Guide to the Human Genome
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Name: LOC100128703 Sequence: fasta or formatted (389aa) NCBI GI: 239744258
Description:

PREDICTED: hypothetical protein LOC100128703

Not currently referenced in the text

Other entries for this name:
alt prot {305aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         32           2
 C cysteine            3.1         12           1
 D aspartate           2.1          8           1
 E glutamate          10.8         42           1
 F phenylalanine       0.3          1           1
 G glycine            15.7         61           2
 H histidine           0.8          3           1
 I isoleucine          1.0          4           1
 K lysine              3.6         14           1
 L leucine             4.9         19           2
 M methionine          0.5          2           1
 N asparagine          0.0          0           0
 P proline            10.0         39           2
 Q glutamine           2.6         10           1
 R arginine           12.1         47           2
 S serine              8.2         32           2
 T threonine           2.1          8           2
 V valine              8.5         33           1
 W tryptophan          5.1         20           1
 Y tyrosine            0.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC100128703 
LOC100128703          0.698   PREDICTED: hypothetical protein 
COL3A1                0.094   collagen type III alpha 1 preproprotein 
COL5A3                0.093   collagen, type V, alpha 3 preproprotein 
COL22A1               0.089   collagen, type XXII, alpha 1 
COL5A2                0.089   alpha 2 type V collagen preproprotein 
COL4A1                0.088   alpha 1 type IV collagen preproprotein 
COL5A1                0.087   alpha 1 type V collagen preproprotein 
COL11A2               0.087   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.087   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.087   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL24A1               0.087   collagen, type XXIV, alpha 1 
COL11A1               0.085   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.085   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.085   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL6A2                0.085   alpha 2 type VI collagen isoform 2C2a' precursor [H...
COL6A2                0.085   alpha 2 type VI collagen isoform 2C2a precursor [Ho...
COL6A2                0.085   alpha 2 type VI collagen isoform 2C2 precursor [Hom...
COL2A1                0.084   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.084   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL16A1               0.082   alpha 1 type XVI collagen precursor 
COL21A1               0.080   collagen, type XXI, alpha 1 precursor 
COL4A3                0.079   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.079   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.079   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.079   alpha 3 type IV collagen isoform 1 precursor 
COL6A3                0.079   alpha 3 type VI collagen isoform 5 precursor 
COL6A3                0.079   alpha 3 type VI collagen isoform 1 precursor 
COL6A3                0.079   alpha 3 type VI collagen isoform 4 precursor 
COL1A1                0.078   alpha 1 type I collagen preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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