTQNPG-------MFRIKGEQG 151
Query: 89 HSEAAGEKGECGIPWTEGQVWRPLERRASVA--------------SPGEKGECGVPWREG 134
G KG G+P G P E+ A A PG KGE G+ +G
Sbjct: 152 APGLQGHKGAMGMPGAPGPPGPPAEKGAKGAMGRDGATGPSGPQGPPGVKGEAGLQGPQG 211
Query: 135 RVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREG---- 190
++G+ +PG +GE G +GG+ P + + G+KG+ G+P +G
Sbjct: 212 AP----GKQGATGTPGPQGEKGSK-GDGGLIGP---KGETGTKGEKGDLGLPGSKGDRGM 263
Query: 191 ----GVWRPLERRGS------------VASPGEKGECGVPWREGRVWRPLERRASVASPG 234
GV P +GS PG KG+ G P +G P +V PG
Sbjct: 264 KGDAGVMGPPGAQGSKGDFGRPGPPGLAGFPGAKGDQGQPGLQGVPGPP----GAVGHPG 319
Query: 235 QKGE---CGVPWREGAVWRPLDRRGSVASPGEKGECGVRWREGR 275
KGE G P R G P G+ G KG+ G++ ++GR
Sbjct: 320 AKGEPGSAGSPGRAGLPGSP-GSPGATGLKGSKGDTGLQGQQGR 362
Score = 54.3 bits (129), Expect = 1e-07
Identities = 62/214 (28%), Positives = 81/214 (37%), Gaps = 52/214 (24%)
Query: 85 GEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASP----GEKGECGVPWREGRVWRPL 140
G G + GEKG+ G+P ++G R ++ A V P G KG+ G P G P
Sbjct: 238 GPKGETGTKGEKGDLGLPGSKGD--RGMKGDAGVMGPPGAQGSKGDFGRPGPPGLAGFPG 295
Query: 141 DRR--------------GSVASPGEKGE---CGVPWREGGVWRPLERRASVASPGQKGEC 183
+ G+V PG KGE G P R G P A+ G KG+
Sbjct: 296 AKGDQGQPGLQGVPGPPGAVGHPGAKGEPGSAGSPGRAGLPGSPGSPGAT-GLKGSKGDT 354
Query: 184 GVPWREG-----GVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGE 238
G+ ++G GV P +G SPG G G P GQKG+
Sbjct: 355 GLQGQQGRKGESGVPGPAGVKGEQGSPGLAGPKGAP----------------GQAGQKGD 398
Query: 239 CGVPWREGAVWRPLDRRGSVASPGEKGECGVRWR 272
GV G +G GE+GE V R
Sbjct: 399 QGVKGSSG-------EQGVKGEKGERGENSVSVR 425
Score = 38.1 bits (87), Expect = 0.010
Identities = 30/98 (30%), Positives = 38/98 (38%), Gaps = 15/98 (15%)
Query: 65 AFLSAKPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEK 124
A L PGS P L+ G+ G G KGE G+P G + SPG
Sbjct: 333 AGLPGSPGS-PGATGLKGSKGDTGLQGQQGRKGESGVPGPAGV-------KGEQGSPGLA 384
Query: 125 GECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREG 162
G G P + G ++G G GE GV +G
Sbjct: 385 GPKGAPGQAG-------QKGDQGVKGSSGEQGVKGEKG 415
>gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [Homo
sapiens]
Length = 828
Score = 70.5 bits (171), Expect = 2e-12
Identities = 76/249 (30%), Positives = 97/249 (38%), Gaps = 49/249 (19%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIP---WTEGQVWR----------------- 110
P P P+ + GE G A G KG G+ T+GQ +
Sbjct: 293 PIGFPGPKGVPGFKGEKGEFGADGRKGAPGLAGKNGTDGQKGKLGRIGPPGCKGDPGNRG 352
Query: 111 PLERRASVASPGEKGE---CGVPWREGRVWRPLD-----------RRGSVASPGEKGECG 156
P SPGE+G+ G P R GR P + G+ SPG KG G
Sbjct: 353 PDGYPGEAGSPGERGDQGGKGDPGRPGRRGPPGEIGAKGSKGYQGNSGAPGSPGVKGAKG 412
Query: 157 VPWREGGVWRPLER-----RASVASPGQKGECGVPWREGGVWRPLERRGSVASPGEKGEC 211
P G P R + S S G KGE G P EG P G V + G KG+
Sbjct: 413 GPGPRGPKGEPGRRGDPGTKGSPGSDGPKGEKGDPGPEG----PRGLAGEVGNKGAKGDR 468
Query: 212 GVP---WREGRVWRPLER--RASVASPGQKGECGVPWREGAVWRP-LDRRGSVASPGEKG 265
G+P +G + P ++ R G +G+ G P +G RP G +PGEKG
Sbjct: 469 GLPGPRGPQGALGEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKG 528
Query: 266 ECGVRWREG 274
E G R EG
Sbjct: 529 EPGPRGPEG 537
Score = 62.4 bits (150), Expect = 5e-10
Identities = 64/209 (30%), Positives = 82/209 (39%), Gaps = 32/209 (15%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLER-----RASVASPGEKG 125
PG + A + + G +G + G KG G P G P R + S S G KG
Sbjct: 384 PGEIGA-KGSKGYQGNSGAPGSPGVKGAKGGPGPRGPKGEPGRRGDPGTKGSPGSDGPKG 442
Query: 126 ECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREG--GVWRPLERRASVASPGQ---K 180
E G P EG P G V + G KG+ G+P G G ++ S PG +
Sbjct: 443 EKGDPGPEG----PRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGPR 498
Query: 181 GECGVPWREGGVWRP-LERRGSVASPGEKGECGV---------------PWREGRVWRPL 224
G+ G P +G RP G +PGEKGE G P R+G P
Sbjct: 499 GDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRGDFGLKGEPGRKGEKGEPA 558
Query: 225 ERRASVASPGQKGECGVPWREGAVWRPLD 253
+ PG +G GVP EG P D
Sbjct: 559 DP-GPPGEPGPRGPRGVPGPEGEPGPPGD 586
Score = 58.9 bits (141), Expect = 5e-09
Identities = 49/147 (33%), Positives = 63/147 (42%), Gaps = 8/147 (5%)
Query: 75 PAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLER--RASVASPGEKGECGVPWR 132
P P R + GE G+ A G++G G +G + P ++ R G +G+ G P
Sbjct: 447 PGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGPRGDSGQPGP 506
Query: 133 EGRVWRP-LDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGG 191
+G RP G +PGEKGE G EGG PG+KGE G P G
Sbjct: 507 KGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGG----RGDFGLKGEPGRKGEKGEPADPGP 562
Query: 192 VWRPLERRGSVASPGEKGECGVPWREG 218
P RG PG +GE G P G
Sbjct: 563 PGEP-GPRGPRGVPGPEGEPGPPGDPG 588
Score = 45.8 bits (107), Expect = 5e-05
Identities = 44/155 (28%), Positives = 58/155 (37%), Gaps = 32/155 (20%)
Query: 121 PGEKGECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQK 180
PG G G ++G G PG+KG G P EG + P PG K
Sbjct: 255 PGPSGPKGYRGQKGAK----GNMGEPGEPGQKGRQGDPGIEGPIGFP----GPKGVPGFK 306
Query: 181 GECGVPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECG 240
GE G +G R+G+ G+ G G + GR+ P PG +G G
Sbjct: 307 GEKGEFGADG-------RKGAPGLAGKNGTDGQKGKLGRIGPP----GCKGDPGNRGPDG 355
Query: 241 VPWREGAVWRPLDRRGSVASPGEKGECGVRWREGR 275
P G SPGE+G+ G + GR
Sbjct: 356 YP-------------GEAGSPGERGDQGGKGDPGR 377
>gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo
sapiens]
Length = 918
Score = 70.5 bits (171), Expect = 2e-12
Identities = 76/249 (30%), Positives = 97/249 (38%), Gaps = 49/249 (19%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIP---WTEGQVWR----------------- 110
P P P+ + GE G A G KG G+ T+GQ +
Sbjct: 293 PIGFPGPKGVPGFKGEKGEFGADGRKGAPGLAGKNGTDGQKGKLGRIGPPGCKGDPGNRG 352
Query: 111 PLERRASVASPGEKGE---CGVPWREGRVWRPLD-----------RRGSVASPGEKGECG 156
P SPGE+G+ G P R GR P + G+ SPG KG G
