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Search of human proteins with 239751471
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo
sapiens]
(870 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo ... 1768 0.0
gi|239745974 PREDICTED: hypothetical protein XP_002343630 [Homo ... 571 e-163
gi|48762934 alpha 2 type I collagen [Homo sapiens] 67 9e-11
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 64 6e-10
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 64 6e-10
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 60 9e-09
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 60 9e-09
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 60 9e-09
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 60 9e-09
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 58 3e-08
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 58 4e-08
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 57 6e-08
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 57 1e-07
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 56 1e-07
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s... 56 1e-07
gi|110832843 TBP-associated factor 4 [Homo sapiens] 56 2e-07
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 54 5e-07
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 54 5e-07
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 53 1e-06
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 52 2e-06
gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [H... 51 5e-06
gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho... 51 5e-06
gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Hom... 51 5e-06
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens] 50 7e-06
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens] 50 7e-06
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens] 50 9e-06
gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens] 50 1e-05
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens] 49 2e-05
gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo ... 49 3e-05
gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo ... 49 3e-05
>gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo
sapiens]
Length = 870
Score = 1768 bits (4580), Expect = 0.0
Identities = 870/870 (100%), Positives = 870/870 (100%)
Query: 1 MRTKPGCVRVRVQGRRPRFIPGEKGEKRRTKQIIAAQAGGEGGRAQPGLPCSVDLATGLE 60
MRTKPGCVRVRVQGRRPRFIPGEKGEKRRTKQIIAAQAGGEGGRAQPGLPCSVDLATGLE
Sbjct: 1 MRTKPGCVRVRVQGRRPRFIPGEKGEKRRTKQIIAAQAGGEGGRAQPGLPCSVDLATGLE 60
Query: 61 GPLGGPAVDLDVGFSPGDDIAGQSLGAAGGQVVHLPGGQLAVPDVEVGQLTHKCLGGIKP 120
GPLGGPAVDLDVGFSPGDDIAGQSLGAAGGQVVHLPGGQLAVPDVEVGQLTHKCLGGIKP
Sbjct: 61 GPLGGPAVDLDVGFSPGDDIAGQSLGAAGGQVVHLPGGQLAVPDVEVGQLTHKCLGGIKP 120
Query: 121 TTQSYLLLAQHQHALGLDGVIGRQVLATATLRAILVGLPDPVPGGPVYTTSPSLHQGEPS 180
TTQSYLLLAQHQHALGLDGVIGRQVLATATLRAILVGLPDPVPGGPVYTTSPSLHQGEPS
Sbjct: 121 TTQSYLLLAQHQHALGLDGVIGRQVLATATLRAILVGLPDPVPGGPVYTTSPSLHQGEPS 180
Query: 181 LVSEFTAASQGSVRHLCSLLAGLSSLFRCPISSCYTLSLYNTSISGSLLWRGKASSKASW 240
LVSEFTAASQGSVRHLCSLLAGLSSLFRCPISSCYTLSLYNTSISGSLLWRGKASSKASW
Sbjct: 181 LVSEFTAASQGSVRHLCSLLAGLSSLFRCPISSCYTLSLYNTSISGSLLWRGKASSKASW 240
Query: 241 WRSPDHIIGQGQAPWLVLRHLPYPPQEASGKVQLSLLSQYRPDVPLTHQCLLGVRLGSSP 300
WRSPDHIIGQGQAPWLVLRHLPYPPQEASGKVQLSLLSQYRPDVPLTHQCLLGVRLGSSP
Sbjct: 241 WRSPDHIIGQGQAPWLVLRHLPYPPQEASGKVQLSLLSQYRPDVPLTHQCLLGVRLGSSP 300
Query: 301 PPRPFLGAGTLPGALLRGQGSKELGVLWAPGLPKVTALGCRHTLSYITSLKMALFKSVRH 360
PPRPFLGAGTLPGALLRGQGSKELGVLWAPGLPKVTALGCRHTLSYITSLKMALFKSVRH
Sbjct: 301 PPRPFLGAGTLPGALLRGQGSKELGVLWAPGLPKVTALGCRHTLSYITSLKMALFKSVRH 360
Query: 361 ILRSEQGHVALLRTGHPPPSPFTTLFDFCDFKTEPPALIQAPWGVHPGQHLPLQLIDLAL 420
ILRSEQGHVALLRTGHPPPSPFTTLFDFCDFKTEPPALIQAPWGVHPGQHLPLQLIDLAL
Sbjct: 361 ILRSEQGHVALLRTGHPPPSPFTTLFDFCDFKTEPPALIQAPWGVHPGQHLPLQLIDLAL 420
Query: 421 QQILEAVGLAGGIEAAVLLRGARAGETTPLGEARGPCWKARGAVPSGRLRGRPGRVAGAS 480
QQILEAVGLAGGIEAAVLLRGARAGETTPLGEARGPCWKARGAVPSGRLRGRPGRVAGAS
Sbjct: 421 QQILEAVGLAGGIEAAVLLRGARAGETTPLGEARGPCWKARGAVPSGRLRGRPGRVAGAS 480
Query: 481 GRRGASQARGGTGRAPARLRRGRGMPGRVGNGVGEGRGASEPEGEPEPRARADLEVLQAG 540
GRRGASQARGGTGRAPARLRRGRGMPGRVGNGVGEGRGASEPEGEPEPRARADLEVLQAG
Sbjct: 481 GRRGASQARGGTGRAPARLRRGRGMPGRVGNGVGEGRGASEPEGEPEPRARADLEVLQAG 540
Query: 541 FERLQSLPELAERLGGRCPGQVAHGVLARAGLLAAAARPGLAGSGVQRALALAAAQLGGW 600
FERLQSLPELAERLGGRCPGQVAHGVLARAGLLAAAARPGLAGSGVQRALALAAAQLGGW
Sbjct: 541 FERLQSLPELAERLGGRCPGQVAHGVLARAGLLAAAARPGLAGSGVQRALALAAAQLGGW 600
Query: 601 TTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPGSFGAGLGAQGPRSSTPECPV 660
TTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPGSFGAGLGAQGPRSSTPECPV
Sbjct: 601 TTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPGSFGAGLGAQGPRSSTPECPV 660
Query: 661 VNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGAGDFSEADLAD 720
VNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGAGDFSEADLAD
Sbjct: 661 VNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGAGDFSEADLAD 720
Query: 721 RAFPVRGAGPIAGRRRRRGWTFAAALRKGAPREQPPASPAASPCQAPRAPEKETEAPRLR 780
RAFPVRGAGPIAGRRRRRGWTFAAALRKGAPREQPPASPAASPCQAPRAPEKETEAPRLR
Sbjct: 721 RAFPVRGAGPIAGRRRRRGWTFAAALRKGAPREQPPASPAASPCQAPRAPEKETEAPRLR 780
Query: 781 GRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPGCRDRASAPRAGAEA 840
GRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPGCRDRASAPRAGAEA
Sbjct: 781 GRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPGCRDRASAPRAGAEA 840
Query: 841 GSMETFLRNGGLYPPPSPRAPAVCVQHLSF 870
GSMETFLRNGGLYPPPSPRAPAVCVQHLSF
Sbjct: 841 GSMETFLRNGGLYPPPSPRAPAVCVQHLSF 870
>gi|239745974 PREDICTED: hypothetical protein XP_002343630 [Homo
sapiens]
Length = 538
Score = 571 bits (1472), Expect = e-163
Identities = 308/430 (71%), Positives = 317/430 (73%), Gaps = 36/430 (8%)
Query: 472 RPGRVAGASGRRGASQARGGTGRA--PARLRRGRGMPGRVGNGVGEGRGASEPEGEPEPR 529
RP +A +GR G AR G G PAR R G + G P R
Sbjct: 114 RPAGMAAGTGRSGPGSARLGLGSGWDPARAVAPRAARALGAALFGRAVHTAALSG-PHCR 172
Query: 530 ARADLEVLQAGFERLQSLPELAERLGGRCPGQVAHGVLARAGLLAAAARPGLA------- 582
R A S R GR P + G R G +A PGL
Sbjct: 173 LRCGARAFYAAAGGASS----RRRQRGRNPALIVRGPGPRRGGGLTSAPPGLPPLASPPP 228
Query: 583 --------------GSGV--QRALALAAAQLG------GWTTCVVSPNLRRGSRRAGNHR 620
G + +R L ++G GWTTCVVSPNLRRGSRRAGNHR
Sbjct: 229 FWELPRPPPPPPPPGPALLPRRLRELRGKEVGLRPRTRGWTTCVVSPNLRRGSRRAGNHR 288
Query: 621 VREIEFGSALLAALNTLGPGSFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSPERGSPG 680
VREIEFGSALLAALNTLGPGSFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSPERGSPG
Sbjct: 289 VREIEFGSALLAALNTLGPGSFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSPERGSPG 348
Query: 681 RPAFLRSPGLCGPGPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGW 740
RPAFLRSPGLCGPGPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGW
Sbjct: 349 RPAFLRSPGLCGPGPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGW 408
Query: 741 TFAAALRKGAPREQPPASPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGL 800
TFAAALRKGAPREQPPASPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGL
Sbjct: 409 TFAAALRKGAPREQPPASPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGL 468
Query: 801 CVLQPFPARSRGLGVPSQQGPTGSPGCRDRASAPRAGAEAGSMETFLRNGGLYPPPSPRA 860
CVLQPFPARSRGLGVPSQQGPTGSPGCRDRASAPRAGAEAGSMETFLRNGGLYPPPSPRA
Sbjct: 469 CVLQPFPARSRGLGVPSQQGPTGSPGCRDRASAPRAGAEAGSMETFLRNGGLYPPPSPRA 528
Query: 861 PAVCVQHLSF 870
PAVCVQHLSF
Sbjct: 529 PAVCVQHLSF 538
Score = 32.0 bits (71), Expect = 2.6
Identities = 50/177 (28%), Positives = 59/177 (33%), Gaps = 39/177 (22%)
Query: 632 AALNTLGPGSFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLC 691
A + P AG G GP S+ GL + P R R A L
Sbjct: 108 AQVRAARPAGMAAGTGRSGPGSA----------RLGLGSGWDPARAVAPRAARALGAALF 157
Query: 692 GPGPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALRKGAP 751
G LS P C G RAF AG + RRR+RG A +R P
Sbjct: 158 GRAVHTAALSGPH-CRLRCGA--------RAF-YAAAGGASSRRRQRGRNPALIVRGPGP 207
Query: 752 RE-------QPPASPAASP---CQAPRAPEKETE-----APR----LRGRATAVAPR 789
R P P ASP + PR P PR LRG+ + PR
Sbjct: 208 RRGGGLTSAPPGLPPLASPPPFWELPRPPPPPPPPGPALLPRRLRELRGKEVGLRPR 264
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 66.6 bits (161), Expect = 9e-11
Identities = 135/487 (27%), Positives = 163/487 (33%), Gaps = 112/487 (22%)
Query: 445 GETTPLGEA--RGPCWKARGAVPSGR--LRGRPGR--VAGASGRRGASQARGGTGRA-PA 497
G P GE RGP +A A P G LRG PG + GA GR G G G + PA
Sbjct: 370 GPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPPGSRGASGPA 429
Query: 498 RLRRGRGMPGRVGN-GVGEGRGASEPEGEPEPRARADLEVLQAGFERLQSLPELAERLGG 556
+R G GR G G+ RG G P + G + P G
Sbjct: 430 GVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEG----PVGLPGIDGRPGPIGPAGA 485
Query: 557 RC-PGQVA-------------HGVLARAGLLAAAARPGLAGS-GVQRALALAAAQLGGWT 601
R PG + +G AGL A PG G+ G Q Q G
Sbjct: 486 RGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGE 545
Query: 602 TCVVSPNLRRG-------SRRAGNHRVREIEFGSALLAALNTLG----PGSFGAG----- 645
P +G + G R + L G PG GA
Sbjct: 546 QGPPGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGESGAAGPTGP 605
Query: 646 LGAQGPRSSTPECPVVNGSEWGL------AAPLSP-----------------ERGSPGRP 682
+G++GP S P P N E G+ A P P E+G PG
Sbjct: 606 IGSRGP--SGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLR 663
Query: 683 AFLRSPGLCGPGPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTF 742
+ +PG G PG + P P G GD EA A A P AGP
Sbjct: 664 GEIGNPGRDGARGAPGAVGAPGPAG-ATGDRGEAGAAGPAGP---AGP------------ 707
Query: 743 AAALRKGAPREQPPASPA-----ASPCQAPRAP--EKETEAPRLRGRATAVAPRPLPAAP 795
+G+P E+ PA A P A P + E A +G V P A
Sbjct: 708 -----RGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAA 762
Query: 796 GFSGLCVLQPFPARSRGLGVPSQQGPTGSPGCRDRASAPRAGAEAGSMETFLRNGGLYPP 855
G +G P PA SRG G P G TG PG R P G+ P
Sbjct: 763 GPAGPNG-PPGPAGSRGDGGP--PGMTGFPGAAGRTGPPGP-------------SGISGP 806
Query: 856 PSPRAPA 862
P P PA
Sbjct: 807 PGPPGPA 813
Score = 62.8 bits (151), Expect = 1e-09
Identities = 121/429 (28%), Positives = 141/429 (32%), Gaps = 67/429 (15%)
Query: 445 GETTPLGEARGPCWKA--RGAVPSGRLRGRPGRVA--GASGRRGASQARGGTGRAPARLR 500
GE +G A GP A RG V L G G GA+G GA A G G A A
Sbjct: 265 GEIGAVGNA-GPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGL 323
Query: 501 RG-RGMPGRVGNGVGEGRGASEPEGEPEPRARADLEVLQAGFERLQSLPELAERLGGRCP 559
G RG+PG VG GA GEP P G + P A G P
Sbjct: 324 PGPRGIPGPVG--AAGATGARGLVGEPGPAG-------SKGESGNKGEPGSAGPQGPPGP 374
Query: 560 G--QVAHGVLARAGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAG 617
+ G AG PGL GS R L A + G V+ P RG+ +G
Sbjct: 375 SGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAG-----VMGPPGSRGA--SG 427
Query: 618 NHRVREIEFGSALLAALNTLGPGSFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSPERG 677
VR + +GP G GP E PV G P+ P G
Sbjct: 428 PAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGK--EGPVGLPGIDGRPGPIGPA-G 484
Query: 678 SPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRR 737
+ G P + PG GP PG GD A LA RGA G
Sbjct: 485 ARGEPGNIGFPGPKGPTGDPGK----------NGDKGHAGLAG----ARGAPGPDGNNGA 530
Query: 738 RGWTFAAALRKGAPREQPPASPAASPCQAPRAPEKETEAPRLR------GRATAVAPRPL 791
+G ++ G + PP P P P E P R G PR
Sbjct: 531 QGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGE 590
Query: 792 PAAPGFSGLCVLQPFPARSRG-------------------LGVPSQQGPTGSPGCRDRAS 832
PG SG P SRG +G GP+G PG R A
Sbjct: 591 RGPPGESG-AAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAG 649
Query: 833 APRAGAEAG 841
P E G
Sbjct: 650 IPGGKGEKG 658
Score = 58.5 bits (140), Expect = 3e-08
Identities = 126/471 (26%), Positives = 160/471 (33%), Gaps = 95/471 (20%)
Query: 462 GAVPSGRL--RGRPGRVAGASGRRGASQARGGTGR----APARLRRGRGMPGRVGNGVGE 515
G P G + RG PG AGA G +G G G PA R G PG+ G
Sbjct: 89 GPGPMGLMGPRGPPG-AAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHP 147
Query: 516 G-------RGASEPEGEPEPRARADLEVLQAGFERLQSLPELAERLGGRCPGQVAHGVLA 568
G RG P+G L GF+ ++ L + L G+ PG A GV
Sbjct: 148 GKPGRPGERGVVGPQGARGFPGTPGLP----GFKGIRGHNGL-DGLKGQ-PG--APGVKG 199
Query: 569 RAGLLAAAARPGLAGS-------GVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRV 621
G PG G+ G A A A+ + V P GS AG
