COL4A1 4478

Name: COL4A1	Sequence: fasta or formatted (1669aa)		NCBI GI: 148536825
Description: alpha 1 type IV collagen preproprotein		Referenced in: Collagen
Composition: Amino acid Percentage Count Longest homopolymer A alanine 3.5 58 3 C cysteine 1.2 20 1 D aspartate 3.5 58 2 E glutamate 4.2 70 2 F phenylalanine 2.8 46 1 G glycine 28.6 478 2 H histidine 1.0 16 1 I isoleucine 3.5 58 2 K lysine 5.6 93 2 L leucine 5.5 92 4 M methionine 1.9 31 1 N asparagine 1.0 16 2 P proline 19.4 324 2 Q glutamine 4.4 73 2 R arginine 2.7 45 2 S serine 4.3 72 2 T threonine 2.6 44 1 V valine 3.1 51 1 W tryptophan 0.4 6 1 Y tyrosine 1.1 18 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 alpha 1 type IV collagen preproprotein COL4A5 0.581 type IV collagen alpha 5 isoform 1 precursor COL4A5 0.579 type IV collagen alpha 5 isoform 3 precursor COL4A5 0.579 type IV collagen alpha 5 isoform 2 precursor COL4A3 0.459 alpha 3 type IV collagen isoform 1 precursor COL4A3 0.421 alpha 3 type IV collagen isoform 2 precursor COL4A6 0.399 type IV alpha 6 collagen isoform A precursor COL4A6 0.399 type IV alpha 6 collagen isoform B precursor COL4A3 0.376 alpha 3 type IV collagen isoform 4 precursor COL4A3 0.356 alpha 3 type IV collagen isoform 5 precursor COL4A4 0.343 alpha 4 type IV collagen precursor COL4A2 0.342 alpha 2 type IV collagen preproprotein COL7A1 0.303 alpha 1 type VII collagen precursor COL2A1 0.235 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL5A1 0.232 alpha 1 type V collagen preproprotein COL22A1 0.230 collagen, type XXII, alpha 1 COL1A1 0.230 alpha 1 type I collagen preproprotein COL16A1 0.229 alpha 1 type XVI collagen precursor COL3A1 0.229 collagen type III alpha 1 preproprotein COL2A1 0.229 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL5A2 0.228 alpha 2 type V collagen preproprotein COL11A2 0.227 collagen, type XI, alpha 2 isoform 1 preproprotein ... COL11A2 0.227 collagen, type XI, alpha 2 isoform 3 preproprotein ... COL11A1 0.227 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.227 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.227 alpha 1 type XI collagen isoform A preproprotein [Ho... COL11A2 0.226 collagen, type XI, alpha 2 isoform 2 preproprotein ... COL5A3 0.223 collagen, type V, alpha 3 preproprotein COL1A2 0.215 alpha 2 type I collagen COL27A1 0.213 collagen, type XXVII, alpha 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.