Sbjct: 353 PDGYPGEAGSPGERGDQGGKGDPGRPGRRGPPGEIGAKGSKGYQGNSGAPGSPGVKGAKG 412
Query: 157 VPWREGGVWRPLER-----RASVASPGQKGECGVPWREGGVWRPLERRGSVASPGEKGEC 211
P G P R + S S G KGE G P EG P G V + G KG+
Sbjct: 413 GPGPRGPKGEPGRRGDPGTKGSPGSDGPKGEKGDPGPEG----PRGLAGEVGNKGAKGDR 468
Query: 212 GVP---WREGRVWRPLER--RASVASPGQKGECGVPWREGAVWRP-LDRRGSVASPGEKG 265
G+P +G + P ++ R G +G+ G P +G RP G +PGEKG
Sbjct: 469 GLPGPRGPQGALGEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKG 528
Query: 266 ECGVRWREG 274
E G R EG
Sbjct: 529 EPGPRGPEG 537
Score = 62.4 bits (150), Expect = 5e-10
Identities = 64/209 (30%), Positives = 82/209 (39%), Gaps = 32/209 (15%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLER-----RASVASPGEKG 125
PG + A + + G +G + G KG G P G P R + S S G KG
Sbjct: 384 PGEIGA-KGSKGYQGNSGAPGSPGVKGAKGGPGPRGPKGEPGRRGDPGTKGSPGSDGPKG 442
Query: 126 ECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREG--GVWRPLERRASVASPGQ---K 180
E G P EG P G V + G KG+ G+P G G ++ S PG +
Sbjct: 443 EKGDPGPEG----PRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGPR 498
Query: 181 GECGVPWREGGVWRP-LERRGSVASPGEKGECGV---------------PWREGRVWRPL 224
G+ G P +G RP G +PGEKGE G P R+G P
Sbjct: 499 GDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRGDFGLKGEPGRKGEKGEPA 558
Query: 225 ERRASVASPGQKGECGVPWREGAVWRPLD 253
+ PG +G GVP EG P D
Sbjct: 559 DP-GPPGEPGPRGPRGVPGPEGEPGPPGD 586
Score = 58.9 bits (141), Expect = 5e-09
Identities = 49/147 (33%), Positives = 63/147 (42%), Gaps = 8/147 (5%)
Query: 75 PAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLER--RASVASPGEKGECGVPWR 132
P P R + GE G+ A G++G G +G + P ++ R G +G+ G P
Sbjct: 447 PGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGPRGDSGQPGP 506
Query: 133 EGRVWRP-LDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGG 191
+G RP G +PGEKGE G EGG PG+KGE G P G
Sbjct: 507 KGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGG----RGDFGLKGEPGRKGEKGEPADPGP 562
Query: 192 VWRPLERRGSVASPGEKGECGVPWREG 218
P RG PG +GE G P G
Sbjct: 563 PGEP-GPRGPRGVPGPEGEPGPPGDPG 588
Score = 45.8 bits (107), Expect = 5e-05
Identities = 44/155 (28%), Positives = 58/155 (37%), Gaps = 32/155 (20%)
Query: 121 PGEKGECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQK 180
PG G G ++G G PG+KG G P EG + P PG K
Sbjct: 255 PGPSGPKGYRGQKGAK----GNMGEPGEPGQKGRQGDPGIEGPIGFP----GPKGVPGFK 306
Query: 181 GECGVPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECG 240
GE G +G R+G+ G+ G G + GR+ P PG +G G
Sbjct: 307 GEKGEFGADG-------RKGAPGLAGKNGTDGQKGKLGRIGPP----GCKGDPGNRGPDG 355
Query: 241 VPWREGAVWRPLDRRGSVASPGEKGECGVRWREGR 275
P G SPGE+G+ G + GR
Sbjct: 356 YP-------------GEAGSPGERGDQGGKGDPGR 377
>gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Homo
sapiens]
Length = 1019
Score = 70.5 bits (171), Expect = 2e-12
Identities = 76/249 (30%), Positives = 97/249 (38%), Gaps = 49/249 (19%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIP---WTEGQVWR----------------- 110
P P P+ + GE G A G KG G+ T+GQ +
Sbjct: 293 PIGFPGPKGVPGFKGEKGEFGADGRKGAPGLAGKNGTDGQKGKLGRIGPPGCKGDPGNRG 352
Query: 111 PLERRASVASPGEKGE---CGVPWREGRVWRPLD-----------RRGSVASPGEKGECG 156
P SPGE+G+ G P R GR P + G+ SPG KG G
Sbjct: 353 PDGYPGEAGSPGERGDQGGKGDPGRPGRRGPPGEIGAKGSKGYQGNSGAPGSPGVKGAKG 412
Query: 157 VPWREGGVWRPLER-----RASVASPGQKGECGVPWREGGVWRPLERRGSVASPGEKGEC 211
P G P R + S S G KGE G P EG P G V + G KG+
Sbjct: 413 GPGPRGPKGEPGRRGDPGTKGSPGSDGPKGEKGDPGPEG----PRGLAGEVGNKGAKGDR 468
Query: 212 GVP---WREGRVWRPLER--RASVASPGQKGECGVPWREGAVWRP-LDRRGSVASPGEKG 265
G+P +G + P ++ R G +G+ G P +G RP G +PGEKG
Sbjct: 469 GLPGPRGPQGALGEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKG 528
Query: 266 ECGVRWREG 274
E G R EG
Sbjct: 529 EPGPRGPEG 537
Score = 62.4 bits (150), Expect = 5e-10
Identities = 64/209 (30%), Positives = 82/209 (39%), Gaps = 32/209 (15%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLER-----RASVASPGEKG 125
PG + A + + G +G + G KG G P G P R + S S G KG
Sbjct: 384 PGEIGA-KGSKGYQGNSGAPGSPGVKGAKGGPGPRGPKGEPGRRGDPGTKGSPGSDGPKG 442
Query: 126 ECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREG--GVWRPLERRASVASPGQ---K 180
E G P EG P G V + G KG+ G+P G G ++ S PG +
Sbjct: 443 EKGDPGPEG----PRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGPR 498
Query: 181 GECGVPWREGGVWRP-LERRGSVASPGEKGECGV---------------PWREGRVWRPL 224
G+ G P +G RP G +PGEKGE G P R+G P
Sbjct: 499 GDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRGDFGLKGEPGRKGEKGEPA 558
Query: 225 ERRASVASPGQKGECGVPWREGAVWRPLD 253
+ PG +G GVP EG P D
Sbjct: 559 DP-GPPGEPGPRGPRGVPGPEGEPGPPGD 586
Score = 58.9 bits (141), Expect = 5e-09
Identities = 49/147 (33%), Positives = 63/147 (42%), Gaps = 8/147 (5%)
Query: 75 PAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLER--RASVASPGEKGECGVPWR 132
P P R + GE G+ A G++G G +G + P ++ R G +G+ G P
Sbjct: 447 PGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGPRGDSGQPGP 506
Query: 133 EGRVWRP-LDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGG 191
+G RP G +PGEKGE G EGG PG+KGE G P G
Sbjct: 507 KGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGG----RGDFGLKGEPGRKGEKGEPADPGP 562
Query: 192 VWRPLERRGSVASPGEKGECGVPWREG 218
P RG PG +GE G P G
Sbjct: 563 PGEP-GPRGPRGVPGPEGEPGPPGDPG 588
Score = 45.8 bits (107), Expect = 5e-05
Identities = 44/155 (28%), Positives = 58/155 (37%), Gaps = 32/155 (20%)
Query: 121 PGEKGECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQK 180
PG G G ++G G PG+KG G P EG + P PG K
Sbjct: 255 PGPSGPKGYRGQKGAK----GNMGEPGEPGQKGRQGDPGIEGPIGFP----GPKGVPGFK 306
Query: 181 GECGVPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECG 240
GE G +G R+G+ G+ G G + GR+ P PG +G G
Sbjct: 307 GEKGEFGADG-------RKGAPGLAGKNGTDGQKGKLGRIGPP----GCKGDPGNRGPDG 355