Sbjct: 200 EPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGS--AGPPGF 257
Query: 622 REIEFGSALLAALNTLGPGSFGAGLGAQG-PRSSTPECPVVNGSEWGLAAPLSPERGSPG 680
+ A+ GP G G P S P P N GL +G+ G
Sbjct: 258 PGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGA----KGAAG 313
Query: 681 RPAFLRSPGLCGPGPVPGGLSV------------PTPCGRGAGDFSEADLADRAFPVRGA 728
P +PGL GP +PG + P P G G+ A P
Sbjct: 314 LPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAG-SKGESGNKGEPGSAGPQGPP 372
Query: 729 GPIAGRRRRRGWTFAAALR--------KGAPREQ-------------PPASPAASPCQAP 767
GP +G +RG A +G+P + PP S AS
Sbjct: 373 GP-SGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPPGSRGASGPAGV 431
Query: 768 RAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQ-------------PF-PARSRG- 812
R P + P G + PR LP +PG G + P PA +RG
Sbjct: 432 RGPNGDAGRP---GEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARGE 488
Query: 813 ---LGVPSQQGPTGSPGCR-DRASAPRAGAEAGSMETFLRNGGLYPPPSPR 859
+G P +GPTG PG D+ A AGA N G PP P+
Sbjct: 489 PGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPD--GNNGAQGPPGPQ 537
Score = 55.1 bits (131), Expect = 3e-07
Identities = 120/451 (26%), Positives = 149/451 (33%), Gaps = 56/451 (12%)
Query: 440 RGA--RAGETTPLGEA--RGPCWKARGAVPSGRLRGRPGR--VAGASGRRGASQARGGTG 493
RGA G P G RG A A P+G RG PG G +G G + G G
Sbjct: 675 RGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGP-RGSPGERGEVGPAGPNGFAGPAGAAG 733
Query: 494 RAPARLRRG----RGMPGRVG-NGVGEGRGASEPEGEPEPR-ARADLEVLQAGFERLQSL 547
+ A+ RG +G G VG G G + P G P P +R D G +
Sbjct: 734 QPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGD-----GGPPGMTGF 788
Query: 548 PELAERLGGRCPGQVAHGVLARAGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVVSP 607
P A R G P G+ G A + GL G + ++G V P
Sbjct: 789 PGAAGRTGPPGPS----GISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGA-----VGP 839
Query: 608 NLRRGSR----RAGNHRVREIEFGSALLAALNTLG-PGSFGAGLGAQGPRSSTPECPVVN 662
G + AG LL A LG PGS G G G + E
Sbjct: 840 PGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGER-GLPGVAGAVGE----- 893
Query: 663 GSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGAGDFSEADLADRA 722
G+A P G+ G P + SPG+ G G P G D +R
Sbjct: 894 PGPLGIAGP----PGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERG 949
Query: 723 FPVRGAGPI--AGRRRRRGWTFAAALRKGAPREQPPASPAA-SPCQAPRAPEKETEAPRL 779
+P GP+ AG G A + G E P+ P + PR P
Sbjct: 950 YP-GNIGPVGAAGAPGPHG-PVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQGIRGD 1007
Query: 780 RGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTG--------SPGCRD-R 830
+G PR LP G +GL L G P GP G P +D R
Sbjct: 1008 KGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDGR 1067
Query: 831 ASAPRAGAEAGSMETFLRNGGLYPPPSPRAP 861
P AG G PP P P
Sbjct: 1068 TGHPGTVGPAGIRGPQGHQGPAGPPGPPGPP 1098
Score = 52.8 bits (125), Expect = 1e-06
Identities = 126/461 (27%), Positives = 153/461 (33%), Gaps = 91/461 (19%)
Query: 462 GAVPSGRLRGRPGRVAGASGRRGASQARGGTG-RAPARLRRGRGMPGRVGN--------- 511
G + RG PG + G G +G + G G + A L RG PG GN
Sbjct: 478 GPIGPAGARGEPGNI-GFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQGPPGP 536
Query: 512 -GVGEGRGASEP------EGEPEPRARADLEVLQAGFERLQS---LPELAERLGGRCPG- 560
GV G+G P +G P P A EV + G L LP A G R P
Sbjct: 537 QGVQGGKGEQGPPGPPGFQGLPGPSGPAG-EVGKPGERGLHGEFGLPGPAGPRGERGPPG 595
Query: 561 -QVAHGVLARAGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNH 619
A G G + PG G+ + + A G P+ G R A
Sbjct: 596 ESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGP-----SGPSGLPGERGAAGI 650
Query: 620 RVREIEFGSALLAALNTLGPGSFGA-----GLGAQGPRSSTPECPVVNGSEWGLAAPLSP 674
+ E G L PG GA +GA GP +T + E G A P P
Sbjct: 651 PGGKGEKGEPGLRG-EIGNPGRDGARGAPGAVGAPGPAGATGD-----RGEAGAAGPAGP 704
Query: 675 E--RGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCG-RGA-GDFSEADLADRAFPVRGAGP 730
RGSPG + G G G P G RGA G E + PV AGP
Sbjct: 705 AGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGP 764
Query: 731 I--------AGRRRRRGWTF-----AAALRKGAPREQ----PPASPAASPCQAPRAPEKE 773
AG R G AA R G P PP P + + R P +
Sbjct: 765 AGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGD 824
Query: 774 TEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRG-------------LGVPSQQG 820
G AV P PGF+G + P+ G LG P G
Sbjct: 825 QGPVGRTGEVGAVGP------PGFAG----EKGPSGEAGTAGPPGTPGPQGLLGAPGILG 874
Query: 821 PTGSPGCRDRASAPRAGAEAGSMETFLRNGGLYPPPSPRAP 861
GS G R A E G + G+ PP R P
Sbjct: 875 LPGSRGERGLPGVAGAVGEPGPL-------GIAGPPGARGP 908
Score = 38.5 bits (88), Expect = 0.027
Identities = 55/199 (27%), Positives = 65/199 (32%), Gaps = 36/199 (18%)
Query: 675 ERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGP---- 730
ERG PG P G GP PG P G A + + P+ GP
Sbjct: 43 ERGPPGPPGRDGEDGPTGPPGPPGPPGPPGLGGNFAAQYDGKGVGLGPGPMGLMGPRGPP 102
Query: 731 -IAGRRRRRGWTFAAALRKGAPREQPPAS---PAASPCQA-----PRAPEKETEAPRLRG 781
AG +G+ A G P + PA PA P +A P P + E RG
Sbjct: 103 GAAGAPGPQGFQGPAG-EPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGE----RG 157
Query: 782 RATAVAPRPLPAAPGFSGLCVL-----------QPFPARSRGL-------GVPSQQGPTG 823
R P PG G + QP +G G P Q G G
Sbjct: 158 VVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARG 217
Query: 824 SPGCRDRASAPRAGAEAGS 842
PG R R AP GS
Sbjct: 218 LPGERGRVGAPGPAGARGS 236
Score = 32.3 bits (72), Expect = 2.0
Identities = 61/227 (26%), Positives = 75/227 (33%), Gaps = 15/227 (6%)
Query: 637 LGPGSFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPV 696
LGPG G +G +GP P G + G P E G PG+ + G GP
Sbjct: 88 LGPGPMGL-MGPRGP----PGAAGAPGPQ-GFQGPAG-EPGEPGQTGPAGARGPAGPPGK 140
Query: 697 PGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALR--KGAPREQ 754
G P GR R FP G + G + RG L+ GAP +
Sbjct: 141 AGEDGHPGKPGRPGERGVVGPQGARGFP--GTPGLPGFKGIRGHNGLDGLKGQPGAPGVK 198
Query: 755 PPASPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGL- 813
P A P RGR A P + G G V P S G
Sbjct: 199 --GEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGP-VGPAGPIGSAGPP 255
Query: 814 GVPSQQGPTGSPGCRDRASAPRAGAEAGSMETFLRNGGLYPPPSPRA 860
G P GP G G A G + +G + PP +P A
Sbjct: 256 GFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGA 302
Score = 30.0 bits (66), Expect = 9.7
Identities = 28/77 (36%), Positives = 33/77 (42%), Gaps = 21/77 (27%)
Query: 21 PGEKGEKRRTKQIIAAQAGGEGGRAQPGLPCSVDLATGLEGPLGGPAVDLDVGFSPGDDI 80
PG KGE A AG G R + GLP GL GP+G P +PG +
Sbjct: 261 PGPKGEIGAVGN--AGPAGPAGPRGEVGLP-------GLSGPVGPPG-------NPGANG 304
Query: 81 AGQSLGAAGGQVVHLPG 97
+ GAAG LPG
Sbjct: 305 LTGAKGAAG-----LPG 316
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 63.9 bits (154), Expect = 6e-10
Identities = 122/445 (27%), Positives = 154/445 (34%), Gaps = 54/445 (12%)
Query: 432 GIEAAVLLRGARAGETTPLGEARGPCWKARGAVPSGRLRGRPGRVAGASGRRGASQARGG 491
G A L+G R TP + GP + A P G +G PG + G G RGA+ G
Sbjct: 708 GSPGAQGLQGPRGLPGTPGTD--GPKGASGPAGPPGA-QGPPG-LQGMPGERGAAGIAGP 763
Query: 492 TG-RAPARLRRGRGMPGRVGNGVGEGRGASEPEGEPEPRARADLEVLQAGFERLQSLPEL 550
G R + G PG+ G GRG + P G P P A A+ E + G P
Sbjct: 764 KGDRGDVGEKGPEGAPGKDG-----GRGLTGPIGPPGP-AGANGEKGEVG------PPGP 811
Query: 551 AERLGGR-CPGQVAHGVLARAGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNL 609
A G R PG+ G G A PG G + A Q G +P
Sbjct: 812 AGSAGARGAPGE--RGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGD----AGAPGP 865
Query: 610 RRGSRRAGNHRVREIEFGSALLAALNTLGPGSFGAGLGAQGPRSST-----PECPVVNGS 664
+ S G + A G F G GP S P P +G
Sbjct: 866 QGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGK 925
Query: 665 EWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGA--GDFSEADLADRA 722
+ A RG G P PGL GP PG P G G LA +
Sbjct: 926 DGPKGA-----RGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQ- 979
Query: 723 FPVRGAGPIAGRRRRRGWTFAAALRKGAPREQPPASPAASPCQAPRAPEKETEAPRLRGR 782
RG + G+R RG+ G P +Q +P AS + P P P L G
Sbjct: 980 ---RGIVGLPGQRGERGFPGLPG-PSGEPGKQ--GAPGASGDRGPPGP---VGPPGLTGP 1030
Query: 783 ATAVAPRPLPAA---PGFSGLCVLQPFPARSRGLGVPSQQGPTGSPGCRDRASAPRAGAE 839
A P A PG G ++ + +G P GP GSPG E
Sbjct: 1031 AGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGE 1090
Query: 840 AGSMETFLRNG-----GLYPPPSPR 859
AG+ +G G+ P PR
Sbjct: 1091 AGAQGPMGPSGPAGARGIQGPQGPR 1115
Score = 56.2 bits (134), Expect = 1e-07
Identities = 104/400 (26%), Positives = 119/400 (29%), Gaps = 59/400 (14%)
Query: 445 GETTPLGEARGPCWKARGAVPSGRLRGRPGRVAGASGRRGASQARGGTGRAPARLRRGRG 504
GE+ GE P +P R R P AGA G G G G P G G
Sbjct: 309 GESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPG--PVGPAGGPG 366
Query: 505 MPGRVG-NGVGEGRGASEPEGEPEPRARADLEVLQAGFERLQSLPELAERLGGRCPGQVA 563
PG G G GA PEG PR G P A G PG
Sbjct: 367 FPGAPGAKGEAGPTGARGPEGAQGPR----------GEPGTPGSPGPAGASGN--PGTDG 414
Query: 564 -HGVLARAGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVR 622
G AG A PG G A LG P + G +
Sbjct: 415 IPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLG--------PKGQTGEPGIAGFKGE 466
Query: 623 EIEFGSALLAALNTLGPGSFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSP--ERGSPG 680
+ G GP G +G R + E G P+ P ERG+PG
Sbjct: 467 QGPKGEP-----GPAGPQGAPGPAGEEGKRGAR--------GEPGGVGPIGPPGERGAPG 513
Query: 681 RPAFLRSPGLCGPGPVPG-----GLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRR 735
F GL GP PG GL+ P G E L GA + GR
Sbjct: 514 NRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLP-------GARGLTGRP 566
Query: 736 RRRGWTFAAALRKGAPREQPPASPAASPCQAPRAPEKETEAPR-LRGRATAVAPRPLPAA 794
G GAP E P + P+ G + LP A
Sbjct: 567 GDAG-PQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGA 625
Query: 795 PGFSGLCVLQPFPARSRGLGVPSQQGPTGSPGCRDRASAP 834
PG GL P + G GP G G R AP
Sbjct: 626 PGLRGL------PGKDGETGAAGPPGPAGPAGERGEQGAP 659
Score = 54.3 bits (129), Expect = 5e-07
Identities = 107/393 (27%), Positives = 133/393 (33%), Gaps = 65/393 (16%)
Query: 444 AGETTPLGEARGPCWKARGAVPSGR-LRGRPGRVAGASGRRGASQARGGTGR-APARLRR 501
+G P G P +P R L GRPG AG G+ G S A G GR P +
Sbjct: 536 SGLAGPKGANGDPGRPGEPGLPGARGLTGRPGD-AGPQGKVGPSGAPGEDGRPGPPGPQG 594
Query: 502 GRGMPGRVGNGVGEGRGASEPEGEPEPRARADLEVLQAGFERLQSLPELAERLGGRCPGQ 561
RG PG +G G GEP +AG + L P L
Sbjct: 595 ARGQPGVMGFP-----GPKGANGEPG----------KAGEKGLPGAPGL----------- 628
Query: 562 VAHGVLARAGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRV 621
G+ + G AA PG AG +R A G+ P + G+ V
Sbjct: 629 --RGLPGKDGETGAAGPPGPAGPAGERG-EQGAPGPSGFQGLPGPPGPPGEGGKPGDQGV 685
Query: 622 REIEFGSALLAALNTLG-PGSFGA--GLGAQGPRSSTPECPVVNGSEWGLAAPLSPERGS 678
L+ G PG G+ G QGPR P P +G + G + P P G+
Sbjct: 686 PGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRG-LPGTPGTDGPK-GASGPAGPP-GA 742
Query: 679 PGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRR 738
G P PG G + G P G GD E +G G+ R
Sbjct: 743 QGPPGLQGMPGERGAAGIAG------PKG-DRGDVGE----------KGPEGAPGKDGGR 785
Query: 739 GWTF-----AAALRKGAPREQPPASPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPA 793
G T A G E P PA S E+ P G A P P
Sbjct: 786 GLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPP--GPAGFAGP---PG 840
Query: 794 APGFSGLCVLQPFPARSRGLGVPSQQGPTGSPG 826
A G G Q + G P QGP+G+PG
Sbjct: 841 ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPG 873
Score = 53.1 bits (126), Expect = 1e-06
Identities = 119/427 (27%), Positives = 141/427 (33%), Gaps = 73/427 (17%)
Query: 445 GETTPLGEARGPCWKARGAVPSGR-----LRGRPGRVA--GASGRRGASQARGGTG---- 493
GE P GE GP P+G RG PG V G G RGA RG G
Sbjct: 465 GEQGPKGEP-GPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGL 523
Query: 494 ---------RAPARL---RRGRGMPGRVGN-GVGEGRGASEPEGEPEPRARADLEVLQAG 540
R P+ L + G PGR G G+ RG + G+ P+ + V +G
Sbjct: 524 AGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGK----VGPSG 579
Query: 541 FERLQSLPELAERLGGRCPGQVAHGVLARAGLLAAAARPGLAGS-GVQRALALAAAQLGG 599
P G R GQ GV+ G A PG AG G+ A L
Sbjct: 580 APGEDGRPGPPGPQGAR--GQP--GVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKD 635
Query: 600 WTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPGSFGAGLGAQGPRSSTPECP 659
T P G AG + S GP G G QG P
Sbjct: 636 GETGAAGPPGPAGP--AGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQG-------VP 686
Query: 660 VVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGAGDFSEADLA 719
G+ GL P ERG PG + GL GP +PG P G
Sbjct: 687 GEAGAP-GLVGPRG-ERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGP-------- 736