Query: 241 VPWREGAVWRPLDRRGSVASPGEKGECGVRWREGR 275
P G SPGE+G+ G + GR
Sbjct: 356 YP-------------GEAGSPGERGDQGGKGDPGR 377
>gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens]
Length = 957
Score = 69.3 bits (168), Expect = 4e-12
Identities = 72/265 (27%), Positives = 102/265 (38%), Gaps = 50/265 (18%)
Query: 46 YGAQPREDQMGSVEKLTTSAFLSAKPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTE 105
Y QP +D + + + + PG + R L GE G G+KG+ G+P
Sbjct: 468 YPGQPGQDGKPGYQGIAGTPGVPGSPG-IQGARGLPGYKGEPGRD---GDKGDRGLPGFP 523
Query: 106 GQVWRP-----LERRASVASP---------GEKGECGVPWREGRVWRP--LDRRGSVASP 149
G P + + SP GEKG G P G P + G + SP
Sbjct: 524 GLHGMPGSKGEMGAKGDKGSPGFYGKKGAKGEKGNAGFPGLPGPAGEPGRHGKDGLMGSP 583
Query: 150 GEKGEC---GVPWREGGVWRP-----------LERRASVASPGQKGECGVPWREG----- 190
G KGE G P ++G P + ++ + PGQ+G+ G P G
Sbjct: 584 GFKGEAGSPGAPGQDGTRGEPGIPGFPGNRGLMGQKGEIGPPGQQGKKGAPGMPGLMGSN 643
Query: 191 GVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWR 250
G GS S GE G G+P G P + SPG+ G G+P +G
Sbjct: 644 GSPGQPGTPGSKGSKGEPGIQGMPGASGLKGEP----GATGSPGEPGYMGLPGIQG---- 695
Query: 251 PLDRRGSVASPGEKGECGVRWREGR 275
++G + GEKG G + GR
Sbjct: 696 ---KKGDKGNQGEKGIQGQKGENGR 717
Score = 67.4 bits (163), Expect = 2e-11
Identities = 59/206 (28%), Positives = 84/206 (40%), Gaps = 25/206 (12%)
Query: 85 GEAGHSEAAGEKGECGIPWTEGQVWRPLE--RRASVASPGEKGECG---VPWREGRVWRP 139
G G A GEKG G P G P + + SPG KGE G P ++G P
Sbjct: 545 GFYGKKGAKGEKGNAGFPGLPGPAGEPGRHGKDGLMGSPGFKGEAGSPGAPGQDGTRGEP 604
Query: 140 -----------LDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWR 188
+ ++G + PG++G+ G P G + +PG KG G P
Sbjct: 605 GIPGFPGNRGLMGQKGEIGPPGQQGKKGAPGMPG-LMGSNGSPGQPGTPGSKGSKGEPGI 663
Query: 189 EG--GVWRPLERRGSVASPGEKGECGVPWREGRVWRPLER--RASVASPGQKGECGVPWR 244
+G G G+ SPGE G G+P +G+ + + G+ G G+P +
Sbjct: 664 QGMPGASGLKGEPGATGSPGEPGYMGLPGIQGKKGDKGNQGEKGIQGQKGENGRQGIPGQ 723
Query: 245 EGAVWRPLDRRGSVASPGEKGECGVR 270
+G G+ GEKGE GVR
Sbjct: 724 QGI----QGHHGAKGERGEKGEPGVR 745
Score = 44.7 bits (104), Expect = 1e-04
Identities = 53/187 (28%), Positives = 66/187 (35%), Gaps = 35/187 (18%)
Query: 85 GEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGRVWRPLDRRG 144
G GH A GE+GE G P G + G KGE GV G P +G
Sbjct: 725 GIQGHHGAKGERGEKGEPGVRGAI-------------GSKGESGVDGLMG----PAGPKG 767
Query: 145 SVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGGVW---RPLERRGS 201
PG +G G+ + G + R V + + + V + G + L + GS
Sbjct: 768 QPGDPGPQGPPGLDGKPGREFSEQFIR-QVCTDVIRAQLPVLLQSGRIRNCDHCLSQHGS 826
Query: 202 VASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWRPLDRRGSVASP 261
PG G G G PG G GVP G RP RG P
Sbjct: 827 PGIPGPPGPIGPEGPRG-------------LPGLPGRDGVPGLVGVPGRP-GVRGLKGLP 872
Query: 262 GEKGECG 268
G GE G
Sbjct: 873 GRNGEKG 879
>gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo
sapiens]
Length = 2971
Score = 68.9 bits (167), Expect = 5e-12
Identities = 58/202 (28%), Positives = 79/202 (39%), Gaps = 29/202 (14%)
Query: 85 GEAGHSEAAGEKGECGIPWTEGQVWRPLER--RASVASPGEKGECGVPWREGRVWRPLDR 142
GE G GE G+ G+P + G+ P R + GE+G+ G+ G +
Sbjct: 1901 GEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQDSQE 1960
Query: 143 RGSVASPGEKGECGVPWREGGVWRPLE--------RRASVASPGQKGECGVPWREGGVWR 194
RG G+ G GVP R+G P E RR + G KG G P EG
Sbjct: 1961 RGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEG---- 2016
Query: 195 PLERRGSVASPGEKGECGVPWREGR--VWRPLERRASVASPGQKGECGVPWREGAVWRPL 252
+G+ + G G G P G + P + +PG++G G PL
Sbjct: 2017 ---EQGTRGAQGPAGPAGPPGLIGEQGISGPRGSGGAAGAPGERGRTG----------PL 2063
Query: 253 DRRGSVASPGEKGECGVRWREG 274
R+G PG KG G R G
Sbjct: 2064 GRKGEPGEPGPKGGIGNRGPRG 2085
Score = 65.9 bits (159), Expect = 4e-11
Identities = 56/194 (28%), Positives = 78/194 (40%), Gaps = 26/194 (13%)
Query: 85 GEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGRVWRP----- 139
G+ G GE+G+ GI G + + R G+ G GVP R+G P
Sbjct: 1931 GDKGPRGEKGERGDVGIRGDPGNPGQDSQERGPKGETGDLGPMGVPGRDGVPGGPGETGK 1990
Query: 140 ---LDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPW--REGGVWR 194
RRG + G KG G P EG + + + G G G P E G+
Sbjct: 1991 NGGFGRRGPPGAKGNKGGPGQPGFEG-------EQGTRGAQGPAGPAGPPGLIGEQGISG 2043
Query: 195 PLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWRPLDR 254
P G+ +PGE+G G R+G P + + + G +GE G R+G
Sbjct: 2044 PRGSGGAAGAPGERGRTGPLGRKGEPGEP-GPKGGIGNRGPRGETGDDGRDGV------- 2095
Query: 255 RGSVASPGEKGECG 268
GS G+KGE G
Sbjct: 2096 -GSEGRRGKKGERG 2108
Score = 59.7 bits (143), Expect = 3e-09
Identities = 57/193 (29%), Positives = 73/193 (37%), Gaps = 30/193 (15%)
Query: 85 GEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGRVWRPLDR-- 142
G+ G G G GIP +G P + PGE+G GV +G P R
Sbjct: 1832 GQRGDRGPIGSIGPKGIPGEDGYRGYPGDE----GGPGERGPPGVNGTQGFQGCPGQRGV 1887
Query: 143 RGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGGVWRPLERRGSV 202
+GS PGEKGE G +G ++ PG GE G P R G +G
Sbjct: 1888 KGSRGFPGEKGEVGEIGLDGLDGEDGDK----GLPGSSGEKGNPGRRGD-------KGPR 1936
Query: 203 ASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWRPLDRRGSVASPG 262
GE+G+ G+ G + + R G G GVP R+G PG
Sbjct: 1937 GEKGERGDVGIRGDPGNPGQDSQERGPKGETGDLGPMGVPGRDGV-------------PG 1983
Query: 263 EKGECGVRWREGR 275
GE G GR
Sbjct: 1984 GPGETGKNGGFGR 1996
Score = 56.2 bits (134), Expect = 3e-08
Identities = 52/167 (31%), Positives = 68/167 (40%), Gaps = 29/167 (17%)
Query: 123 EKGECGVPWR---EGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQ 179
EK CGVP + + P+ G PGE G G P EGG PG+
Sbjct: 1820 EKACCGVPCKCSGQRGDRGPIGSIGPKGIPGEDGYRGYPGDEGG-------------PGE 1866
Query: 180 KGECGVPWREGGVWRPLER--RGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKG 237
+G GV +G P +R +GS PGEKGE G +G ++ PG G
Sbjct: 1867 RGPPGVNGTQGFQGCPGQRGVKGSRGFPGEKGEVGEIGLDGLDGEDGDK----GLPGSSG 1922