Query: 720 DRAFPVRGAGPIAGRRRRRGWTFAAALRKGAPREQPPASPAASPCQAPRAPEKETE-APR 778
A P GP +G P E+ A A EK E AP
Sbjct: 737 --AGPPGAQGPPG--------------LQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG 780
Query: 779 LRGRATAVAPRPLPAAPGFSGLC--VLQPFPARSRGL-GVPSQQGPTGSPGCRDRASAPR 835
G P P G +G V P PA S G G P ++G TG PG A P
Sbjct: 781 KDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPG 840
Query: 836 AGAEAGS 842
A + G+
Sbjct: 841 ADGQPGA 847
Score = 52.0 bits (123), Expect = 2e-06
Identities = 113/432 (26%), Positives = 144/432 (33%), Gaps = 61/432 (14%)
Query: 465 PSGRLRGRPGRVAGASGRRGASQARGGTGRAPARLRRG----RGMPGRVGNGVGEGR-GA 519
P G+ +G PG + G +G +G G R RG +G PG G G G
Sbjct: 102 PKGQ-KGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGN 160
Query: 520 SEPEGEPEPRARADLEVLQAGFERLQSLPELAERLGGRCPGQVAHGVLARAGLLAAAARP 579
P G P P L G Q E+ GG G V G + G + P
Sbjct: 161 PGPPGPPGPPGPPGL----GGNFAAQMAGGFDEKAGGAQLG-VMQGPM---GPMGPRGPP 212
Query: 580 GLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGP 639
G AG+ + + G V P RG + E G P
Sbjct: 213 GPAGAPGPQGFQGNPGEPG--EPGVSGPMGPRGPPGPPGKPGDDGEAGK----------P 260
Query: 640 GSFG--AGLGAQGPRS--STPECPVV---------NGSEWGLAAP-LSPERGSPGRPAFL 685
G G G QG R TP P V +G++ AP + E GSPG
Sbjct: 261 GKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENG-- 318
Query: 686 RSPGLCGPGPVPG--GLSVPTPCGRGAGDFSEADLADRAFPVRGAG----PIAGRRRRRG 739
SPG GP +PG G + P G+ + A PV AG P A +
Sbjct: 319 -SPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEA 377
Query: 740 WTFAAALRKGA--PREQPPASPAASPCQAPRAPEKE--------TEAPRLRGRATAVAPR 789
A +GA PR +P + P A P + AP + G PR
Sbjct: 378 GPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPR 437
Query: 790 PLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPGCRDRASAPRAGAEAGSMETFLRN 849
P G +G + G +QGP G PG AP E G
Sbjct: 438 GPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEP 497
Query: 850 GGLYP--PPSPR 859
GG+ P PP R
Sbjct: 498 GGVGPIGPPGER 509
Score = 44.3 bits (103), Expect = 5e-04
Identities = 105/399 (26%), Positives = 124/399 (31%), Gaps = 126/399 (31%)
Query: 470 RGRPGRVAGASGRRGASQARGGTGRAPARLRRGR-GMPGRVGNGVGEGRGASEPEGEPEP 528
+G PG G +G +G RG G A RGR G PG GN G P G P P
Sbjct: 119 KGPPGP-QGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNP-----GPPGPPGPPGP 172
Query: 529 RARADLEVLQAGFERLQSLPELAERLGGRCPGQVAHGVLARAGLLAAAARPGLAGSGVQR 588
LGG Q+A G +AG
Sbjct: 173 PG-----------------------LGGNFAAQMAGGFDEKAG----------------- 192
Query: 589 ALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPGSFGAGLGA 648
AQLG + + +GP GA
Sbjct: 193 -----GAQLG------------------------------VMQGPMGPMGPRGPPGPAGA 217
Query: 649 QGPRS--STPECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPC 706
GP+ P P E G++ P+ P RG PG P PG G PG P
Sbjct: 218 PGPQGFQGNPGEP----GEPGVSGPMGP-RGPPGPPG---KPGDDGEAGKPGKAGERGPP 269
Query: 707 G-RGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTF--AAALRKGAPREQPPA-SPAAS 762
G +GA R FP G + G + RG+ A GAP + + SP +
Sbjct: 270 GPQGA----------RGFP--GTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGEN 317
Query: 763 PCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPT 822
P P P RGR P A G G QP PA G P GP
Sbjct: 318 GSPGPMGPRG---LPGERGRT---GPAGAAGARGNDG----QPGPA-----GPPGPVGPA 362
Query: 823 GSPGCRDRASAPRAGAEAGSMETFLRNGGLYPPPSPRAP 861
G PG AP A EAG G P P P
Sbjct: 363 GGPGF---PGAPGAKGEAGPTGARGPEGAQGPRGEPGTP 398
Score = 43.1 bits (100), Expect = 0.001
Identities = 57/190 (30%), Positives = 68/190 (35%), Gaps = 17/190 (8%)
Query: 645 GLGAQGPRSSTPECPVVNGSEWGLAAP-LSPERGSPGRPAFLRSPGLCGPGPVPGGLSVP 703
GL Q P P +G AP S +RG PG + PGL GP PG P
Sbjct: 984 GLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGP---VGPPGLTGPAGEPGREGSP 1040
Query: 704 TPCGRGAGDFSEADLADR----AFPVRGAGPIAGRRRRRGWTFAAALRKGAPREQP--PA 757
G D + DR A GA G G T R A + P P+
Sbjct: 1041 GADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPS 1100
Query: 758 SPA-ASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGVP 816
PA A Q P+ P + +G A R L GF+GL L P S G
Sbjct: 1101 GPAGARGIQGPQGPRGD------KGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGAS 1154
Query: 817 SQQGPTGSPG 826
GP+G G
Sbjct: 1155 GPAGPSGPRG 1164
Score = 42.0 bits (97), Expect = 0.002
Identities = 93/366 (25%), Positives = 123/366 (33%), Gaps = 43/366 (11%)
Query: 440 RGARAGETTPLGEARGPCWKARGAVPSGRLRGRPGR-----VAGASGRRGASQARGGTGR 494
+GAR G++ P G A P + P + G PG G G +G + RG G
Sbjct: 929 KGAR-GDSGPPGRAGEPGLQGPAGPPGEK--GEPGDDGPSGAEGPPGPQGLAGQRGIVGL 985
Query: 495 APARLRRG-RGMPGRVGNGVGEGR-GASEPEGEPEPRARADLEVLQAGFERLQSLPELAE 552
R RG G+PG G +G GAS G P P L AG + P A+
Sbjct: 986 PGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTG-PAGEPGREGSPG-AD 1043
Query: 553 RLGGRCPGQVAHGVLARAGLLAAAARPGLAGS-------GVQRALALAAAQ--LG----G 599
GR G G + A PG GS G Q A AQ +G
Sbjct: 1044 GPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPA 1103
Query: 600 WTTCVVSPNLRRGSR-RAGNHRVREIEFGSALLAALNTLGPGSFGAGLGAQGPRSST--- 655
+ P RG + AG R ++ GP GA GP +
Sbjct: 1104 GARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPR 1163
Query: 656 ----PECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGAG 711
P P G+ P+ P PG G GP PG P P G G
Sbjct: 1164 GPPGPVGPSGKDGANGIPGPIGP----PGPRGRSGETGPAGPPGNPGPPGPPGPPGPGID 1219
Query: 712 DFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALRKGAPREQPPASPAASPCQAPRAPE 771
+ A L R +G P+ R + A LR+ + ++ R+PE
Sbjct: 1220 MSAFAGLGPRE---KGPDPLQYMRADQA---AGGLRQHDAEVDATLKSLNNQIESIRSPE 1273
Query: 772 KETEAP 777
+ P
Sbjct: 1274 GSRKNP 1279
Score = 41.2 bits (95), Expect = 0.004
Identities = 98/355 (27%), Positives = 120/355 (33%), Gaps = 55/355 (15%)
Query: 440 RGARAGETTPLGEARGPCWKARGAVPSGRLRGRPGRVAGASGRRGASQARGGTGRAPAR- 498
+GAR + P G P R P P G SG+ G ARG +G P R
Sbjct: 884 KGARGAQGPP-GATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSG-PPGRA 941
Query: 499 ----LRRGRGMPGRVGNGVGEGRGASEPEGEPEPRARADLEVL-----QAGFERLQSLPE 549
L+ G PG G +G S EG P P+ A + Q G LP
Sbjct: 942 GEPGLQGPAGPPGEKGEPGDDG--PSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPG 999
Query: 550 LAERLGGR-CPGQVAH----GVLARAGLLAAAARPGLAGS-------GVQRALALAAAQL 597
+ G + PG G + GL A PG GS G A + +
Sbjct: 1000 PSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDR- 1058
Query: 598 GGWTTCVVSPNLRR--GSRRAGNHRVREIEFGSALLAALNTLGP-GSFGA-GL-GAQGPR 652
G T V +P GS ++ + G A A +GP G GA G+ G QGPR
Sbjct: 1059 -GETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEA--GAQGPMGPSGPAGARGIQGPQGPR 1115
Query: 653 SSTPECPVVNGSEWGLAAP--LSPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGA 710
E E GL + +G PG P G GP G P P G
Sbjct: 1116 GDKGEAG--EPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSG 1173
Query: 711 GDFSEADLADRAFPVRGAGPIA--GRRRRRGWTFAAALRKGAPREQPPASPAASP 763
D + GPI G R R G T A G P P P P
Sbjct: 1174 KDGANGI----------PGPIGPPGPRGRSGETGPA----GPPGNPGPPGPPGPP 1214
Score = 34.7 bits (78), Expect = 0.39
Identities = 50/165 (30%), Positives = 60/165 (36%), Gaps = 38/165 (23%)
Query: 17 PRFIPGEKGEKRRTKQIIAAQAGGEGGRAQPGLPCSVDLATGLEGPLGGPAVDLDVGF-- 74
PR +PGE+G RT AA A G G+ P P G GP GGP GF
Sbjct: 325 PRGLPGERG---RTGPAGAAGARGNDGQPGPAGP------PGPVGPAGGP------GFPG 369
Query: 75 SPGDDIAGQSLGAAGGQVVHLPGGQLAVPDVEVGQLTHKCLGGIKPTTQSYLLLAQHQHA 134
+PG GA G + P G+ P G P S
Sbjct: 370 APGAKGEAGPTGARGPEGAQGPRGEPGTP------------GSPGPAGAS--------GN 409
Query: 135 LGLDGVIGRQVLATATLRAILVGLPDP-VPGGPVYTTSPSLHQGE 178
G DG+ G + A A A G P P P GP T P +G+
Sbjct: 410 PGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQ 454
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 63.9 bits (154), Expect = 6e-10
Identities = 122/445 (27%), Positives = 154/445 (34%), Gaps = 54/445 (12%)
Query: 432 GIEAAVLLRGARAGETTPLGEARGPCWKARGAVPSGRLRGRPGRVAGASGRRGASQARGG 491
G A L+G R TP + GP + A P G +G PG + G G RGA+ G
Sbjct: 639 GSPGAQGLQGPRGLPGTPGTD--GPKGASGPAGPPGA-QGPPG-LQGMPGERGAAGIAGP 694
Query: 492 TG-RAPARLRRGRGMPGRVGNGVGEGRGASEPEGEPEPRARADLEVLQAGFERLQSLPEL 550
G R + G PG+ G GRG + P G P P A A+ E + G P
Sbjct: 695 KGDRGDVGEKGPEGAPGKDG-----GRGLTGPIGPPGP-AGANGEKGEVG------PPGP 742
Query: 551 AERLGGR-CPGQVAHGVLARAGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNL 609
A G R PG+ G G A PG G + A Q G +P
Sbjct: 743 AGSAGARGAPGE--RGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGD----AGAPGP 796
Query: 610 RRGSRRAGNHRVREIEFGSALLAALNTLGPGSFGAGLGAQGPRSST-----PECPVVNGS 664
+ S G + A G F G GP S P P +G
Sbjct: 797 QGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGK 856
Query: 665 EWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGA--GDFSEADLADRA 722
+ A RG G P PGL GP PG P G G LA +
Sbjct: 857 DGPKGA-----RGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQ- 910
Query: 723 FPVRGAGPIAGRRRRRGWTFAAALRKGAPREQPPASPAASPCQAPRAPEKETEAPRLRGR 782
RG + G+R RG+ G P +Q +P AS + P P P L G
Sbjct: 911 ---RGIVGLPGQRGERGFPGLPG-PSGEPGKQ--GAPGASGDRGPPGP---VGPPGLTGP 961
Query: 783 ATAVAPRPLPAA---PGFSGLCVLQPFPARSRGLGVPSQQGPTGSPGCRDRASAPRAGAE 839
A P A PG G ++ + +G P GP GSPG E
Sbjct: 962 AGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGE 1021
Query: 840 AGSMETFLRNG-----GLYPPPSPR 859
AG+ +G G+ P PR
Sbjct: 1022 AGAQGPMGPSGPAGARGIQGPQGPR 1046
Score = 56.2 bits (134), Expect = 1e-07
Identities = 104/400 (26%), Positives = 119/400 (29%), Gaps = 59/400 (14%)
Query: 445 GETTPLGEARGPCWKARGAVPSGRLRGRPGRVAGASGRRGASQARGGTGRAPARLRRGRG 504
GE+ GE P +P R R P AGA G G G G P G G
Sbjct: 240 GESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPG--PVGPAGGPG 297
Query: 505 MPGRVG-NGVGEGRGASEPEGEPEPRARADLEVLQAGFERLQSLPELAERLGGRCPGQVA 563
PG G G GA PEG PR G P A G PG
Sbjct: 298 FPGAPGAKGEAGPTGARGPEGAQGPR----------GEPGTPGSPGPAGASGN--PGTDG 345
Query: 564 -HGVLARAGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVR 622
G AG A PG G A LG P + G +
Sbjct: 346 IPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLG--------PKGQTGEPGIAGFKGE 397
Query: 623 EIEFGSALLAALNTLGPGSFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSP--ERGSPG 680
+ G GP G +G R + E G P+ P ERG+PG
Sbjct: 398 QGPKGEP-----GPAGPQGAPGPAGEEGKRGAR--------GEPGGVGPIGPPGERGAPG 444
Query: 681 RPAFLRSPGLCGPGPVPG-----GLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRR 735
F GL GP PG GL+ P G E L GA + GR
Sbjct: 445 NRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLP-------GARGLTGRP 497
Query: 736 RRRGWTFAAALRKGAPREQPPASPAASPCQAPRAPEKETEAPR-LRGRATAVAPRPLPAA 794
G GAP E P + P+ G + LP A
Sbjct: 498 GDAG-PQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGA 556
Query: 795 PGFSGLCVLQPFPARSRGLGVPSQQGPTGSPGCRDRASAP 834
PG GL P + G GP G G R AP
Sbjct: 557 PGLRGL------PGKDGETGAAGPPGPAGPAGERGEQGAP 590
Score = 54.3 bits (129), Expect = 5e-07
Identities = 107/393 (27%), Positives = 133/393 (33%), Gaps = 65/393 (16%)
Query: 444 AGETTPLGEARGPCWKARGAVPSGR-LRGRPGRVAGASGRRGASQARGGTGR-APARLRR 501
+G P G P +P R L GRPG AG G+ G S A G GR P +
Sbjct: 467 SGLAGPKGANGDPGRPGEPGLPGARGLTGRPGD-AGPQGKVGPSGAPGEDGRPGPPGPQG 525
Query: 502 GRGMPGRVGNGVGEGRGASEPEGEPEPRARADLEVLQAGFERLQSLPELAERLGGRCPGQ 561
RG PG +G G GEP +AG + L P L
Sbjct: 526 ARGQPGVMGFP-----GPKGANGEPG----------KAGEKGLPGAPGL----------- 559
Query: 562 VAHGVLARAGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRV 621
G+ + G AA PG AG +R A G+ P + G+ V
Sbjct: 560 --RGLPGKDGETGAAGPPGPAGPAGERG-EQGAPGPSGFQGLPGPPGPPGEGGKPGDQGV 616
Query: 622 REIEFGSALLAALNTLG-PGSFGA--GLGAQGPRSSTPECPVVNGSEWGLAAPLSPERGS 678
L+ G PG G+ G QGPR P P +G + G + P P G+
Sbjct: 617 PGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRG-LPGTPGTDGPK-GASGPAGPP-GA 673
Query: 679 PGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRR 738
G P PG G + G P G GD E +G G+ R
Sbjct: 674 QGPPGLQGMPGERGAAGIAG------PKG-DRGDVGE----------KGPEGAPGKDGGR 716
Query: 739 GWTF-----AAALRKGAPREQPPASPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPA 793
G T A G E P PA S E+ P G A P P
Sbjct: 717 GLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPP--GPAGFAGP---PG 771
Query: 794 APGFSGLCVLQPFPARSRGLGVPSQQGPTGSPG 826
A G G Q + G P QGP+G+PG
Sbjct: 772 ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPG 804