Query: 238 ECGVPWREGAVWRPLDRRGSVASPGEKGECGVRWREGRVWYSLDKRG 284
E G P R G +G GE+G+ G+R G +RG
Sbjct: 1923 EKGNPGRRGD-------KGPRGEKGERGDVGIRGDPGNPGQDSQERG 1962
Score = 55.8 bits (133), Expect = 5e-08
Identities = 62/205 (30%), Positives = 81/205 (39%), Gaps = 30/205 (14%)
Query: 78 RPLR----SIDGE-AGHSEAAGEKGECGIPWT-EGQVWRPLERRASVASPGEKGECGVPW 131
RPLR +D E A + EK CG+P GQ R G G G+P
Sbjct: 1798 RPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQ-------RGDRGPIGSIGPKGIPG 1850
Query: 132 REGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLER--RASVASPGQKGECGVPWRE 189
+G P D G PGE+G GV +G P +R + S PG+KGE G E
Sbjct: 1851 EDGYRGYPGDEGG----PGERGPPGVNGTQGFQGCPGQRGVKGSRGFPGEKGEVG----E 1902
Query: 190 GGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVW 249
G+ G PG GE G P R G + G++G+ G+ G
Sbjct: 1903 IGLDGLDGEDGDKGLPGSSGEKGNPGRRGD-------KGPRGEKGERGDVGIRGDPGNPG 1955
Query: 250 RPLDRRGSVASPGEKGECGVRWREG 274
+ RG G+ G GV R+G
Sbjct: 1956 QDSQERGPKGETGDLGPMGVPGRDG 1980
>gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo
sapiens]
Length = 3177
Score = 68.9 bits (167), Expect = 5e-12
Identities = 58/202 (28%), Positives = 79/202 (39%), Gaps = 29/202 (14%)
Query: 85 GEAGHSEAAGEKGECGIPWTEGQVWRPLER--RASVASPGEKGECGVPWREGRVWRPLDR 142
GE G GE G+ G+P + G+ P R + GE+G+ G+ G +
Sbjct: 2107 GEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQDSQE 2166
Query: 143 RGSVASPGEKGECGVPWREGGVWRPLE--------RRASVASPGQKGECGVPWREGGVWR 194
RG G+ G GVP R+G P E RR + G KG G P EG
Sbjct: 2167 RGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEG---- 2222
Query: 195 PLERRGSVASPGEKGECGVPWREGR--VWRPLERRASVASPGQKGECGVPWREGAVWRPL 252
+G+ + G G G P G + P + +PG++G G PL
Sbjct: 2223 ---EQGTRGAQGPAGPAGPPGLIGEQGISGPRGSGGAAGAPGERGRTG----------PL 2269
Query: 253 DRRGSVASPGEKGECGVRWREG 274
R+G PG KG G R G
Sbjct: 2270 GRKGEPGEPGPKGGIGNRGPRG 2291
Score = 65.9 bits (159), Expect = 4e-11
Identities = 56/194 (28%), Positives = 78/194 (40%), Gaps = 26/194 (13%)
Query: 85 GEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGRVWRP----- 139
G+ G GE+G+ GI G + + R G+ G GVP R+G P
Sbjct: 2137 GDKGPRGEKGERGDVGIRGDPGNPGQDSQERGPKGETGDLGPMGVPGRDGVPGGPGETGK 2196
Query: 140 ---LDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPW--REGGVWR 194
RRG + G KG G P EG + + + G G G P E G+
Sbjct: 2197 NGGFGRRGPPGAKGNKGGPGQPGFEG-------EQGTRGAQGPAGPAGPPGLIGEQGISG 2249
Query: 195 PLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWRPLDR 254
P G+ +PGE+G G R+G P + + + G +GE G R+G
Sbjct: 2250 PRGSGGAAGAPGERGRTGPLGRKGEPGEP-GPKGGIGNRGPRGETGDDGRDGV------- 2301
Query: 255 RGSVASPGEKGECG 268
GS G+KGE G
Sbjct: 2302 -GSEGRRGKKGERG 2314
Score = 59.7 bits (143), Expect = 3e-09
Identities = 57/193 (29%), Positives = 73/193 (37%), Gaps = 30/193 (15%)
Query: 85 GEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGRVWRPLDR-- 142
G+ G G G GIP +G P + PGE+G GV +G P R
Sbjct: 2038 GQRGDRGPIGSIGPKGIPGEDGYRGYPGDE----GGPGERGPPGVNGTQGFQGCPGQRGV 2093
Query: 143 RGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGGVWRPLERRGSV 202
+GS PGEKGE G +G ++ PG GE G P R G +G
Sbjct: 2094 KGSRGFPGEKGEVGEIGLDGLDGEDGDK----GLPGSSGEKGNPGRRGD-------KGPR 2142
Query: 203 ASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWRPLDRRGSVASPG 262
GE+G+ G+ G + + R G G GVP R+G PG
Sbjct: 2143 GEKGERGDVGIRGDPGNPGQDSQERGPKGETGDLGPMGVPGRDGV-------------PG 2189
Query: 263 EKGECGVRWREGR 275
GE G GR
Sbjct: 2190 GPGETGKNGGFGR 2202
Score = 56.2 bits (134), Expect = 3e-08
Identities = 52/167 (31%), Positives = 68/167 (40%), Gaps = 29/167 (17%)
Query: 123 EKGECGVPWR---EGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQ 179
EK CGVP + + P+ G PGE G G P EGG PG+
Sbjct: 2026 EKACCGVPCKCSGQRGDRGPIGSIGPKGIPGEDGYRGYPGDEGG-------------PGE 2072
Query: 180 KGECGVPWREGGVWRPLER--RGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKG 237
+G GV +G P +R +GS PGEKGE G +G ++ PG G
Sbjct: 2073 RGPPGVNGTQGFQGCPGQRGVKGSRGFPGEKGEVGEIGLDGLDGEDGDK----GLPGSSG 2128
Query: 238 ECGVPWREGAVWRPLDRRGSVASPGEKGECGVRWREGRVWYSLDKRG 284
E G P R G +G GE+G+ G+R G +RG
Sbjct: 2129 EKGNPGRRGD-------KGPRGEKGERGDVGIRGDPGNPGQDSQERG 2168
Score = 55.8 bits (133), Expect = 5e-08
Identities = 62/205 (30%), Positives = 81/205 (39%), Gaps = 30/205 (14%)
Query: 78 RPLR----SIDGE-AGHSEAAGEKGECGIPWT-EGQVWRPLERRASVASPGEKGECGVPW 131
RPLR +D E A + EK CG+P GQ R G G G+P
Sbjct: 2004 RPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQ-------RGDRGPIGSIGPKGIPG 2056
Query: 132 REGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLER--RASVASPGQKGECGVPWRE 189
+G P D G PGE+G GV +G P +R + S PG+KGE G E
Sbjct: 2057 EDGYRGYPGDEGG----PGERGPPGVNGTQGFQGCPGQRGVKGSRGFPGEKGEVG----E 2108
Query: 190 GGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVW 249
G+ G PG GE G P R G + G++G+ G+ G
Sbjct: 2109 IGLDGLDGEDGDKGLPGSSGEKGNPGRRGD-------KGPRGEKGERGDVGIRGDPGNPG 2161
Query: 250 RPLDRRGSVASPGEKGECGVRWREG 274
+ RG G+ G GV R+G
Sbjct: 2162 QDSQERGPKGETGDLGPMGVPGRDG 2186
>gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo
sapiens]
Length = 2570
Score = 68.9 bits (167), Expect = 5e-12
Identities = 58/202 (28%), Positives = 79/202 (39%), Gaps = 29/202 (14%)
Query: 85 GEAGHSEAAGEKGECGIPWTEGQVWRPLER--RASVASPGEKGECGVPWREGRVWRPLDR 142
GE G GE G+ G+P + G+ P R + GE+G+ G+ G +
Sbjct: 1500 GEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQDSQE 1559
Query: 143 RGSVASPGEKGECGVPWREGGVWRPLE--------RRASVASPGQKGECGVPWREGGVWR 194
RG G+ G GVP R+G P E RR + G KG G P EG
Sbjct: 1560 RGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEG---- 1615
Query: 195 PLERRGSVASPGEKGECGVPWREGR--VWRPLERRASVASPGQKGECGVPWREGAVWRPL 252
+G+ + G G G P G + P + +PG++G G PL
Sbjct: 1616 ---EQGTRGAQGPAGPAGPPGLIGEQGISGPRGSGGAAGAPGERGRTG----------PL 1662
Query: 253 DRRGSVASPGEKGECGVRWREG 274
R+G PG KG G R G
Sbjct: 1663 GRKGEPGEPGPKGGIGNRGPRG 1684
Score = 65.9 bits (159), Expect = 4e-11
Identities = 56/194 (28%), Positives = 78/194 (40%), Gaps = 26/194 (13%)
Query: 85 GEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGRVWRP----- 139
G+ G GE+G+ GI G + + R G+ G GVP R+G P
Sbjct: 1530 GDKGPRGEKGERGDVGIRGDPGNPGQDSQERGPKGETGDLGPMGVPGRDGVPGGPGETGK 1589
Query: 140 ---LDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPW--REGGVWR 194
RRG + G KG G P EG + + + G G G P E G+
Sbjct: 1590 NGGFGRRGPPGAKGNKGGPGQPGFEG-------EQGTRGAQGPAGPAGPPGLIGEQGISG 1642
Query: 195 PLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWRPLDR 254
P G+ +PGE+G G R+G P + + + G +GE G R+G
Sbjct: 1643 PRGSGGAAGAPGERGRTGPLGRKGEPGEP-GPKGGIGNRGPRGETGDDGRDGV------- 1694
Query: 255 RGSVASPGEKGECG 268
GS G+KGE G
Sbjct: 1695 -GSEGRRGKKGERG 1707
Score = 59.7 bits (143), Expect = 3e-09
Identities = 57/193 (29%), Positives = 73/193 (37%), Gaps = 30/193 (15%)
Query: 85 GEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGRVWRPLDR-- 142
G+ G G G GIP +G P + PGE+G GV +G P R
Sbjct: 1431 GQRGDRGPIGSIGPKGIPGEDGYRGYPGDE----GGPGERGPPGVNGTQGFQGCPGQRGV 1486
Query: 143 RGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGGVWRPLERRGSV 202
+GS PGEKGE G +G ++ PG GE G P R G +G
Sbjct: 1487 KGSRGFPGEKGEVGEIGLDGLDGEDGDK----GLPGSSGEKGNPGRRGD-------KGPR 1535
Query: 203 ASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWRPLDRRGSVASPG 262
GE+G+ G+ G + + R G G GVP R+G PG
Sbjct: 1536 GEKGERGDVGIRGDPGNPGQDSQERGPKGETGDLGPMGVPGRDGV-------------PG 1582
Query: 263 EKGECGVRWREGR 275
GE G GR
Sbjct: 1583 GPGETGKNGGFGR 1595
Score = 56.2 bits (134), Expect = 3e-08
Identities = 52/167 (31%), Positives = 68/167 (40%), Gaps = 29/167 (17%)
Query: 123 EKGECGVPWR---EGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQ 179
EK CGVP + + P+ G PGE G G P EGG PG+
Sbjct: 1419 EKACCGVPCKCSGQRGDRGPIGSIGPKGIPGEDGYRGYPGDEGG-------------PGE 1465
Query: 180 KGECGVPWREGGVWRPLER--RGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKG 237
+G GV +G P +R +GS PGEKGE G +G ++ PG G
Sbjct: 1466 RGPPGVNGTQGFQGCPGQRGVKGSRGFPGEKGEVGEIGLDGLDGEDGDK----GLPGSSG 1521
Query: 238 ECGVPWREGAVWRPLDRRGSVASPGEKGECGVRWREGRVWYSLDKRG 284
E G P R G +G GE+G+ G+R G +RG
Sbjct: 1522 EKGNPGRRGD-------KGPRGEKGERGDVGIRGDPGNPGQDSQERG 1561
Score = 55.8 bits (133), Expect = 5e-08
Identities = 62/205 (30%), Positives = 81/205 (39%), Gaps = 30/205 (14%)
Query: 78 RPLR----SIDGE-AGHSEAAGEKGECGIPWT-EGQVWRPLERRASVASPGEKGECGVPW 131
RPLR +D E A + EK CG+P GQ R G G G+P
Sbjct: 1397 RPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQ-------RGDRGPIGSIGPKGIPG 1449
Query: 132 REGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLER--RASVASPGQKGECGVPWRE 189
+G P D G PGE+G GV +G P +R + S PG+KGE G E
Sbjct: 1450 EDGYRGYPGDEGG----PGERGPPGVNGTQGFQGCPGQRGVKGSRGFPGEKGEVG----E 1501
Query: 190 GGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVW 249
G+ G PG GE G P R G + G++G+ G+ G
Sbjct: 1502 IGLDGLDGEDGDKGLPGSSGEKGNPGRRGD-------KGPRGEKGERGDVGIRGDPGNPG 1554
Query: 250 RPLDRRGSVASPGEKGECGVRWREG 274
+ RG G+ G GV R+G
Sbjct: 1555 QDSQERGPKGETGDLGPMGVPGRDG 1579
>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 68.9 bits (167), Expect = 5e-12
Identities = 64/214 (29%), Positives = 91/214 (42%), Gaps = 27/214 (12%)
Query: 71 PGSVPAPRPLRSIDGEAGHSE--AAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECG 128
P +P P+ LR G+ G A G KG G+ G V P G+ G G
Sbjct: 227 PKGLPGPQGLRGPKGDKGFGMPGAPGVKGPPGMHGPPGPVGLP--------GVGKPGVTG 278
Query: 129 VPWREGRVWRPLDRRGSVASPGEKGECGVPWREG-----GVWRPLER--RASVASPGQKG 181
P +G PL + G+ PG +G GVP +G G+ +P + PG KG
Sbjct: 279 FPGPQG----PLGKPGAPGEPGPQGPIGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKG 334
Query: 182 ECGVPWREGGVWRP-LERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECG 240
E G+P G P + + G G++G GVP G P + + +PG G G
Sbjct: 335 EQGLPGLPGPPGLPGIGKPGFPGPKGDRGMGGVPGALG----PRGEKGPIGAPGIGGPPG 390
Query: 241 VPWREGAVWRPLDRRGSVASPGEKGECGVRWREG 274
P G + P+ G++ PG KGE G+ +G
Sbjct: 391 EPGLPG-IPGPMGPPGAIGFPGPKGEGGIVGPQG 423
Score = 58.5 bits (140), Expect = 7e-09
Identities = 57/185 (30%), Positives = 76/185 (41%), Gaps = 16/185 (8%)
Query: 84 DGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASP-GEKGECGVPWREGRVWRPLDR 142
DG G G KGE G+P G P + P G++G GVP G P
Sbjct: 321 DGIPGQPGFPGGKGEQGLPGLPGPPGLPGIGKPGFPGPKGDRGMGGVPGALG----PRGE 376
Query: 143 RGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGGVWRPLERRGSV 202
+G + +PG G G P G + P+ ++ PG KGE GG+ P G
Sbjct: 377 KGPIGAPGIGGPPGEPGLPG-IPGPMGPPGAIGFPGPKGE-------GGIVGPQGPPGPK 428
Query: 203 ASPGEKGECGVPWREGRVWRPLER--RASVASPGQKGECGVPWREGAVWRPLDRRGSVAS 260
PG +G G P G V P R + G+ G+ GVP G V L +G
Sbjct: 429 GEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVPGLPG-VPGLLGPKGEPGI 487
Query: 261 PGEKG 265
PG++G
Sbjct: 488 PGDQG 492
Score = 56.6 bits (135), Expect = 3e-08
Identities = 65/228 (28%), Positives = 83/228 (36%), Gaps = 39/228 (17%)
Query: 70 KPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQ--------VWRPLERRASVASP 121
KPG P P+ R + G G GEKG G P G + P+ ++ P
Sbjct: 352 KPG-FPGPKGDRGMGGVPGALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMGPPGAIGFP 410
Query: 122 GEKGECGVPWREGRVWRPLDR--RGSVASPGEKGECGVPWREG--GVWRPLERRASVASP 177
G KGE G+ +G + +G PG GE G P G G P P
Sbjct: 411 GPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVP 470
Query: 178 G---------QKGECGVPWREG--------GVWRPLERRGSVASPGEKGECGVPWREGRV 220
G KGE G+P +G G+ P G PG KGE G+P G
Sbjct: 471 GLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIGGPSGPIGPPGIPGPKGEPGLPGPPG-- 528
Query: 221 WRPLERRASVASPGQKGECGVPWREGAVWRPLDRRGSVASPGEKGECG 268
+ PG G G P + GA+ P + G PG G G