Score = 53.1 bits (126), Expect = 1e-06
Identities = 119/427 (27%), Positives = 141/427 (33%), Gaps = 73/427 (17%)
Query: 445 GETTPLGEARGPCWKARGAVPSGR-----LRGRPGRVA--GASGRRGASQARGGTG---- 493
GE P GE GP P+G RG PG V G G RGA RG G
Sbjct: 396 GEQGPKGEP-GPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGL 454
Query: 494 ---------RAPARL---RRGRGMPGRVGN-GVGEGRGASEPEGEPEPRARADLEVLQAG 540
R P+ L + G PGR G G+ RG + G+ P+ + V +G
Sbjct: 455 AGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGK----VGPSG 510
Query: 541 FERLQSLPELAERLGGRCPGQVAHGVLARAGLLAAAARPGLAGS-GVQRALALAAAQLGG 599
P G R GQ GV+ G A PG AG G+ A L
Sbjct: 511 APGEDGRPGPPGPQGAR--GQP--GVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKD 566
Query: 600 WTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPGSFGAGLGAQGPRSSTPECP 659
T P G AG + S GP G G QG P
Sbjct: 567 GETGAAGPPGPAGP--AGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQG-------VP 617
Query: 660 VVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGAGDFSEADLA 719
G+ GL P ERG PG + GL GP +PG P G
Sbjct: 618 GEAGAP-GLVGPRG-ERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGP-------- 667
Query: 720 DRAFPVRGAGPIAGRRRRRGWTFAAALRKGAPREQPPASPAASPCQAPRAPEKETE-APR 778
A P GP +G P E+ A A EK E AP
Sbjct: 668 --AGPPGAQGPPG--------------LQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG 711
Query: 779 LRGRATAVAPRPLPAAPGFSGLC--VLQPFPARSRGL-GVPSQQGPTGSPGCRDRASAPR 835
G P P G +G V P PA S G G P ++G TG PG A P
Sbjct: 712 KDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPG 771
Query: 836 AGAEAGS 842
A + G+
Sbjct: 772 ADGQPGA 778
Score = 52.0 bits (123), Expect = 2e-06
Identities = 113/432 (26%), Positives = 144/432 (33%), Gaps = 61/432 (14%)
Query: 465 PSGRLRGRPGRVAGASGRRGASQARGGTGRAPARLRRG----RGMPGRVGNGVGEGR-GA 519
P G+ +G PG + G +G +G G R RG +G PG G G G
Sbjct: 33 PKGQ-KGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGN 91
Query: 520 SEPEGEPEPRARADLEVLQAGFERLQSLPELAERLGGRCPGQVAHGVLARAGLLAAAARP 579
P G P P L G Q E+ GG G V G + G + P
Sbjct: 92 PGPPGPPGPPGPPGL----GGNFAAQMAGGFDEKAGGAQLG-VMQGPM---GPMGPRGPP 143
Query: 580 GLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGP 639
G AG+ + + G V P RG + E G P
Sbjct: 144 GPAGAPGPQGFQGNPGEPG--EPGVSGPMGPRGPPGPPGKPGDDGEAGK----------P 191
Query: 640 GSFG--AGLGAQGPRS--STPECPVV---------NGSEWGLAAP-LSPERGSPGRPAFL 685
G G G QG R TP P V +G++ AP + E GSPG
Sbjct: 192 GKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENG-- 249
Query: 686 RSPGLCGPGPVPG--GLSVPTPCGRGAGDFSEADLADRAFPVRGAG----PIAGRRRRRG 739
SPG GP +PG G + P G+ + A PV AG P A +
Sbjct: 250 -SPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEA 308
Query: 740 WTFAAALRKGA--PREQPPASPAASPCQAPRAPEKE--------TEAPRLRGRATAVAPR 789
A +GA PR +P + P A P + AP + G PR
Sbjct: 309 GPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPR 368
Query: 790 PLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPGCRDRASAPRAGAEAGSMETFLRN 849
P G +G + G +QGP G PG AP E G
Sbjct: 369 GPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEP 428
Query: 850 GGLYP--PPSPR 859
GG+ P PP R
Sbjct: 429 GGVGPIGPPGER 440
Score = 44.3 bits (103), Expect = 5e-04
Identities = 105/399 (26%), Positives = 124/399 (31%), Gaps = 126/399 (31%)
Query: 470 RGRPGRVAGASGRRGASQARGGTGRAPARLRRGR-GMPGRVGNGVGEGRGASEPEGEPEP 528
+G PG G +G +G RG G A RGR G PG GN G P G P P
Sbjct: 50 KGPPGP-QGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNP-----GPPGPPGPPGP 103
Query: 529 RARADLEVLQAGFERLQSLPELAERLGGRCPGQVAHGVLARAGLLAAAARPGLAGSGVQR 588
LGG Q+A G +AG
Sbjct: 104 PG-----------------------LGGNFAAQMAGGFDEKAG----------------- 123
Query: 589 ALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPGSFGAGLGA 648
AQLG + + +GP GA
Sbjct: 124 -----GAQLG------------------------------VMQGPMGPMGPRGPPGPAGA 148
Query: 649 QGPRS--STPECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPC 706
GP+ P P E G++ P+ P RG PG P PG G PG P
Sbjct: 149 PGPQGFQGNPGEP----GEPGVSGPMGP-RGPPGPPG---KPGDDGEAGKPGKAGERGPP 200
Query: 707 G-RGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTF--AAALRKGAPREQPPA-SPAAS 762
G +GA R FP G + G + RG+ A GAP + + SP +
Sbjct: 201 GPQGA----------RGFP--GTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGEN 248
Query: 763 PCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPT 822
P P P RGR P A G G QP PA G P GP
Sbjct: 249 GSPGPMGPRG---LPGERGRT---GPAGAAGARGNDG----QPGPA-----GPPGPVGPA 293
Query: 823 GSPGCRDRASAPRAGAEAGSMETFLRNGGLYPPPSPRAP 861
G PG AP A EAG G P P P
Sbjct: 294 GGPGF---PGAPGAKGEAGPTGARGPEGAQGPRGEPGTP 329
Score = 43.1 bits (100), Expect = 0.001
Identities = 57/190 (30%), Positives = 68/190 (35%), Gaps = 17/190 (8%)
Query: 645 GLGAQGPRSSTPECPVVNGSEWGLAAP-LSPERGSPGRPAFLRSPGLCGPGPVPGGLSVP 703
GL Q P P +G AP S +RG PG + PGL GP PG P
Sbjct: 915 GLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGP---VGPPGLTGPAGEPGREGSP 971
Query: 704 TPCGRGAGDFSEADLADR----AFPVRGAGPIAGRRRRRGWTFAAALRKGAPREQP--PA 757
G D + DR A GA G G T R A + P P+
Sbjct: 972 GADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPS 1031
Query: 758 SPA-ASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGVP 816
PA A Q P+ P + +G A R L GF+GL L P S G
Sbjct: 1032 GPAGARGIQGPQGPRGD------KGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGAS 1085
Query: 817 SQQGPTGSPG 826
GP+G G
Sbjct: 1086 GPAGPSGPRG 1095
Score = 42.0 bits (97), Expect = 0.002
Identities = 93/366 (25%), Positives = 123/366 (33%), Gaps = 43/366 (11%)
Query: 440 RGARAGETTPLGEARGPCWKARGAVPSGRLRGRPGR-----VAGASGRRGASQARGGTGR 494
+GAR G++ P G A P + P + G PG G G +G + RG G
Sbjct: 860 KGAR-GDSGPPGRAGEPGLQGPAGPPGEK--GEPGDDGPSGAEGPPGPQGLAGQRGIVGL 916
Query: 495 APARLRRG-RGMPGRVGNGVGEGR-GASEPEGEPEPRARADLEVLQAGFERLQSLPELAE 552
R RG G+PG G +G GAS G P P L AG + P A+
Sbjct: 917 PGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTG-PAGEPGREGSPG-AD 974
Query: 553 RLGGRCPGQVAHGVLARAGLLAAAARPGLAGS-------GVQRALALAAAQ--LG----G 599
GR G G + A PG GS G Q A AQ +G
Sbjct: 975 GPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPA 1034
Query: 600 WTTCVVSPNLRRGSR-RAGNHRVREIEFGSALLAALNTLGPGSFGAGLGAQGPRSST--- 655
+ P RG + AG R ++ GP GA GP +
Sbjct: 1035 GARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPR 1094
Query: 656 ----PECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGAG 711
P P G+ P+ P PG G GP PG P P G G
Sbjct: 1095 GPPGPVGPSGKDGANGIPGPIGP----PGPRGRSGETGPAGPPGNPGPPGPPGPPGPGID 1150
Query: 712 DFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALRKGAPREQPPASPAASPCQAPRAPE 771
+ A L R +G P+ R + A LR+ + ++ R+PE
Sbjct: 1151 MSAFAGLGPRE---KGPDPLQYMRADQA---AGGLRQHDAEVDATLKSLNNQIESIRSPE 1204
Query: 772 KETEAP 777
+ P
Sbjct: 1205 GSRKNP 1210
Score = 41.2 bits (95), Expect = 0.004
Identities = 98/355 (27%), Positives = 120/355 (33%), Gaps = 55/355 (15%)
Query: 440 RGARAGETTPLGEARGPCWKARGAVPSGRLRGRPGRVAGASGRRGASQARGGTGRAPAR- 498
+GAR + P G P R P P G SG+ G ARG +G P R
Sbjct: 815 KGARGAQGPP-GATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSG-PPGRA 872
Query: 499 ----LRRGRGMPGRVGNGVGEGRGASEPEGEPEPRARADLEVL-----QAGFERLQSLPE 549
L+ G PG G +G S EG P P+ A + Q G LP
Sbjct: 873 GEPGLQGPAGPPGEKGEPGDDG--PSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPG 930
Query: 550 LAERLGGR-CPGQVAH----GVLARAGLLAAAARPGLAGS-------GVQRALALAAAQL 597
+ G + PG G + GL A PG GS G A + +
Sbjct: 931 PSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDR- 989
Query: 598 GGWTTCVVSPNLRR--GSRRAGNHRVREIEFGSALLAALNTLGP-GSFGA-GL-GAQGPR 652
G T V +P GS ++ + G A A +GP G GA G+ G QGPR
Sbjct: 990 -GETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEA--GAQGPMGPSGPAGARGIQGPQGPR 1046
Query: 653 SSTPECPVVNGSEWGLAAP--LSPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGA 710
E E GL + +G PG P G GP G P P G
Sbjct: 1047 GDKGEAG--EPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSG 1104
Query: 711 GDFSEADLADRAFPVRGAGPIA--GRRRRRGWTFAAALRKGAPREQPPASPAASP 763
D + GPI G R R G T A G P P P P
Sbjct: 1105 KDGANGI----------PGPIGPPGPRGRSGETGPA----GPPGNPGPPGPPGPP 1145
Score = 34.7 bits (78), Expect = 0.39
Identities = 50/165 (30%), Positives = 60/165 (36%), Gaps = 38/165 (23%)
Query: 17 PRFIPGEKGEKRRTKQIIAAQAGGEGGRAQPGLPCSVDLATGLEGPLGGPAVDLDVGF-- 74
PR +PGE+G RT AA A G G+ P P G GP GGP GF
Sbjct: 256 PRGLPGERG---RTGPAGAAGARGNDGQPGPAGP------PGPVGPAGGP------GFPG 300
Query: 75 SPGDDIAGQSLGAAGGQVVHLPGGQLAVPDVEVGQLTHKCLGGIKPTTQSYLLLAQHQHA 134
+PG GA G + P G+ P G P S
Sbjct: 301 APGAKGEAGPTGARGPEGAQGPRGEPGTP------------GSPGPAGAS--------GN 340
Query: 135 LGLDGVIGRQVLATATLRAILVGLPDP-VPGGPVYTTSPSLHQGE 178
G DG+ G + A A A G P P P GP T P +G+
Sbjct: 341 PGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQ 385
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 60.1 bits (144), Expect = 9e-09
Identities = 111/402 (27%), Positives = 139/402 (34%), Gaps = 39/402 (9%)
Query: 445 GETTPLGEARGPCWK-ARGAVPSGRLRGRPGRVA--GASGRRGASQARGGTGR-APARLR 500
G P G P + A G + + G+PG G +G RG+ ARG TG+ P
Sbjct: 859 GRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTS 918
Query: 501 RGRGMPGRVGNGVGEGR----GASEPEGEPEPRARADLEVLQAGFERLQSLPELAERLGG 556
G G PG G +G G P+G P P + L G + + G
Sbjct: 919 GGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLP----GHPGQRGETGFQGKTGP 974
Query: 557 RCPGQVA--HGVLARAGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSR 614
PG V G G + PG G ++ L AA + G P + S
Sbjct: 975 PGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKG----DPGPQGISG 1030
Query: 615 RAGNHRVREIEFGSALLAALNTLGPGSFGA-GL-GAQGPRSSTPECPVVNGSEWGLAAPL 672
+ G +R L PG+ GA GL G +GP+ P PV + E G A
Sbjct: 1031 KDGPAGLRGFPGERGL--------PGAQGAPGLKGGEGPQG--PPGPVGSPGERGSAGTA 1080
Query: 673 SPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIA 732
P G PGRP PG G PG P GR G L A P G
Sbjct: 1081 GPI-GLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRD-GVQGPVGLPGPAGPAGSPGE-D 1137
Query: 733 GRRRRRGWTFAAALRKGAPREQPPASPAAS-PCQAPRAPEKETE-APR----LRGRATAV 786
G + G + PP P P AP + E PR + G+
Sbjct: 1138 GDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDE 1197
Query: 787 APRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPGCR 828
R P PG GL L P G GP G PG R
Sbjct: 1198 GARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPR 1239
Score = 56.6 bits (135), Expect = 1e-07
Identities = 100/404 (24%), Positives = 132/404 (32%), Gaps = 77/404 (19%)
Query: 473 PGRVAGASGRRGASQARGGTG-------RAPARLRRGRGMPGRVGNGVGEG----RGASE 521
P V GA G RG ++G G + L+ RG G++G +G +G +
Sbjct: 773 PRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAG 832
Query: 522 PEGEPEPRARADLEVLQAGFERLQSLPELAERLGGRCPGQVAHGVLARAGLLAAAARPGL 581
P G+P P QAG + +P L G R G + PG
Sbjct: 833 PTGDPGPSG-------QAGEKGKLGVPGLP-------------GYPGRQGPKGSTGFPGF 872
Query: 582 AGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPGS 641
G+ ++ A + G P +RG R G GP
Sbjct: 873 PGANGEKGARGVAGKPG--------PRGQRGPTGPRGSRGARGPTGKP--------GPKG 916
Query: 642 FGAGLGAQGPRSST----PECPVVNGSEWGLAAPLSPER--GSPGRPAFLRSPGLCGPGP 695
G G GP P+ PV G P + G PG+ G GP P
Sbjct: 917 TSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGP-P 975
Query: 696 VPGGLSVPT-------PCGRGAGDFSEADLADRAFP----VRGAGPIAGRRRRRGWTFAA 744
PGG+ P P G ++ P GA G + G A
Sbjct: 976 GPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPA 1035
Query: 745 ALR-----KGAPREQPPASPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSG 799
LR +G P Q +P + P+ P +P RG A P LP PG G
Sbjct: 1036 GLRGFPGERGLPGAQ--GAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQG 1093
Query: 800 LCVLQPFPARSRGL-GVPSQQGPTGSPGCRDRASAPRAGAEAGS 842
P PA +G G QGP G G + P AGS
Sbjct: 1094 ----PPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGS 1133
Score = 49.3 bits (116), Expect = 2e-05
Identities = 115/435 (26%), Positives = 148/435 (34%), Gaps = 92/435 (21%)
Query: 469 LRGRPGRVAGASGRRGASQARGGTGRAPARLRRG-RGMPGRVGNGVGEGR-GASEPEGEP 526
L GRPG V G G+S A+G +G + RG +G PG G GR GA G P
Sbjct: 548 LTGRPGPVGGP----GSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMP 603
Query: 527 -EPRARADLEVLQAGFERLQSLPELAERLGGRCPGQVA-----HGVLARAGLLAAAARPG 580
EP A+ D GF+ L LP G R P G+ G + PG
Sbjct: 604 GEPGAKGD-----RGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPG 658