Sbjct: 529 ------FPGIGKPGVAGLHGPPGKPGAL-GPQGQPGLPGPPGPPGPPG 569
Score = 46.6 bits (109), Expect = 3e-05
Identities = 44/147 (29%), Positives = 58/147 (39%), Gaps = 16/147 (10%)
Query: 70 KPGSVP--APRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGEC 127
KPG + P +R + G G AG+KG G+P G L + PG++G
Sbjct: 439 KPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVPGLPGVPGL----LGPKGEPGIPGDQGLQ 494
Query: 128 GVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPW 187
G P G + P G PG KGE G+P G + PG G G P
Sbjct: 495 GPPGIPG-IGGPSGPIGPPGIPGPKGEPGLPGPPG--------FPGIGKPGVAGLHGPPG 545
Query: 188 REGGVWRPLERRGSVASPGEKGECGVP 214
+ G + P + G PG G G P
Sbjct: 546 KPGAL-GPQGQPGLPGPPGPPGPPGPP 571
>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 68.9 bits (167), Expect = 5e-12
Identities = 64/214 (29%), Positives = 91/214 (42%), Gaps = 27/214 (12%)
Query: 71 PGSVPAPRPLRSIDGEAGHSE--AAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECG 128
P +P P+ LR G+ G A G KG G+ G V P G+ G G
Sbjct: 227 PKGLPGPQGLRGPKGDKGFGMPGAPGVKGPPGMHGPPGPVGLP--------GVGKPGVTG 278
Query: 129 VPWREGRVWRPLDRRGSVASPGEKGECGVPWREG-----GVWRPLER--RASVASPGQKG 181
P +G PL + G+ PG +G GVP +G G+ +P + PG KG
Sbjct: 279 FPGPQG----PLGKPGAPGEPGPQGPIGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKG 334
Query: 182 ECGVPWREGGVWRP-LERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECG 240
E G+P G P + + G G++G GVP G P + + +PG G G
Sbjct: 335 EQGLPGLPGPPGLPGIGKPGFPGPKGDRGMGGVPGALG----PRGEKGPIGAPGIGGPPG 390
Query: 241 VPWREGAVWRPLDRRGSVASPGEKGECGVRWREG 274
P G + P+ G++ PG KGE G+ +G
Sbjct: 391 EPGLPG-IPGPMGPPGAIGFPGPKGEGGIVGPQG 423
Score = 58.5 bits (140), Expect = 7e-09
Identities = 57/185 (30%), Positives = 76/185 (41%), Gaps = 16/185 (8%)
Query: 84 DGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASP-GEKGECGVPWREGRVWRPLDR 142
DG G G KGE G+P G P + P G++G GVP G P
Sbjct: 321 DGIPGQPGFPGGKGEQGLPGLPGPPGLPGIGKPGFPGPKGDRGMGGVPGALG----PRGE 376
Query: 143 RGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGGVWRPLERRGSV 202
+G + +PG G G P G + P+ ++ PG KGE GG+ P G
Sbjct: 377 KGPIGAPGIGGPPGEPGLPG-IPGPMGPPGAIGFPGPKGE-------GGIVGPQGPPGPK 428
Query: 203 ASPGEKGECGVPWREGRVWRPLER--RASVASPGQKGECGVPWREGAVWRPLDRRGSVAS 260
PG +G G P G V P R + G+ G+ GVP G V L +G
Sbjct: 429 GEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVPGLPG-VPGLLGPKGEPGI 487
Query: 261 PGEKG 265
PG++G
Sbjct: 488 PGDQG 492
Score = 56.6 bits (135), Expect = 3e-08
Identities = 65/228 (28%), Positives = 83/228 (36%), Gaps = 39/228 (17%)
Query: 70 KPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQ--------VWRPLERRASVASP 121
KPG P P+ R + G G GEKG G P G + P+ ++ P
Sbjct: 352 KPG-FPGPKGDRGMGGVPGALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMGPPGAIGFP 410
Query: 122 GEKGECGVPWREGRVWRPLDR--RGSVASPGEKGECGVPWREG--GVWRPLERRASVASP 177
G KGE G+ +G + +G PG GE G P G G P P
Sbjct: 411 GPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVP 470
Query: 178 G---------QKGECGVPWREG--------GVWRPLERRGSVASPGEKGECGVPWREGRV 220
G KGE G+P +G G+ P G PG KGE G+P G
Sbjct: 471 GLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIGGPSGPIGPPGIPGPKGEPGLPGPPG-- 528
Query: 221 WRPLERRASVASPGQKGECGVPWREGAVWRPLDRRGSVASPGEKGECG 268
+ PG G G P + GA+ P + G PG G G
Sbjct: 529 ------FPGIGKPGVAGLHGPPGKPGAL-GPQGQPGLPGPPGPPGPPG 569
Score = 46.6 bits (109), Expect = 3e-05
Identities = 44/147 (29%), Positives = 58/147 (39%), Gaps = 16/147 (10%)
Query: 70 KPGSVP--APRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGEC 127
KPG + P +R + G G AG+KG G+P G L + PG++G
Sbjct: 439 KPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVPGLPGVPGL----LGPKGEPGIPGDQGLQ 494
Query: 128 GVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPW 187
G P G + P G PG KGE G+P G + PG G G P
Sbjct: 495 GPPGIPG-IGGPSGPIGPPGIPGPKGEPGLPGPPG--------FPGIGKPGVAGLHGPPG 545
Query: 188 REGGVWRPLERRGSVASPGEKGECGVP 214
+ G + P + G PG G G P
Sbjct: 546 KPGAL-GPQGQPGLPGPPGPPGPPGPP 571
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 68.6 bits (166), Expect = 7e-12
Identities = 68/218 (31%), Positives = 87/218 (39%), Gaps = 32/218 (14%)
Query: 70 KPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASP-GEKGECG 128
+PG P P R DGE G G G+ G+P G+ R L V P GEKG+ G
Sbjct: 1620 RPGP-PGPVGPRGRDGEVGEKGDEGPPGDPGLPGKAGE--RGLRGAPGVRGPVGEKGDQG 1676
Query: 129 VPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPG--QKGECGVP 186
P +G R GS S G KG+ G P G R ++ PG +KGE G
Sbjct: 1677 DPGEDG-------RNGSPGSSGPKGDRGEPGPPGPPGRLVD-----TGPGAREKGEPGDR 1724
Query: 187 WREGGVWRPLERRGSVASPGEKGECGV--------PWREGRVWRPLERRASVASPGQKGE 238
+EG P +G PG GE G+ P + V P + PG G
Sbjct: 1725 GQEG----PRGPKGDPGLPGAPGERGIEGFRGPPGPQGDPGVRGPAGEKGDRGPPGLDGR 1780
Query: 239 CGVPWREGAVW--RPLDRRGSVASPGEKGECGVRWREG 274
G+ + GA P G PG G G+R +G
Sbjct: 1781 SGLDGKPGAAGPSGPNGAAGKAGDPGRDGLPGLRGEQG 1818
Score = 66.2 bits (160), Expect = 3e-11
Identities = 68/214 (31%), Positives = 83/214 (38%), Gaps = 26/214 (12%)
Query: 75 PAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREG 134
P P L G G GE G+ G P +G + +R SPG G G+P G
Sbjct: 2232 PGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGDR----GSPGVPGSPGLPGPVG 2287
Query: 135 RVWRP----LDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREG 190
P + V PG KGE G P GG+ L V PG KG+ G+P G
Sbjct: 2288 PKGEPGPTGAPGQAVVGLPGAKGEKGAP---GGLAGDL-----VGEPGAKGDRGLPGPRG 2339
Query: 191 GVWRPLERRGSVASPGEKGECGVPWREGRVWRP----LERRASVASPGQKGECGVPWREG 246
R G PGE G+ G P +G P PG KG+ G+P G
Sbjct: 2340 EKGE-AGRAGEPGDPGEDGQKGAPGPKGFKGDPGVGVPGSPGPPGPPGVKGDLGLPGLPG 2398
Query: 247 A---VWRP--LDRRGSVASPGEKGECGVRWREGR 275
A V P RG + PG GE G+ GR
Sbjct: 2399 APGVVGFPGQTGPRGEMGQPGPSGERGLAGPPGR 2432
Score = 65.9 bits (159), Expect = 4e-11
Identities = 62/202 (30%), Positives = 79/202 (39%), Gaps = 22/202 (10%)
Query: 84 DGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPG--EKGECGVPWREGRVWRPLD 141
DG G ++G KG+ G P G R ++ PG EKGE G +EG P
Sbjct: 1681 DGRNGSPGSSGPKGDRGEPGPPGPPGRLVD-----TGPGAREKGEPGDRGQEG----PRG 1731
Query: 142 RRGSVASPGEKGECGV--------PWREGGVWRPLERRASVASPGQKGECGVPWREGGVW 193
+G PG GE G+ P + GV P + PG G G+ + G
Sbjct: 1732 PKGDPGLPGAPGERGIEGFRGPPGPQGDPGVRGPAGEKGDRGPPGLDGRSGLDGKPGAA- 1790
Query: 194 RPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWRPLD 253
P G+ G+ G G+P G P PG+ GE G P G P D
Sbjct: 1791 GPSGPNGAAGKAGDPGRDGLPGLRGEQGLP-GPSGPPGLPGKPGEDGKPGLNGKNGEPGD 1849
Query: 254 RRGSVASPGEKGECGVRWREGR 275
G GEKG+ G REGR
Sbjct: 1850 -PGEDGRKGEKGDSGASGREGR 1870
Score = 65.1 bits (157), Expect = 7e-11
Identities = 74/251 (29%), Positives = 91/251 (36%), Gaps = 51/251 (20%)
Query: 67 LSAKPGS-----VPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASP 121
L +PG+ +P PR + G AG GE G+ G P +G P V P
Sbjct: 2322 LVGEPGAKGDRGLPGPRGEKGEAGRAGEPGDPGEDGQKGAPGPKGFKGDP-----GVGVP 2376
Query: 122 GEKGECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKG 181
G G G P +G + P PG G G P + G P G++G
Sbjct: 2377 GSPGPPGPPGVKGDLGLP-------GLPGAPGVVGFPGQTG----PRGEMGQPGPSGERG 2425
Query: 182 ECGVPWREG--GVWRPLERRGSVASPGE---KGECGVPWREGRVWRPLERRASVASPGQK 236
G P REG G P GSV PG KG+ G P V PG +
Sbjct: 2426 LAGPPGREGIPGPLGPPGPPGSVGPPGASGLKGDKGDP--------------GVGLPGPR 2471
Query: 237 GECGVPWREGAVWRPLDR--RGSVASPGEKGECGVRWREGRVWYSLDKRGSVPAALASQR 294
GE G P G RP RG PG +GE G + G DK S
Sbjct: 2472 GERGEPGIRGEDGRPGQEGPRGLTGPPGSRGERGEKGDVGSAGLKGDKGDSA-------- 2523
Query: 295 HALLALPQPQG 305
+L P P+G
Sbjct: 2524 -VILGPPGPRG 2533
Score = 64.7 bits (156), Expect = 1e-10
Identities = 63/226 (27%), Positives = 88/226 (38%), Gaps = 27/226 (11%)
Query: 70 KPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQ---VWRPLERRASVASPGEKGE 126
+PG PR L G G G+ G G+ +G + P R + GE+G
Sbjct: 2485 RPGQ-EGPRGLTGPPGSRGERGEKGDVGSAGLKGDKGDSAVILGPPGPRGAKGDMGERGP 2543
Query: 127 CGVPWREGRVWRPLDR--RGSVASPGEKGECGVPWREGGVWRPLERRAS--VASPGQKGE 182
G+ +G D +GS PG+KG G+P G + + A+ PG G+
Sbjct: 2544 RGLDGDKGPRGDNGDPGDKGSKGEPGDKGSAGLPGLRGLLGPQGQPGAAGIPGDPGSPGK 2603
Query: 183 CGVPWREG-----GVWRPLERRGS---------VASPGEKGECGVPWREGRVWRPLERRA 228
GVP G G P +G G+KGE G P R G +
Sbjct: 2604 DGVPGIRGEKGDVGFMGPRGLKGERGVKGACGLDGEKGDKGEAGPPGRPGLA----GHKG 2659
Query: 229 SVASPGQKGECGVPWREGAVWRPLDRRGSVASPGEKGECGVRWREG 274
+ PG G+ G P +EG + P RG PG KG+ G + G
Sbjct: 2660 EMGEPGVPGQSGAPGKEGLI-GPKGDRGFDGQPGPKGDQGEKGERG 2704
Score = 63.9 bits (154), Expect = 2e-10
Identities = 73/236 (30%), Positives = 89/236 (37%), Gaps = 45/236 (19%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASP--------- 121
PG P+ R G G GE+G G P + V R LE AS
Sbjct: 1906 PGGT-GPKGDRGETGSKGEQGLPGERGLRGEPGSVPNVDRLLETAGIKASALREIVETWD 1964
Query: 122 -----------------GEKGECGVPWREGRVWRPLDR--RGSVASPGEKGECGVPWREG 162
G+ GE G P +EG + P +R +G PG +G G+ E
Sbjct: 1965 ESSGSFLPVPERRRGPKGDSGEQGPPGKEGPIGFPGERGLKGDRGDPGPQGPPGLALGER 2024
Query: 163 GVWRPLERRASVASPGQKGECGVPWREGGV---WRPLER--RGSVASPGEKGECGVPWRE 217
G P PG+ G G+P R GGV RP ER RG GE+G G P
Sbjct: 2025 G---PPGPSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLP 2081
Query: 218 GRVWRPLERRASVA----SPGQKGECGVPWREGAVWRPLDRRGSVASPGEKGECGV 269
G P V+ PG GE G P +GA P GS G KG+ GV
Sbjct: 2082 GTPGPPGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEP----GSNGDQGPKGDRGV 2133
Score = 63.5 bits (153), Expect = 2e-10
Identities = 61/202 (30%), Positives = 83/202 (41%), Gaps = 21/202 (10%)
Query: 77 PRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREGR- 135
P L+ GE G + G KG+ G+P +G P R +PG GE G+ EG+
Sbjct: 2109 PPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEP-GPRGQDGNPGLPGERGMAGPEGKP 2167
Query: 136 -VWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREGGVWR 194
+ P G V G+ G G P G+ P + G+ GE G P R G+
Sbjct: 2168 GLQGPRGPPGPVGGHGDPGPPGAP----GLAGPAGPQGPSGLKGEPGETGPPGR--GLTG 2221
Query: 195 PLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWRPLDR 254
P G+V PG G G+ +G P G+ G+ G P R+GA + DR
Sbjct: 2222 P---TGAVGLPGPPGPSGLVGPQGSPGLP-------GQVGETGKPGAPGRDGASGKDGDR 2271
Query: 255 --RGSVASPGEKGECGVRWREG 274
G SPG G G + G
Sbjct: 2272 GSPGVPGSPGLPGPVGPKGEPG 2293
Score = 61.2 bits (147), Expect = 1e-09
Identities = 62/212 (29%), Positives = 83/212 (39%), Gaps = 33/212 (15%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGE--CGIPWTEGQVWRPLERRASVASPGEKGECG 128
PG + P P S+ G G S G+KG+ G+P G+ PG +GE G
Sbjct: 2436 PGPLGPPGPPGSV-GPPGASGLKGDKGDPGVGLPGPRGER----------GEPGIRGEDG 2484
Query: 129 VPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWR 188
P +EG P G S GE+GE G G + + PG +G G
Sbjct: 2485 RPGQEG----PRGLTGPPGSRGERGEKGDVGSAGLKGDKGDSAVILGPPGPRGAKGDMGE 2540
Query: 189 EG--GVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREG 246
G G+ RG PG+KG G P +G P R + GQ G G+P
Sbjct: 2541 RGPRGLDGDKGPRGDNGDPGDKGSKGEPGDKGSAGLP-GLRGLLGPQGQPGAAGIP---- 2595
Query: 247 AVWRPLDRRGSVASPGEKGECGVRWREGRVWY 278
G SPG+ G G+R +G V +
Sbjct: 2596 ---------GDPGSPGKDGVPGIRGEKGDVGF 2618
Score = 60.1 bits (144), Expect = 2e-09
Identities = 70/234 (29%), Positives = 92/234 (39%), Gaps = 26/234 (11%)
Query: 47 GAQPREDQMGSVEKLTTSAFLSAK-PGSVPAP--RPLRSIDGEAGHSEAAGEKGECGIPW 103
GA RE + G + L + P +P P P + G G + G++GE G
Sbjct: 1863 GASGREGRDGPKGERGAPGILGPQGPPGLPGPVGPPGQGFPGVPGGTGPKGDRGETGSKG 1922
Query: 104 TEGQVWRPLERRASVASPGEKGECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREG- 162
+G PGE+G G P V R L+ G AS E W E
Sbjct: 1923 EQGL-------------PGERGLRGEPGSVPNVDRLLETAGIKASALR--EIVETWDESS 1967
Query: 163 GVWRPLERRASVASPGQKGECGVPWREGGVWRPLER--RGSVASPGEKGECGVPWREGRV 220