Query: 581 LAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPG 640
AG R L + P RG+ A G +A ++ GP
Sbjct: 659 EAGP---RGL--------------LGP---RGTPGAP---------GQPGMAGVD--GPP 687
Query: 641 SFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSP-----ERGSPGRPAFLRSPGLCGPGP 695
+G QG P N GL P P E+G G+P PG GP
Sbjct: 688 GPKGNMGPQGEPG--PPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPG 745
Query: 696 VPGG------------------LSVPTPCGRGAGD------FSEADLADRAFP-VRGAGP 730
PG + P P G D S+ + + FP +G
Sbjct: 746 HPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMG 805
Query: 731 IAGRRRRRGWTFAAALRKGAPREQPPASPAASPCQAPRAPEK-ETEAPRLRGRATAVAPR 789
+ G R G G + A P P + +A EK + P L G P+
Sbjct: 806 LKGDRGEVG-QIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPK 864
Query: 790 PLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPGCRD-RASAPRAGAEAGSMETFLR 848
PGF G + + G Q+GPTG G R R + G + S
Sbjct: 865 GSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTS------ 918
Query: 849 NGGLYP--PPSPRAP 861
GG P PP R P
Sbjct: 919 -GGDGPPGPPGERGP 932
Score = 43.9 bits (102), Expect = 7e-04
Identities = 61/208 (29%), Positives = 75/208 (36%), Gaps = 33/208 (15%)
Query: 639 PGSFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSP-----ERGSPGRPAFLRSPGLCGP 693
P G+ +GP P P GL P P +RG PGRP + GL P
Sbjct: 443 PAVVEPGMLVEGPPG--PAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGL--P 498
Query: 694 GPVPGGLSVPTPCGRGAGDFS------------EADLADRAFPVRG-AGP--IAGRRRRR 738
GP L +P R GD S +A L +RG GP + GR
Sbjct: 499 GPPGTMLMLPF---RYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPV 555
Query: 739 GWTFAAALRKGAPREQPPASPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFS 798
G ++ KG + P P Q P P T P RGR A R +P PG
Sbjct: 556 GGPGSSG-AKGESGDPGPQGPRG--VQGPPGP---TGKPGKRGRPGADGGRGMPGEPGAK 609
Query: 799 GLCVLQPFPARSRGLGVPSQQGPTGSPG 826
G P G ++GP G PG
Sbjct: 610 GDRGFDGLPGLPGDKGHRGERGPQGPPG 637
Score = 41.6 bits (96), Expect = 0.003
Identities = 100/402 (24%), Positives = 126/402 (31%), Gaps = 80/402 (19%)
Query: 469 LRGRPGRVA-----GASGRRGASQARGGTGRAPARLRRGRGMPGRVG-NGVGEGRGASEP 522
+RG G + G +G RG RG G AP G PG G +G +G P
Sbjct: 644 MRGEDGEIGPRGLPGEAGPRGLLGPRGTPG-AP-------GQPGMAGVDGPPGPKGNMGP 695
Query: 523 EGEPEPRARADLEVLQAGFERLQSLPELAERLGGRCPGQVA-HGVLARAGLLAAAARPGL 581
+GEP P Q G Q LP +G PG+ G AGL A PG
Sbjct: 696 QGEPGPPG-------QQGNPGPQGLPGPQGPIGP--PGEKGPQGKPGLAGLPGADGPPGH 746
Query: 582 AGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPGS 641
G Q G + P + G V+ + L + G
Sbjct: 747 PGKEGQ----------SGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDG 796
Query: 642 FGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGGLS 701
F G G + E + G PE G GR PG G G L
Sbjct: 797 FPGFKGDMGLKGDRGEVGQI-----GPRGEDGPE-GPKGRAGPTGDPGPSGQAGEKGKLG 850
Query: 702 VPTPCGRGAGDFSEADLADRAFP----VRGAGPIAGRRRRRGWTFAAALRKGAPREQPPA 757
VP G + FP +GA +AG+ RG ++ P
Sbjct: 851 VPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRG-------------QRGPT 897
Query: 758 SPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRG-LGVP 816
P S R T P +G + P P PG G P +G +G P
Sbjct: 898 GPRGS-----RGARGPTGKPGPKGTSGGDGP---PGPPGERG-------PQGPQGPVGFP 942
Query: 817 SQQGPTGSPGCRDRASAPRAGAEAGSMETFLRNGGLYPPPSP 858
+GP G PG P E G G PP P
Sbjct: 943 GPKGPPGPPGKDGLPGHPGQRGETGFQ-------GKTGPPGP 977
Score = 40.8 bits (94), Expect = 0.006
Identities = 124/460 (26%), Positives = 158/460 (34%), Gaps = 76/460 (16%)
Query: 445 GETTPLGEARGPCWKARGAVPSGRLRGRPGRVAGASGRRGASQARGGTGR-APARLRR-- 501
GET P+GE P P G +G PG AG G +G +G +G+ PA LR
Sbjct: 988 GETGPIGERGHPGPPG----PPGE-QGLPG-AAGKEGAKGDPGPQGISGKDGPAGLRGFP 1041
Query: 502 -GRGMPGRVGN-GV--GEG-RGASEPEGEPEPRARADLE--VLQAGFERLQSLPELAERL 554
RG+PG G G+ GEG +G P G P R A + G Q P A
Sbjct: 1042 GERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEK 1101
Query: 555 GGRCPGQVA-HGVLARAGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGS 613
G PG+ G R G+ PG AG ++G G
Sbjct: 1102 GA--PGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIG-----------EPGQ 1148
Query: 614 RRAGNHRVREIEFGSALLAALNTLGPGSFGAGLGAQGPRSST--------------PECP 659
+ + + G L +G G G GPR P P
Sbjct: 1149 KGSKGDKGENGPPGPPGLQG--PVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPP 1206
Query: 660 VVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGP-GPV-PGGLSVPT-PCGR-----GAG 711
G + GL P E+G G + PG GP GP P G P P G G G
Sbjct: 1207 GPIGLQ-GLPGPPG-EKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVG 1264
Query: 712 DFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAAL--------RKGAPREQPPASPAASP 763
+ E A P AG + G + RG A KG P + P P
Sbjct: 1265 EKGEPGEAGNPGPPGEAG-VGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPG-P 1322
Query: 764 CQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGL-GVPSQQGPT 822
P P E P G+ + PG G P P+ G G P ++GP
Sbjct: 1323 VGFPGDPGPPGE-PGPAGQDGVGGDKGEDGDPGQPG----PPGPSGEAGPPGPPGKRGPP 1377
Query: 823 GSPGCRDRASAPRAGAEAGSMETFLRNGGLYPPPSPRAPA 862
G+ G R A EAG+ + G P P+ PA
Sbjct: 1378 GAAGAEGRQGEKGAKGEAGAEGPPGKTG----PVGPQGPA 1413
Score = 37.0 bits (84), Expect = 0.079
Identities = 46/150 (30%), Positives = 60/150 (40%), Gaps = 28/150 (18%)
Query: 455 GPCWKARGAVPSGRLRGRPGRVAGASGRRGASQARGGTGRAPARLRRG------------ 502
GP +A P G+ RG PG AGA GR+G A+G G + G
Sbjct: 1360 GPSGEAGPPGPPGK-RGPPG-AAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPG 1417
Query: 503 ----RGMPGRVGNGVGEG-RGASEPEGEPEPRARADLEVLQA--GFERLQSLPELAERLG 555
RG+PG VG +G GA+ +G P P L L+ G + + P L +G
Sbjct: 1418 PEGLRGIPGPVGE---QGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIG 1474
Query: 556 GRCPGQVAHGVLARAGLLAAAARPGLAGSG 585
PG+ G GL PG G G
Sbjct: 1475 P--PGE--QGEKGDRGLPGTQGSPGAKGDG 1500
Score = 34.7 bits (78), Expect = 0.39
Identities = 56/213 (26%), Positives = 68/213 (31%), Gaps = 22/213 (10%)
Query: 675 ERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCG-------RGA-GDFSEADLADRAFPVR 726
E G PG+P G GP PG P G +GA G+ + PV
Sbjct: 1349 EDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVG 1408
Query: 727 GAGPIA-----GRRRRRGWTFAAALRKGAPREQPPAS---PAASPCQAPRAPEKETEAPR 778
GP G R G L A ++ PP P + + E P
Sbjct: 1409 PQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPG 1468
Query: 779 LRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPGCRDRASAPRAGA 838
L G + P G GL Q P G+P GP G PG
Sbjct: 1469 LIG---LIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKG 1525
Query: 839 EAGSMETFLRNG--GL-YPPPSPRAPAVCVQHL 868
GS + G GL PP SP P +Q L
Sbjct: 1526 NKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQPL 1558
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 60.1 bits (144), Expect = 9e-09
Identities = 111/402 (27%), Positives = 139/402 (34%), Gaps = 39/402 (9%)
Query: 445 GETTPLGEARGPCWK-ARGAVPSGRLRGRPGRVA--GASGRRGASQARGGTGR-APARLR 500
G P G P + A G + + G+PG G +G RG+ ARG TG+ P
Sbjct: 808 GRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTS 867
Query: 501 RGRGMPGRVGNGVGEGR----GASEPEGEPEPRARADLEVLQAGFERLQSLPELAERLGG 556
G G PG G +G G P+G P P + L G + + G
Sbjct: 868 GGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLP----GHPGQRGETGFQGKTGP 923
Query: 557 RCPGQVA--HGVLARAGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSR 614
PG V G G + PG G ++ L AA + G P + S
Sbjct: 924 PGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKG----DPGPQGISG 979
Query: 615 RAGNHRVREIEFGSALLAALNTLGPGSFGA-GL-GAQGPRSSTPECPVVNGSEWGLAAPL 672
+ G +R L PG+ GA GL G +GP+ P PV + E G A
Sbjct: 980 KDGPAGLRGFPGERGL--------PGAQGAPGLKGGEGPQG--PPGPVGSPGERGSAGTA 1029
Query: 673 SPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIA 732
P G PGRP PG G PG P GR G L A P G
Sbjct: 1030 GPI-GLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRD-GVQGPVGLPGPAGPAGSPGE-D 1086
Query: 733 GRRRRRGWTFAAALRKGAPREQPPASPAAS-PCQAPRAPEKETE-APR----LRGRATAV 786
G + G + PP P P AP + E PR + G+
Sbjct: 1087 GDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDE 1146
Query: 787 APRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPGCR 828
R P PG GL L P G GP G PG R
Sbjct: 1147 GARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPR 1188
Score = 56.6 bits (135), Expect = 1e-07
Identities = 100/404 (24%), Positives = 132/404 (32%), Gaps = 77/404 (19%)
Query: 473 PGRVAGASGRRGASQARGGTG-------RAPARLRRGRGMPGRVGNGVGEG----RGASE 521
P V GA G RG ++G G + L+ RG G++G +G +G +
Sbjct: 722 PRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAG 781
Query: 522 PEGEPEPRARADLEVLQAGFERLQSLPELAERLGGRCPGQVAHGVLARAGLLAAAARPGL 581
P G+P P QAG + +P L G R G + PG
Sbjct: 782 PTGDPGPSG-------QAGEKGKLGVPGLP-------------GYPGRQGPKGSTGFPGF 821
Query: 582 AGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPGS 641
G+ ++ A + G P +RG R G GP
Sbjct: 822 PGANGEKGARGVAGKPG--------PRGQRGPTGPRGSRGARGPTGKP--------GPKG 865
Query: 642 FGAGLGAQGPRSST----PECPVVNGSEWGLAAPLSPER--GSPGRPAFLRSPGLCGPGP 695
G G GP P+ PV G P + G PG+ G GP P
Sbjct: 866 TSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGP-P 924
Query: 696 VPGGLSVPT-------PCGRGAGDFSEADLADRAFP----VRGAGPIAGRRRRRGWTFAA 744
PGG+ P P G ++ P GA G + G A
Sbjct: 925 GPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPA 984
Query: 745 ALR-----KGAPREQPPASPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSG 799
LR +G P Q +P + P+ P +P RG A P LP PG G
Sbjct: 985 GLRGFPGERGLPGAQ--GAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQG 1042
Query: 800 LCVLQPFPARSRGL-GVPSQQGPTGSPGCRDRASAPRAGAEAGS 842
P PA +G G QGP G G + P AGS
Sbjct: 1043 ----PPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGS 1082
Score = 49.3 bits (116), Expect = 2e-05
Identities = 115/435 (26%), Positives = 148/435 (34%), Gaps = 92/435 (21%)
Query: 469 LRGRPGRVAGASGRRGASQARGGTGRAPARLRRG-RGMPGRVGNGVGEGR-GASEPEGEP 526
L GRPG V G G+S A+G +G + RG +G PG G GR GA G P
Sbjct: 497 LTGRPGPVGGP----GSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMP 552
Query: 527 -EPRARADLEVLQAGFERLQSLPELAERLGGRCPGQVA-----HGVLARAGLLAAAARPG 580
EP A+ D GF+ L LP G R P G+ G + PG
Sbjct: 553 GEPGAKGD-----RGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPG 607
Query: 581 LAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPG 640
AG R L + P RG+ A G +A ++ GP
Sbjct: 608 EAGP---RGL--------------LGP---RGTPGAP---------GQPGMAGVD--GPP 636
Query: 641 SFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSP-----ERGSPGRPAFLRSPGLCGPGP 695
+G QG P N GL P P E+G G+P PG GP
Sbjct: 637 GPKGNMGPQGEPG--PPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPG 694
Query: 696 VPGG------------------LSVPTPCGRGAGD------FSEADLADRAFP-VRGAGP 730
PG + P P G D S+ + + FP +G
Sbjct: 695 HPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMG 754
Query: 731 IAGRRRRRGWTFAAALRKGAPREQPPASPAASPCQAPRAPEK-ETEAPRLRGRATAVAPR 789
+ G R G G + A P P + +A EK + P L G P+
Sbjct: 755 LKGDRGEVG-QIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPK 813
Query: 790 PLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPGCRD-RASAPRAGAEAGSMETFLR 848
PGF G + + G Q+GPTG G R R + G + S
Sbjct: 814 GSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTS------ 867
Query: 849 NGGLYP--PPSPRAP 861
GG P PP R P
Sbjct: 868 -GGDGPPGPPGERGP 881
Score = 43.9 bits (102), Expect = 7e-04
Identities = 61/208 (29%), Positives = 75/208 (36%), Gaps = 33/208 (15%)
Query: 639 PGSFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSP-----ERGSPGRPAFLRSPGLCGP 693
P G+ +GP P P GL P P +RG PGRP + GL P
Sbjct: 392 PAVVEPGMLVEGPPG--PAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGL--P 447
Query: 694 GPVPGGLSVPTPCGRGAGDFS------------EADLADRAFPVRG-AGP--IAGRRRRR 738
GP L +P R GD S +A L +RG GP + GR
Sbjct: 448 GPPGTMLMLPF---RYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPV 504
Query: 739 GWTFAAALRKGAPREQPPASPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFS 798
G ++ KG + P P Q P P T P RGR A R +P PG
Sbjct: 505 GGPGSSG-AKGESGDPGPQGPRG--VQGPPGP---TGKPGKRGRPGADGGRGMPGEPGAK 558
Query: 799 GLCVLQPFPARSRGLGVPSQQGPTGSPG 826
G P G ++GP G PG
Sbjct: 559 GDRGFDGLPGLPGDKGHRGERGPQGPPG 586
Score = 41.6 bits (96), Expect = 0.003
Identities = 100/402 (24%), Positives = 126/402 (31%), Gaps = 80/402 (19%)