G + P+ R G GE G P +EG + P ER +G PG +G G+ E
Sbjct: 1968 GSFLPVPERRR-GPKGDSGEQGPPGKEGPIGFPGERGLKGDRGDPGPQGPPGLALGERG- 2025
Query: 221 WRPLERRASVASPGQKGECGVPWREGAVWRPLDRRGSVASPGEKGECGVRWREG 274
P PG+ G G+P R G V R G GEKGE G + R+G
Sbjct: 2026 --PPGPSGLAGEPGKPGIPGLPGRAGGVGEA-GRPGERGERGEKGERGEQGRDG 2076
Score = 59.3 bits (142), Expect = 4e-09
Identities = 68/216 (31%), Positives = 86/216 (39%), Gaps = 39/216 (18%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVP 130
PG AP P G +A KGE G P +G+ P R + +PG G G P
Sbjct: 1277 PGRTGAPGP-------QGPPGSATAKGERGFPGADGRPGSP-GRAGNPGTPGAPGLKGSP 1328
Query: 131 WREGRVWRPLDR--RGSVASPGEKGEC------GVPWREG--GVWRPLERRASVASPGQK 180
G P +R RG PG G+ G+P R+G G P R + PG +
Sbjct: 1329 GLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPR 1388
Query: 181 GECGVPWR--------EGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVAS 232
G G+P G P G +A PGE G G+P G + V
Sbjct: 1389 GPPGLPGTAMKGDKGDRGERGPPGPGEGGIA-PGEPGLPGLPGSPG-------PQGPVGP 1440
Query: 233 PGQKGECGVPWREGAVWRPLDRRGSVASPGEKGECG 268
PG+KGE G +GA P G SPGE+G G
Sbjct: 1441 PGKKGEKG-DSEDGAPGLP----GQPGSPGEQGPRG 1471
Score = 58.2 bits (139), Expect = 9e-09
Identities = 68/228 (29%), Positives = 82/228 (35%), Gaps = 39/228 (17%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKG--ECGIPWTEGQVWRPLER--RASVASPGEKGE 126
PG +P P G G GEKG E G P GQ P E+ R + G KG+
Sbjct: 1426 PGLPGSPGP----QGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGD 1481
Query: 127 CGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRP-LERRASVASP-------G 178
G P G + GEKGE G P G P + R P G
Sbjct: 1482 RGFP-------------GPLGEAGEKGERGPPGPAGSRGLPGVAGRPGAKGPEGPPGPTG 1528
Query: 179 QKGECGVPWREG-------GVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASV- 230
++GE G P R G V P +G V G +G GV G L
Sbjct: 1529 RQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPPGLVLPGDPGPK 1588
Query: 231 ASPGQKGECGVPWREGAVWR--PLDRRGSVASPGEKGECGVRWREGRV 276
PG +G G+ R G P +G PG G G R R+G V
Sbjct: 1589 GDPGDRGPIGLTGRAGPPGDSGPPGEKGDPGRPGPPGPVGPRGRDGEV 1636
Score = 41.6 bits (96), Expect = 9e-04
Identities = 48/170 (28%), Positives = 59/170 (34%), Gaps = 34/170 (20%)
Query: 68 SAKPGS--VPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKG 125
S PG + P+ R DG+ G GEKGE G P G G G
Sbjct: 2670 SGAPGKEGLIGPKGDRGFDGQPGPKGDQGEKGERGTPGIGG----------FPGPSGNDG 2719
Query: 126 ECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGV 185
G P G V RG G+KGE G P R + +PG++GE G
Sbjct: 2720 SAGPPGPPGSV----GPRGPEGLQGQKGERGPPGE-----RVVGAPGVPGAPGERGEQGR 2770
Query: 186 PWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQ 235
P G GEKGE + + R + E A GQ
Sbjct: 2771 P-------------GPAGPRGEKGEAALTEDDIRGFVRQEMSQHCACQGQ 2807
>gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]
Length = 1028
Score = 68.6 bits (166), Expect = 7e-12
Identities = 66/218 (30%), Positives = 82/218 (37%), Gaps = 30/218 (13%)
Query: 75 PAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVPWREG 134
P R +GE G GEKGE G P G + P+ + G +GE G +G
Sbjct: 259 PGLRGDPGFEGERGKPGLPGEKGEAGDPGRPGDL-GPVGYQGMKGEKGSRGEKGSRGPKG 317
Query: 135 RVWRPLDRRGSVASPGEKGECGVPWREG--------GVWRPLERRASVASPGQKGECGVP 186
+RG G KGE G P G G+ P + + G KGE G P
Sbjct: 318 YKGEK-GKRGIDGVDGVKGEMGYPGLPGCKGSPGFDGIQGPPGPKGDPGAFGLKGEKGEP 376
Query: 187 WREGGVWRPLE--------RRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGE 238
+G RP + G PGEKGE G G P ER PG++G
Sbjct: 377 GADGEAGRPGSSGPSGDEGQPGEPGPPGEKGEAGDEGNPGPDGAPGER----GGPGERGP 432
Query: 239 CGVPWREGAVWRPLD--------RRGSVASPGEKGECG 268
G P G P + R G V PG+ GE G
Sbjct: 433 RGTPGTRGPRGDPGEAGPQGDQGREGPVGVPGDPGEAG 470
Score = 51.6 bits (122), Expect = 9e-07
Identities = 56/183 (30%), Positives = 68/183 (37%), Gaps = 38/183 (20%)
Query: 107 QVWRPLERRASVASPGEKGECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWR 166
QV E + + PG +G+ G EG RG PGEKGE G P R G +
Sbjct: 245 QVCCSFECQPARGPPGLRGDPGF---EGE-------RGKPGLPGEKGEAGDPGRPGDL-- 292
Query: 167 PLERRASVASPGQKGECGVPWREG-----GVWRPLERRGSVASPGEKGECGVPWREG--- 218
V G KGE G +G G +RG G KGE G P G
Sbjct: 293 -----GPVGYQGMKGEKGSRGEKGSRGPKGYKGEKGKRGIDGVDGVKGEMGYPGLPGCKG 347
Query: 219 -----RVWRPLERRASVASPGQKGECGVPWREGAVWRP--------LDRRGSVASPGEKG 265
+ P + + G KGE G P +G RP + G PGEKG
Sbjct: 348 SPGFDGIQGPPGPKGDPGAFGLKGEKGEPGADGEAGRPGSSGPSGDEGQPGEPGPPGEKG 407
Query: 266 ECG 268
E G
Sbjct: 408 EAG 410
Score = 48.1 bits (113), Expect = 9e-06
Identities = 45/176 (25%), Positives = 61/176 (34%), Gaps = 20/176 (11%)
Query: 71 PGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGECGVP 130
P P R R GEAG G +G G+P G+ + G +G+ G P
Sbjct: 432 PRGTPGTRGPRGDPGEAGPQGDQGREGPVGVPGDPGEA-------GPIGPKGYRGDEGPP 484
Query: 131 WREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVPWREG 190
EG P G PG+ G G +G E PG G G P G
Sbjct: 485 GSEGARGAP----GPAGPPGDPGLMGERGEDGPAGNGTE--GFPGFPGYPGNRGAPGING 538
Query: 191 GVWRPLERRGSVASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREG 246
+G G++GE G P + P + + G +G G P +G
Sbjct: 539 -------TKGYPGLKGDEGEAGDPGDDNNDIAPRGVKGAKGYRGPEGPQGPPGHQG 587
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.135 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,600,329
Number of Sequences: 37866
Number of extensions: 919071
Number of successful extensions: 7808
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 195
Number of HSP's that attempted gapping in prelim test: 2156
Number of HSP's gapped (non-prelim): 1574
length of query: 305
length of database: 18,247,518
effective HSP length: 102
effective length of query: 203
effective length of database: 14,385,186
effective search space: 2920192758
effective search space used: 2920192758
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.