Query: 469 LRGRPGRVA-----GASGRRGASQARGGTGRAPARLRRGRGMPGRVG-NGVGEGRGASEP 522
+RG G + G +G RG RG G AP G PG G +G +G P
Sbjct: 593 MRGEDGEIGPRGLPGEAGPRGLLGPRGTPG-AP-------GQPGMAGVDGPPGPKGNMGP 644
Query: 523 EGEPEPRARADLEVLQAGFERLQSLPELAERLGGRCPGQVA-HGVLARAGLLAAAARPGL 581
+GEP P Q G Q LP +G PG+ G AGL A PG
Sbjct: 645 QGEPGPPG-------QQGNPGPQGLPGPQGPIGP--PGEKGPQGKPGLAGLPGADGPPGH 695
Query: 582 AGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPGS 641
G Q G + P + G V+ + L + G
Sbjct: 696 PGKEGQ----------SGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDG 745
Query: 642 FGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGGLS 701
F G G + E + G PE G GR PG G G L
Sbjct: 746 FPGFKGDMGLKGDRGEVGQI-----GPRGEDGPE-GPKGRAGPTGDPGPSGQAGEKGKLG 799
Query: 702 VPTPCGRGAGDFSEADLADRAFP----VRGAGPIAGRRRRRGWTFAAALRKGAPREQPPA 757
VP G + FP +GA +AG+ RG ++ P
Sbjct: 800 VPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRG-------------QRGPT 846
Query: 758 SPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRG-LGVP 816
P S R T P +G + P P PG G P +G +G P
Sbjct: 847 GPRGS-----RGARGPTGKPGPKGTSGGDGP---PGPPGERG-------PQGPQGPVGFP 891
Query: 817 SQQGPTGSPGCRDRASAPRAGAEAGSMETFLRNGGLYPPPSP 858
+GP G PG P E G G PP P
Sbjct: 892 GPKGPPGPPGKDGLPGHPGQRGETGFQ-------GKTGPPGP 926
Score = 40.8 bits (94), Expect = 0.006
Identities = 124/460 (26%), Positives = 158/460 (34%), Gaps = 76/460 (16%)
Query: 445 GETTPLGEARGPCWKARGAVPSGRLRGRPGRVAGASGRRGASQARGGTGR-APARLRR-- 501
GET P+GE P P G +G PG AG G +G +G +G+ PA LR
Sbjct: 937 GETGPIGERGHPGPPG----PPGE-QGLPG-AAGKEGAKGDPGPQGISGKDGPAGLRGFP 990
Query: 502 -GRGMPGRVGN-GV--GEG-RGASEPEGEPEPRARADLE--VLQAGFERLQSLPELAERL 554
RG+PG G G+ GEG +G P G P R A + G Q P A
Sbjct: 991 GERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEK 1050
Query: 555 GGRCPGQVA-HGVLARAGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGS 613
G PG+ G R G+ PG AG ++G G
Sbjct: 1051 GA--PGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIG-----------EPGQ 1097
Query: 614 RRAGNHRVREIEFGSALLAALNTLGPGSFGAGLGAQGPRSST--------------PECP 659
+ + + G L +G G G GPR P P
Sbjct: 1098 KGSKGDKGENGPPGPPGLQG--PVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPP 1155
Query: 660 VVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGP-GPV-PGGLSVPT-PCGR-----GAG 711
G + GL P E+G G + PG GP GP P G P P G G G
Sbjct: 1156 GPIGLQ-GLPGPPG-EKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVG 1213
Query: 712 DFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAAL--------RKGAPREQPPASPAASP 763
+ E A P AG + G + RG A KG P + P P
Sbjct: 1214 EKGEPGEAGNPGPPGEAG-VGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPG-P 1271
Query: 764 CQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGL-GVPSQQGPT 822
P P E P G+ + PG G P P+ G G P ++GP
Sbjct: 1272 VGFPGDPGPPGE-PGPAGQDGVGGDKGEDGDPGQPG----PPGPSGEAGPPGPPGKRGPP 1326
Query: 823 GSPGCRDRASAPRAGAEAGSMETFLRNGGLYPPPSPRAPA 862
G+ G R A EAG+ + G P P+ PA
Sbjct: 1327 GAAGAEGRQGEKGAKGEAGAEGPPGKTG----PVGPQGPA 1362
Score = 37.0 bits (84), Expect = 0.079
Identities = 46/150 (30%), Positives = 60/150 (40%), Gaps = 28/150 (18%)
Query: 455 GPCWKARGAVPSGRLRGRPGRVAGASGRRGASQARGGTGRAPARLRRG------------ 502
GP +A P G+ RG PG AGA GR+G A+G G + G
Sbjct: 1309 GPSGEAGPPGPPGK-RGPPG-AAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPG 1366
Query: 503 ----RGMPGRVGNGVGEG-RGASEPEGEPEPRARADLEVLQA--GFERLQSLPELAERLG 555
RG+PG VG +G GA+ +G P P L L+ G + + P L +G
Sbjct: 1367 PEGLRGIPGPVGE---QGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIG 1423
Query: 556 GRCPGQVAHGVLARAGLLAAAARPGLAGSG 585
PG+ G GL PG G G
Sbjct: 1424 P--PGE--QGEKGDRGLPGTQGSPGAKGDG 1449
Score = 34.7 bits (78), Expect = 0.39
Identities = 56/213 (26%), Positives = 68/213 (31%), Gaps = 22/213 (10%)
Query: 675 ERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCG-------RGA-GDFSEADLADRAFPVR 726
E G PG+P G GP PG P G +GA G+ + PV
Sbjct: 1298 EDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVG 1357
Query: 727 GAGPIA-----GRRRRRGWTFAAALRKGAPREQPPAS---PAASPCQAPRAPEKETEAPR 778
GP G R G L A ++ PP P + + E P
Sbjct: 1358 PQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPG 1417
Query: 779 LRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPGCRDRASAPRAGA 838
L G + P G GL Q P G+P GP G PG
Sbjct: 1418 LIG---LIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKG 1474
Query: 839 EAGSMETFLRNG--GL-YPPPSPRAPAVCVQHL 868
GS + G GL PP SP P +Q L
Sbjct: 1475 NKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQPL 1507
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 60.1 bits (144), Expect = 9e-09
Identities = 111/402 (27%), Positives = 139/402 (34%), Gaps = 39/402 (9%)
Query: 445 GETTPLGEARGPCWK-ARGAVPSGRLRGRPGRVA--GASGRRGASQARGGTGR-APARLR 500
G P G P + A G + + G+PG G +G RG+ ARG TG+ P
Sbjct: 847 GRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTS 906
Query: 501 RGRGMPGRVGNGVGEGR----GASEPEGEPEPRARADLEVLQAGFERLQSLPELAERLGG 556
G G PG G +G G P+G P P + L G + + G
Sbjct: 907 GGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLP----GHPGQRGETGFQGKTGP 962
Query: 557 RCPGQVA--HGVLARAGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSR 614
PG V G G + PG G ++ L AA + G P + S
Sbjct: 963 PGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKG----DPGPQGISG 1018
Query: 615 RAGNHRVREIEFGSALLAALNTLGPGSFGA-GL-GAQGPRSSTPECPVVNGSEWGLAAPL 672
+ G +R L PG+ GA GL G +GP+ P PV + E G A
Sbjct: 1019 KDGPAGLRGFPGERGL--------PGAQGAPGLKGGEGPQG--PPGPVGSPGERGSAGTA 1068
Query: 673 SPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIA 732
P G PGRP PG G PG P GR G L A P G
Sbjct: 1069 GPI-GLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRD-GVQGPVGLPGPAGPAGSPGE-D 1125
Query: 733 GRRRRRGWTFAAALRKGAPREQPPASPAAS-PCQAPRAPEKETE-APR----LRGRATAV 786
G + G + PP P P AP + E PR + G+
Sbjct: 1126 GDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDE 1185
Query: 787 APRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPGCR 828
R P PG GL L P G GP G PG R
Sbjct: 1186 GARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPR 1227
Score = 56.6 bits (135), Expect = 1e-07
Identities = 100/404 (24%), Positives = 132/404 (32%), Gaps = 77/404 (19%)
Query: 473 PGRVAGASGRRGASQARGGTG-------RAPARLRRGRGMPGRVGNGVGEG----RGASE 521
P V GA G RG ++G G + L+ RG G++G +G +G +
Sbjct: 761 PRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAG 820
Query: 522 PEGEPEPRARADLEVLQAGFERLQSLPELAERLGGRCPGQVAHGVLARAGLLAAAARPGL 581
P G+P P QAG + +P L G R G + PG
Sbjct: 821 PTGDPGPSG-------QAGEKGKLGVPGLP-------------GYPGRQGPKGSTGFPGF 860
Query: 582 AGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPGS 641
G+ ++ A + G P +RG R G GP
Sbjct: 861 PGANGEKGARGVAGKPG--------PRGQRGPTGPRGSRGARGPTGKP--------GPKG 904
Query: 642 FGAGLGAQGPRSST----PECPVVNGSEWGLAAPLSPER--GSPGRPAFLRSPGLCGPGP 695
G G GP P+ PV G P + G PG+ G GP P
Sbjct: 905 TSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGP-P 963
Query: 696 VPGGLSVPT-------PCGRGAGDFSEADLADRAFP----VRGAGPIAGRRRRRGWTFAA 744
PGG+ P P G ++ P GA G + G A
Sbjct: 964 GPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPA 1023
Query: 745 ALR-----KGAPREQPPASPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSG 799
LR +G P Q +P + P+ P +P RG A P LP PG G
Sbjct: 1024 GLRGFPGERGLPGAQ--GAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQG 1081
Query: 800 LCVLQPFPARSRGL-GVPSQQGPTGSPGCRDRASAPRAGAEAGS 842
P PA +G G QGP G G + P AGS
Sbjct: 1082 ----PPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGS 1121
Score = 49.3 bits (116), Expect = 2e-05
Identities = 115/435 (26%), Positives = 148/435 (34%), Gaps = 92/435 (21%)
Query: 469 LRGRPGRVAGASGRRGASQARGGTGRAPARLRRG-RGMPGRVGNGVGEGR-GASEPEGEP 526
L GRPG V G G+S A+G +G + RG +G PG G GR GA G P
Sbjct: 536 LTGRPGPVGGP----GSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMP 591
Query: 527 -EPRARADLEVLQAGFERLQSLPELAERLGGRCPGQVA-----HGVLARAGLLAAAARPG 580
EP A+ D GF+ L LP G R P G+ G + PG
Sbjct: 592 GEPGAKGD-----RGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPG 646
Query: 581 LAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPG 640
AG R L + P RG+ A G +A ++ GP
Sbjct: 647 EAGP---RGL--------------LGP---RGTPGAP---------GQPGMAGVD--GPP 675
Query: 641 SFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSP-----ERGSPGRPAFLRSPGLCGPGP 695
+G QG P N GL P P E+G G+P PG GP
Sbjct: 676 GPKGNMGPQGEPG--PPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPG 733
Query: 696 VPGG------------------LSVPTPCGRGAGD------FSEADLADRAFP-VRGAGP 730
PG + P P G D S+ + + FP +G
Sbjct: 734 HPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMG 793
Query: 731 IAGRRRRRGWTFAAALRKGAPREQPPASPAASPCQAPRAPEK-ETEAPRLRGRATAVAPR 789
+ G R G G + A P P + +A EK + P L G P+
Sbjct: 794 LKGDRGEVG-QIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPK 852
Query: 790 PLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPGCRD-RASAPRAGAEAGSMETFLR 848
PGF G + + G Q+GPTG G R R + G + S
Sbjct: 853 GSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTS------ 906
Query: 849 NGGLYP--PPSPRAP 861
GG P PP R P
Sbjct: 907 -GGDGPPGPPGERGP 920
Score = 43.9 bits (102), Expect = 7e-04
Identities = 61/208 (29%), Positives = 75/208 (36%), Gaps = 33/208 (15%)
Query: 639 PGSFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSP-----ERGSPGRPAFLRSPGLCGP 693
P G+ +GP P P GL P P +RG PGRP + GL P
Sbjct: 431 PAVVEPGMLVEGPPG--PAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGL--P 486
Query: 694 GPVPGGLSVPTPCGRGAGDFS------------EADLADRAFPVRG-AGP--IAGRRRRR 738
GP L +P R GD S +A L +RG GP + GR
Sbjct: 487 GPPGTMLMLPF---RYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPV 543
Query: 739 GWTFAAALRKGAPREQPPASPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFS 798
G ++ KG + P P Q P P T P RGR A R +P PG
Sbjct: 544 GGPGSSG-AKGESGDPGPQGPRG--VQGPPGP---TGKPGKRGRPGADGGRGMPGEPGAK 597
Query: 799 GLCVLQPFPARSRGLGVPSQQGPTGSPG 826
G P G ++GP G PG
Sbjct: 598 GDRGFDGLPGLPGDKGHRGERGPQGPPG 625
Score = 41.6 bits (96), Expect = 0.003
Identities = 100/402 (24%), Positives = 126/402 (31%), Gaps = 80/402 (19%)
Query: 469 LRGRPGRVA-----GASGRRGASQARGGTGRAPARLRRGRGMPGRVG-NGVGEGRGASEP 522
+RG G + G +G RG RG G AP G PG G +G +G P
Sbjct: 632 MRGEDGEIGPRGLPGEAGPRGLLGPRGTPG-AP-------GQPGMAGVDGPPGPKGNMGP 683
Query: 523 EGEPEPRARADLEVLQAGFERLQSLPELAERLGGRCPGQVA-HGVLARAGLLAAAARPGL 581
+GEP P Q G Q LP +G PG+ G AGL A PG
Sbjct: 684 QGEPGPPG-------QQGNPGPQGLPGPQGPIGP--PGEKGPQGKPGLAGLPGADGPPGH 734
Query: 582 AGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPGS 641
G Q G + P + G V+ + L + G
Sbjct: 735 PGKEGQ----------SGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDG 784
Query: 642 FGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGGLS 701
F G G + E + G PE G GR PG G G L
Sbjct: 785 FPGFKGDMGLKGDRGEVGQI-----GPRGEDGPE-GPKGRAGPTGDPGPSGQAGEKGKLG 838
Query: 702 VPTPCGRGAGDFSEADLADRAFP----VRGAGPIAGRRRRRGWTFAAALRKGAPREQPPA 757
VP G + FP +GA +AG+ RG ++ P
Sbjct: 839 VPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRG-------------QRGPT 885
Query: 758 SPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRG-LGVP 816
P S R T P +G + P P PG G P +G +G P
Sbjct: 886 GPRGS-----RGARGPTGKPGPKGTSGGDGP---PGPPGERG-------PQGPQGPVGFP 930
Query: 817 SQQGPTGSPGCRDRASAPRAGAEAGSMETFLRNGGLYPPPSP 858
+GP G PG P E G G PP P
Sbjct: 931 GPKGPPGPPGKDGLPGHPGQRGETGFQ-------GKTGPPGP 965
Score = 40.8 bits (94), Expect = 0.006
Identities = 124/460 (26%), Positives = 158/460 (34%), Gaps = 76/460 (16%)
Query: 445 GETTPLGEARGPCWKARGAVPSGRLRGRPGRVAGASGRRGASQARGGTGR-APARLRR-- 501
GET P+GE P P G +G PG AG G +G +G +G+ PA LR
Sbjct: 976 GETGPIGERGHPGPPG----PPGE-QGLPG-AAGKEGAKGDPGPQGISGKDGPAGLRGFP 1029
Query: 502 -GRGMPGRVGN-GV--GEG-RGASEPEGEPEPRARADLE--VLQAGFERLQSLPELAERL 554
RG+PG G G+ GEG +G P G P R A + G Q P A
Sbjct: 1030 GERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEK 1089
Query: 555 GGRCPGQVA-HGVLARAGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGS 613
G PG+ G R G+ PG AG ++G G
Sbjct: 1090 GA--PGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIG-----------EPGQ 1136
Query: 614 RRAGNHRVREIEFGSALLAALNTLGPGSFGAGLGAQGPRSST--------------PECP 659
+ + + G L +G G G GPR P P
Sbjct: 1137 KGSKGDKGENGPPGPPGLQG--PVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPP 1194
Query: 660 VVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGP-GPV-PGGLSVPT-PCGR-----GAG 711
G + GL P E+G G + PG GP GP P G P P G G G
Sbjct: 1195 GPIGLQ-GLPGPPG-EKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVG 1252
Query: 712 DFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAAL--------RKGAPREQPPASPAASP 763
+ E A P AG + G + RG A KG P + P P
Sbjct: 1253 EKGEPGEAGNPGPPGEAG-VGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPG-P 1310
Query: 764 CQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGL-GVPSQQGPT 822
P P E P G+ + PG G P P+ G G P ++GP
Sbjct: 1311 VGFPGDPGPPGE-PGPAGQDGVGGDKGEDGDPGQPG----PPGPSGEAGPPGPPGKRGPP 1365
Query: 823 GSPGCRDRASAPRAGAEAGSMETFLRNGGLYPPPSPRAPA 862
G+ G R A EAG+ + G P P+ PA
Sbjct: 1366 GAAGAEGRQGEKGAKGEAGAEGPPGKTG----PVGPQGPA 1401
Score = 37.0 bits (84), Expect = 0.079
Identities = 46/150 (30%), Positives = 60/150 (40%), Gaps = 28/150 (18%)
Query: 455 GPCWKARGAVPSGRLRGRPGRVAGASGRRGASQARGGTGRAPARLRRG------------ 502
GP +A P G+ RG PG AGA GR+G A+G G + G
Sbjct: 1348 GPSGEAGPPGPPGK-RGPPG-AAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPG 1405
Query: 503 ----RGMPGRVGNGVGEG-RGASEPEGEPEPRARADLEVLQA--GFERLQSLPELAERLG 555
RG+PG VG +G GA+ +G P P L L+ G + + P L +G
Sbjct: 1406 PEGLRGIPGPVGE---QGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIG 1462
Query: 556 GRCPGQVAHGVLARAGLLAAAARPGLAGSG 585
PG+ G GL PG G G
Sbjct: 1463 P--PGE--QGEKGDRGLPGTQGSPGAKGDG 1488
Score = 34.7 bits (78), Expect = 0.39
Identities = 56/213 (26%), Positives = 68/213 (31%), Gaps = 22/213 (10%)
Query: 675 ERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCG-------RGA-GDFSEADLADRAFPVR 726
E G PG+P G GP PG P G +GA G+ + PV
Sbjct: 1337 EDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVG 1396
Query: 727 GAGPIA-----GRRRRRGWTFAAALRKGAPREQPPAS---PAASPCQAPRAPEKETEAPR 778
GP G R G L A ++ PP P + + E P
Sbjct: 1397 PQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPG 1456
Query: 779 LRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPGCRDRASAPRAGA 838
L G + P G GL Q P G+P GP G PG
Sbjct: 1457 LIG---LIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKG 1513
Query: 839 EAGSMETFLRNG--GL-YPPPSPRAPAVCVQHL 868
GS + G GL PP SP P +Q L
Sbjct: 1514 NKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQPL 1546
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 60.1 bits (144), Expect = 9e-09
Identities = 127/455 (27%), Positives = 147/455 (32%), Gaps = 85/455 (18%)
Query: 440 RGARAGETTPLGEARGPCWKARGAVPSGRLRGRPGRVA--------------------GA 479
RG G+ PLG P K + VP L G PGR G
Sbjct: 848 RGGPNGDPGPLGP---PGEKGKLGVPG--LPGYPGRQGPKGSIGFPGFPGANGEKGGRGT 902
Query: 480 SGRRGASQARGGTGRAPARLRRG-RGMPGRVGNGVGEG----------RGASEPEGEPEP 528
G+ G RG TG R RG G PG GN G+G G P G P P
Sbjct: 903 PGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGP 962
Query: 529 RARADLEVLQAGFERLQSLPELAERLG--GRC-----PGQVA-HGVLARAGLLAAAARPG 580
+ G + L P G G+ PG V G G + PG
Sbjct: 963 KGPPG----PPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPG 1018
Query: 581 LAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPG 640
G ++ L A + G P + G +R L PG
Sbjct: 1019 PPGPPGEQGLPGLAGKEG----TKGDPGPAGLPGKDGPPGLRGFPGDRGL--------PG 1066
Query: 641 SFGA-GL-GAQGPRSSTPECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPG 698
GA GL G +GP P P + E G A P G PGRP PG G PG
Sbjct: 1067 PVGALGLKGNEGPPG--PPGPAGSPGERGPAGAAGPI-GIPGRPGPQGPPGPAGEKGAPG 1123
Query: 699 GLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIA-----GRRRRRGWTFAAALRKGAPRE 753
P GR G L A PV G G ++G KG E
Sbjct: 1124 EKGPQGPAGRD-GLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKG-------SKGDKGE 1175
Query: 754 QPPASPAA--SPCQAPRAPEKETE-APR----LRGRATAVAPRPLPAAPGFSGLCVLQPF 806
Q P P P P + E PR L G+ PR P PG GL L
Sbjct: 1176 QGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGP 1235
Query: 807 PARSRGLGVPSQQGPTGSPGCRDRASAPRAGAEAG 841
P G Q GP G PG R + AP A G
Sbjct: 1236 PGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQG 1270
Score = 48.1 bits (113), Expect = 3e-05
Identities = 107/414 (25%), Positives = 136/414 (32%), Gaps = 64/414 (15%)
Query: 445 GETTPLGEARGPCWKARGAVPSGR--LRGRPGRV--AGASGRRGASQARGGTGRAPARLR 500
G P GE P K P+GR L+G G AG G G +G G +
Sbjct: 1111 GPPGPAGEKGAPGEKGPQG-PAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGS 1169
Query: 501 RG----RGMPGRVGNGVGEGR-GASEPEGEPEPRARADLEVLQAGFERLQSLPELAERLG 555
+G +G PG G G+ G S +GEP PR + L Q G E + P +G
Sbjct: 1170 KGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGL-FGQKGDEGPRGFPGPPGPVG 1228
Query: 556 GR-CPGQVAH-GVLARAGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGS 613
+ PG G G + PG G GG G+
Sbjct: 1229 LQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGI-----------GN 1277
Query: 614 RRAGNHRVREIEFGSALLAALNTLGPGSFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLS 673
A + E G PG G G G GP+ E S G A P
Sbjct: 1278 PGAVGEKGEPGEAGE----------PGLPGEG-GPPGPKGERGEKGESGPS--GAAGPPG 1324
Query: 674 PERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGA-----GDFSEADLADRAFPVRGA 728
P +G PG SPG G PG P P G+ GD E P
Sbjct: 1325 P-KGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEP 1383
Query: 729 GPIAGRRRRRGWTFAAALRKGAPREQPPASPAASPC-QAPRAPEKETEAPRLRGRATAVA 787
GP G P ++ P PA Q + + E G+ +
Sbjct: 1384 GP-----------------SGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIG 1426
Query: 788 PRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPGCRDRASAPRAGAEAG 841
P+ P PG GL + P P +GL P GP G PG P ++G
Sbjct: 1427 PQGAPGKPGPDGLRGI-PGPVGEQGL--PGSPGPDGPPGPMGPPGLPGLKGDSG 1477
Score = 46.6 bits (109), Expect = 1e-04
Identities = 97/376 (25%), Positives = 114/376 (30%), Gaps = 37/376 (9%)
Query: 502 GRGMPGR---VGNGVGEGRGASEPEGEPEPRARADLEVLQAGFERLQSLPELAERLG--G 556
G GMP + G+G RG +GEP L G E LP +G G
Sbjct: 431 GPGMPANQDTIYEGIGGPRGEKGQKGEPAIIEPGMLIEGPPGPEGPAGLPGPPGTMGPTG 490
Query: 557 RCPGQVAHGVLARAGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRA 616
+ G R GL A PG G+ + G +G +
Sbjct: 491 QVGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAG----------SKGPMVS 540
Query: 617 GNHRVREIEFGSALLAALNTLGPGSFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSPER 676
+ A LA GP G GP P + G E G P P R
Sbjct: 541 AQESQAQAILQQARLALRGPAGPMGLTGRPGPVGP----PGSGGLKG-EPGDVGPQGP-R 594
Query: 677 GSPGRPAFLRSPGLCGPGPVPGGLSVPTPCG----RG----AGDFSEADLADRAFPVRGA 728
G G P PG G G +P G RG AG E P
Sbjct: 595 GVQGPPGPAGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPP 654
Query: 729 GPIAGRRRRRGWTFAAALRKGAPREQPPAS---PAASPCQAPRAPEKETEAPRLRGRATA 785
GP G RG R G P E P P P P P T G
Sbjct: 655 GP-PGDDGERGDDGEVGPR-GLPGEPGPRGLLGPKGPP--GPPGPPGVTGMDGQPGPKGN 710
Query: 786 VAPRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPGCRDRASAPRAGAEAGSMET 845
V P+ P PG G Q P +G P ++GP G PG A G
Sbjct: 711 VGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGP 770
Query: 846 FLRNGGLYPPPSPRAP 861
GG PP P+ P
Sbjct: 771 PGEKGG-QGPPGPQGP 785
Score = 45.1 bits (105), Expect = 3e-04
Identities = 104/397 (26%), Positives = 134/397 (33%), Gaps = 65/397 (16%)
Query: 471 GRPGR--VAGASGRRGASQARGGTGR-APARLRRGRGMPGRVGNGVGEGRGASEPEGEPE 527
G PG+ + G G+RG + +G TG P + +G G G +GE RG P G P
Sbjct: 967 GPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGP-MGE-RGHPGPPGPPG 1024
Query: 528 PRARADLEVLQ--------AGFERLQSLPELAERLGGR-CPGQVAHGVLARAGLLAAAAR 578
+ L + AG P L G R PG V G L G
Sbjct: 1025 EQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPV--GALGLKGNEGPPGP 1082
Query: 579 PGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTL- 637
PG AGS +R A AA +G + +G + E G A + L
Sbjct: 1083 PGPAGSPGERGPAGAAGPIG-----IPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQ 1137
Query: 638 GPGSFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGP-GPV 696
GP G GP P +G + + P ++GS G PG GP GP+
Sbjct: 1138 GPVGLPGPAGPVGP-------PGEDGDKGEIGEP--GQKGSKGDKGEQGPPGPTGPQGPI 1188
Query: 697 -----PGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIA-----GRRRRRGWTFAAAL 746
G P P G+ + D R FP GP+ G +G T
Sbjct: 1189 GQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFP-GPPGPVGLQGLPGPPGEKGETGDVG- 1246
Query: 747 RKGAPREQPPASPAASP-CQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQP 805
+ G P P P+ +P P+ P P G P PG G P
Sbjct: 1247 QMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGG----PP 1302
Query: 806 FPARSRG----------------LGVPSQQGPTGSPG 826
P RG G P GP GSPG
Sbjct: 1303 GPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPG 1339
Score = 44.3 bits (103), Expect = 5e-04
Identities = 120/449 (26%), Positives = 149/449 (33%), Gaps = 52/449 (11%)
Query: 445 GETTPLGEARGPCWKARGAVPSGRLRGRPGRVAGASGRRGASQARGGTGR-APARLRR-- 501
GET P+GE P P G +G PG +AG G +G G G+ P LR
Sbjct: 1006 GETGPMGERGHPGPPG----PPGE-QGLPG-LAGKEGTKGDPGPAGLPGKDGPPGLRGFP 1059
Query: 502 -GRGMPGRVG----NGVGEGRGASEPEGEPEPRARADLE--VLQAGFERLQSLPELAERL 554
RG+PG VG G G P G P R A + G Q P A
Sbjct: 1060 GDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEK 1119
Query: 555 GGRCPGQVA-HGVLARAGLLAAAARPGLAGS----------------GVQRALALAAAQL 597
G PG+ G R GL PG AG G + + Q
Sbjct: 1120 GA--PGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQG 1177
Query: 598 GGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPGSFGAGLGAQGPRSSTPE 657
T P + G A + G L GP F G G + P
Sbjct: 1178 PPGPTGPQGPIGQPGPSGADGEPGPRGQQG--LFGQKGDEGPRGFPGPPGPVGLQG-LPG 1234
Query: 658 CPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGA--GDFSE 715
P G E G + P G PG +PG GP PGG+ P G G+ E
Sbjct: 1235 PPGEKG-ETGDVGQMGPP-GPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGE 1292
Query: 716 ADLADRAFPVRGAGPIAGRRRRRGWTFAAALR--KGAPREQPPASPAASPCQAPRAPEKE 773
L P G G + G + AA KG P + P + P P P
Sbjct: 1293 PGLPGEGGPPGPKGE-RGEKGESGPSGAAGPPGPKGPPGDDGPKG-SPGPVGFPGDPGPP 1350
Query: 774 TEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRG-LGVPSQQGPTGSPGCRDRAS 832
E P G+ + PG +G P P G G P ++GP G G R
Sbjct: 1351 GE-PGPAGQDGPPGDKGDDGEPGQTG----SPGPTGEPGPSGPPGKRGPPGPAGPEGRQG 1405
Query: 833 APRAGAEAGSMETFLRNGGLYPPPSPRAP 861
A EAG + G + P +P P
Sbjct: 1406 EKGAKGEAGLEGPPGKTGPIGPQGAPGKP 1434
Score = 39.7 bits (91), Expect = 0.012
Identities = 66/253 (26%), Positives = 83/253 (32%), Gaps = 55/253 (21%)
Query: 647 GAQGPRSST--PECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGGLSV-- 702
G QGP+ S P P NG + G RG+PG+P G GP G +
Sbjct: 877 GRQGPKGSIGFPGFPGANGEKGG--------RGTPGKPGPRGQRGPTGPRGERGPRGITG 928
Query: 703 -PTPCGRGAGDFSEADLADRA---------FPVRGAGP-------IAGRRRRRGWTFAAA 745
P P G GD +R FP P + G +RG T
Sbjct: 929 KPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQG 988
Query: 746 LR-----------KGAPREQPPASPAASPCQAPRAPEKETEAPRLRGR-ATAVAPRP--L 791
+G E P P P P E P L G+ T P P L
Sbjct: 989 KTGPPGPPGVVGPQGPTGETGPMGERGHP--GPPGPPGEQGLPGLAGKEGTKGDPGPAGL 1046
Query: 792 PAA---PGFSGLCVLQPFPARSRGLGVPSQQGPTGSPGCRDRASAPRAGAEAGSMETFLR 848
P PG G + P LG+ +GP G PG A +P AG+
Sbjct: 1047 PGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPG---PAGSPGERGPAGAAGPI-- 1101
Query: 849 NGGLYPPPSPRAP 861
G+ P P+ P
Sbjct: 1102 --GIPGRPGPQGP 1112
Score = 38.9 bits (89), Expect = 0.021
Identities = 109/426 (25%), Positives = 135/426 (31%), Gaps = 98/426 (23%)
Query: 441 GARA--GETTPLGEARGPCWKARGAVPSGR-LRGRPGRVAGASGRRGASQARGGTGRA-- 495
GAR G+T P G+ RG + +P + RG PG +G G G RG G
Sbjct: 616 GARGMPGQTGPKGD-RG--FDGLAGLPGEKGHRGDPGP-SGPPGPPGDDGERGDDGEVGP 671
Query: 496 --------PARLRRGRGMPGRVG-------NGVGEGRGASEPEGEPEPRARADLEVLQAG 540
P L +G PG G +G +G P+GEP P Q G
Sbjct: 672 RGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPG-------QQG 724
Query: 541 FERLQSLPELAERLGGRCPGQVAHGVLARAGLLAAAARPGLAGSGVQRALALAAAQLGGW 600
Q LP +G PG+ G L + GL PG G + GG
Sbjct: 725 NPGAQGLPGPQGAIGP--PGE--KGPLGKPGL---PGMPGADGPPGHPGKEGPPGEKGGQ 777
Query: 601 TTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLG-------PGSFG--------AG 645
P +G G R ++ + T G PG G
Sbjct: 778 -----GPPGPQGP--IGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGE 830
Query: 646 LGAQGPRSST-PECPVVNGSEWGLAAPLSP--ERGSPGRPAFLRSPGLCGPGPVPGGLSV 702
+G GPR PE P G G PL P E+G G P PG GP G
Sbjct: 831 IGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGSIGFPGF 890
Query: 703 PTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALRKGAPREQPPASPAAS 762
P G G RG G R +RG P P
Sbjct: 891 PGANGEKGG--------------RGTPGKPGPRGQRG----------------PTGP--- 917
Query: 763 PCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPT 822
+ R P T P +G + P P G +G FP G P + G
Sbjct: 918 --RGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLP 975
Query: 823 GSPGCR 828
G PG R
Sbjct: 976 GHPGQR 981
Score = 37.7 bits (86), Expect = 0.047
Identities = 118/451 (26%), Positives = 141/451 (31%), Gaps = 90/451 (19%)
Query: 445 GETTPLGEARGPCWKARGAVPSGRLRGRPGRVA--GASGRRGASQARGGTGR-APARLRR 501
GE P G GP PSG G PG G G++G RG G P L+
Sbjct: 1174 GEQGPPGPT-GPQGPIGQPGPSGA-DGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQG 1231
Query: 502 GRGMPGRVGNGVGEGRGASEPEGEPEPRARADLEVLQAGFERLQSLPELAERLGGRCPGQ 561
G PG G G+ P G P PR + G + Q P G
Sbjct: 1232 LPGPPGEKGETGDVGQMG--PPGPPGPRGPSGAP----GADGPQGPP-----------GG 1274
Query: 562 VAH-GVLARAGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHR 620
+ + G + G A PGL G G P RG +
Sbjct: 1275 IGNPGAVGEKGEPGEAGEPGLPGEGGPPG-----------------PKGERGEKGESGP- 1316
Query: 621 VREIEFGSALLAALNTLGPGSFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSP--ERGS 678
S GP G+ GP P P G E G A P ++G
Sbjct: 1317 -------SGAAGPPGPKGPPGDDGPKGSPGP-VGFPGDPGPPG-EPGPAGQDGPPGDKGD 1367
Query: 679 PGRPAFLRSPGLCG-PGPV--PGGLSVPTPCGRGA--GDFSEADLADRAFPVRGAGPIAG 733
G P SPG G PGP PG P P G G+ A P GPI G
Sbjct: 1368 DGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPI-G 1426
Query: 734 RRRRRGWTFAAALR-----------KGAPREQPPASPAASP----CQAPRAPEKETEAPR 778
+ G LR G+P P P P + P+ E P
Sbjct: 1427 PQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPG 1486
Query: 779 L------RGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPGCRDRAS 832
L G R LP G SG P +G+ PS GP G PG
Sbjct: 1487 LIGLIGPPGEQGEKGDRGLPGPQGSSG-------PKGEQGITGPS--GPIGPPGPPGLPG 1537
Query: 833 AP-RAGAEAGSMETFLRNGGLYP-PPSPRAP 861
P GA+ S T + +P PP P P
Sbjct: 1538 PPGPKGAKGSSGPTGPKGEAGHPGPPGPPGP 1568
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 58.2 bits (139), Expect = 3e-08
Identities = 107/405 (26%), Positives = 131/405 (32%), Gaps = 100/405 (24%)
Query: 470 RGRPGRVAGASGRRGASQARGGTGR----APARLRRGRGMPGRVGN----GVGEGRGASE 521
RGRPG + GA+G RG ARG G+ P G PG G G GA
Sbjct: 308 RGRPG-LPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPG 366
Query: 522 PEGEPEPRARADLEVLQAGFERLQSLPELAERLGGRCPGQVAH-GVLARAGLLAAAARPG 580
GEP P+ A G + P + GG+ G++ G+ GL+ A PG
Sbjct: 367 QRGEPGPQGHA-------GAQGPPGPPGINGSPGGK--GEMGPAGIPGAPGLMGARGPPG 417
Query: 581 LAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPG 640
AG+ +P LR G+ PG
Sbjct: 418 PAGANG-------------------APGLRGGAGE-----------------------PG 435
Query: 641 SFGAGLGAQGPRSSTPEC--PVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPG 698
GA G GPR E P V G++ + GSPG P PG G PG
Sbjct: 436 KNGAK-GEPGPRGERGEAGIPGVPGAKGE-----DGKDGSPGEPGANGLPGAAGERGAPG 489
Query: 699 --GLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALRKGAPREQPP 756
G + P G E A P RGA AG R G +R G P P
Sbjct: 490 FRGPAGPNGIPGEKGPAGERGAPGPAGP-RGA---AGEPGRDGVPGGPGMR-GMPGS--P 542
Query: 757 ASPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGVP 816
P + P + E+ P G + PR P GF P G P
Sbjct: 543 GGPGSDGKPGPPGSQGESGRPGPPGPS---GPRGQPGVMGF---------PGPKGNDGAP 590
Query: 817 SQQGPTGSPGCRDRASAPRAGAEAGSMETFLRNGGLYPPPSPRAP 861
+ G G PG P E G PP P P
Sbjct: 591 GKNGERGGPGGPGPQGPPGKNGETGPQ----------GPPGPTGP 625
Score = 57.8 bits (138), Expect = 4e-08
Identities = 121/461 (26%), Positives = 137/461 (29%), Gaps = 67/461 (14%)
Query: 441 GARAGETTPLGEARGPCWKARGAVPSGRLRGRPGRVAGASGRRGASQARGGTGRAPARLR 500
G G+T P G G P G+PG G G GA A GG G A A
Sbjct: 626 GGDKGDTGPPGPQGLQGLPGTGGPPGEN--GKPGE-PGPKGDAGAPGAPGGKGDAGAPGE 682
Query: 501 RG----RGMPGRVGN----GVGEGRGASEPEGEPEPRARADLEVLQAGFERLQSLPELAE 552
RG G PG G G G+GA+ P G P AG LQ +P
Sbjct: 683 RGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGA----------AGTPGLQGMPGERG 732
Query: 553 RLGGRCP--------GQVAHGVLARAGLLAA---------AARPGLAGSGVQRALALAAA 595
LG P G A GV + G A +PG G G L A
Sbjct: 733 GLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAG 792
Query: 596 QLG--------GWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPGSFGAGLG 647
G G P + G R GP G
Sbjct: 793 PRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAG 852
Query: 648 AQGPRSSTPECPVVNGSEWGLAAPLSP-ERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPC 706
GP+ E GS G A P RG PG P +PG GP PG P P
Sbjct: 853 PPGPQGVKGE----RGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPA 908
Query: 707 GRGAGDFS---EADLADRAFPVRGAGPIA-GRRRRRGWTFAAALRKGAPREQPPASPAAS 762
G S D P P A G G A + PP P
Sbjct: 909 GNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPR 968
Query: 763 PCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPT 822
P+ + E+ P G + P P G GL P R G G
Sbjct: 969 GSPGPQGVKGESGKPGANGLSGERGP---PGPQGLPGLAGTAGEPGRDGNPGSDGLPGRD 1025
Query: 823 GSPGCR-DRASAPRAGAEAGSMETFLRNGGLYPPPSPRAPA 862
GSPG + DR GA G PP P PA
Sbjct: 1026 GSPGGKGDRGENGSPGAPGAP--------GHPGPPGPVGPA 1058
Score = 57.4 bits (137), Expect = 6e-08
Identities = 113/442 (25%), Positives = 142/442 (32%), Gaps = 105/442 (23%)
Query: 440 RGARAGETTPLGEARGPCWKARGAVPSGR-LRGRPGRVAG--ASGRRGASQARGGTGR-A 495
RGA G P G A P R VP G +RG PG G + G+ G ++G +GR
Sbjct: 509 RGA-PGPAGPRGAAGEP---GRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPG 564
Query: 496 PARLRRGRGMPGRVG-------------NGVGEGRGASEPEGEPEPRARADLE------- 535
P RG PG +G NG G G P+G P +
Sbjct: 565 PPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTG 624
Query: 536 -------VLQAGFERLQSLPELAERLGGRCPGQVAHGVLARAGLLAAAARPGLAGSGVQR 588
G + LQ LP G PG+ +G G A PG G +
Sbjct: 625 PGGDKGDTGPPGPQGLQGLPGT-----GGPPGE--NGKPGEPGPKGDAGAPGAPGG---K 674
Query: 589 ALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPGSFGAGLGA 648
A A + G +P LR G+ GP G GA
Sbjct: 675 GDAGAPGERGP-PGLAGAPGLRGGA------------------------GPPGPEGGKGA 709
Query: 649 QGP-----RSSTPECPVVNGSEWGLAAP-LSPERGSPGRPAFLRSPGLCGPGPVPGGLSV 702
GP + TP + G GL +P ++G PG P PG GP G +
Sbjct: 710 AGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGP 769
Query: 703 PTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAAL--------------RK 748
P P G+ GD E A + G G R G A +
Sbjct: 770 PGPAGQ-PGDKGEGG-APGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGER 827
Query: 749 GAPREQ----PPASPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQ 804
GAP E+ PP P P G R P PG +G +
Sbjct: 828 GAPGEKGEGGPPGVAGPPGGSGPAGPP---------GPQGVKGERGSPGGPGAAGFPGAR 878
Query: 805 PFPARSRGLGVPSQQGPTGSPG 826
P G P GP+GSPG
Sbjct: 879 GLPGPPGSNGNPGPPGPSGSPG 900
Score = 55.5 bits (132), Expect = 2e-07
Identities = 116/412 (28%), Positives = 140/412 (33%), Gaps = 63/412 (15%)
Query: 445 GETTPLGEARGPCWKARGAVPSGRLRGRPGRV-----AGASGRRGASQARGGTGRAPARL 499
GE P G A A+G + G PG AG G G ARG G A A
Sbjct: 369 GEPGPQGHAG-----AQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGAN- 422
Query: 500 RRGRGMPGRVGNGVGEGRGASEPEGEPEPRARADLEVLQAGFERLQSLPELAERLGGRCP 559
G PG G G GE G + +GEP PR +AG + + G P
Sbjct: 423 ----GAPGLRG-GAGEP-GKNGAKGEPGPRGERG----EAGIPGVPGAKGEDGKDGS--P 470
Query: 560 GQV-AHGVLARAGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGN 618
G+ A+G+ AG A G AG A + G +P G R A
Sbjct: 471 GEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERG-------APG-PAGPRGAAG 522
Query: 619 HRVREIEFGSALLAAL--NTLGPGSFG--AGLGAQG----PRSSTPECPVVNGSEWGLAA 670
R+ G + + + GPGS G G+QG P P P G
Sbjct: 523 EPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPG 582
Query: 671 PLSPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGP 730
P + G+PG+ PG GP PG P G D D P GP
Sbjct: 583 PKGND-GAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPP----GP 637
Query: 731 IAGRRRRRGWTFAAALRKGAPREQPPASPAASP----------CQAPRAPEKETEAPRLR 780
G + G T G P E P A +P R P AP LR
Sbjct: 638 -QGLQGLPG-TGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLR 695
Query: 781 GRATAVAPRP------LPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPG 826
G A P P PG +G LQ P GLG P +G G PG
Sbjct: 696 GGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPG 747
Score = 52.4 bits (124), Expect = 2e-06
Identities = 112/424 (26%), Positives = 138/424 (32%), Gaps = 98/424 (23%)
Query: 432 GIEAAVLLRGARA--GETTPLGEARGPCWKARGAVPSGRLRGRPGRVA--GASGRR---- 483
GI ++G R G GE P K +P G PG + GA G R
Sbjct: 255 GIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGEN--GAPGPMGPRGAPGERGRPG 312
Query: 484 --GASQARGGTGRAPARLRRG-------RGMPGRVG-------NGVGEGRGASEPEGEPE 527
GA+ ARG G + + G G PG G G GA GEP
Sbjct: 313 LPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPG 372
Query: 528 PRARADLEVLQAGFERLQSLPELAERLGGRCPGQVA-HGVLARAGLLAAAARPGLAGSGV 586
P+ AG + P + GG+ G++ G+ GL+ A PG AG+
Sbjct: 373 PQG-------HAGAQGPPGPPGINGSPGGK--GEMGPAGIPGAPGLMGARGPPGPAGAN- 422
Query: 587 QRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPGSFGAGL 646
+P LR G+ PG GA
Sbjct: 423 ------------------GAPGLRGGAGE-----------------------PGKNGA-K 440
Query: 647 GAQGPRSSTPEC--PVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPG--GLSV 702
G GPR E P V G A + GSPG P PG G PG G +
Sbjct: 441 GEPGPRGERGEAGIPGVPG-----AKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAG 495
Query: 703 PTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALRKGAPREQPPASPAAS 762
P G E A P RGA AG R G +R G P P P +
Sbjct: 496 PNGIPGEKGPAGERGAPGPAGP-RGA---AGEPGRDGVPGGPGMR-GMPGS--PGGPGSD 548
Query: 763 PCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPT 822
P + E+ P G PR P GF G P ++ G P GP
Sbjct: 549 GKPGPPGSQGESGRP---GPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQ 605
Query: 823 GSPG 826
G PG
Sbjct: 606 GPPG 609
Score = 50.4 bits (119), Expect = 7e-06
Identities = 121/452 (26%), Positives = 144/452 (31%), Gaps = 89/452 (19%)
Query: 426 AVGLAGGIEAAVLLRGARAGETTPLGEARGPCW--KARGAVPSGRLRGRPGRVAGASGRR 483
A GL GG A + GE P GE RG GA G PG GA+G
Sbjct: 424 APGLRGG--AGEPGKNGAKGEPGPRGE-RGEAGIPGVPGAKGEDGKDGSPGE-PGANGLP 479
Query: 484 GASQARGGTG-RAPARLRRGRGMPGRVGNGVGEGRGASEPEGEPEPRARADLEVLQAGFE 542
GA+ RG G R PA G+PG G GE RGA P G PR A + G +
Sbjct: 480 GAAGERGAPGFRGPAG---PNGIPGEKGPA-GE-RGAPGPAG---PRGAAG----EPGRD 527
Query: 543 RLQSLPELAERLGGRCPGQVAHGVLARAGLLAAAARPGLAGSGVQRALALAAAQLGGWTT 602
+ P + + G G + G G + RPG G R G
Sbjct: 528 GVPGGPGM-RGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPR----------GQPG 576
Query: 603 CVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPGSFGAGLGAQGPRSSTPECPVVN 662
+ P + G + R GPG G G QGP P N
Sbjct: 577 VMGFPGPKGNDGAPGKNGERG--------------GPG----GPGPQGP-------PGKN 611
Query: 663 GSEWGLAAPLSP--------ERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGAGDFS 714
G E G P P + G PG PG GP G P P G +
Sbjct: 612 G-ETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGA 670
Query: 715 EADLADRAFP-VRGAGPIAGRRRRRGWTFAAALRKGAPREQPPASPAASPCQA------- 766
D P RG +AG RG G PP P A+
Sbjct: 671 PGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGE 730
Query: 767 --------PRAPEKETEAPRLRGRATAVAPR--------PLPAA-PGFSGLCVLQPFPAR 809
P+ + E P G PR P PA PG G P
Sbjct: 731 RGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGI 790
Query: 810 SRGLGVPSQQGPTGSPGCRDRASAPRAGAEAG 841
+ G P ++G TG PG AP E G
Sbjct: 791 AGPRGSPGERGETGPPGPAGFPGAPGQNGEPG 822
Score = 48.9 bits (115), Expect = 2e-05
Identities = 127/454 (27%), Positives = 157/454 (34%), Gaps = 72/454 (15%)
Query: 428 GLAGGIEAAVLLRGA--RAGETTPLGEARGPCWKARGAVPSGR-LRGRPGRVAGASGRRG 484
G A G+ RG+ GET P G A P + P G+ RG PG G G G
Sbjct: 782 GGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGE-KGEGGPPG 840
Query: 485 ASQARGGTGRA----PARLRRGRGMPGRVGN-GVGEGRGASEP---EGEPEPRARADLEV 536
+ GG+G A P ++ RG PG G G RG P G P P
Sbjct: 841 VAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPG------ 894
Query: 537 LQAGFERLQSLPELAERLGGRCPGQVAHGVLARAGLLAAAARPGLAGSGVQRALALAAAQ 596
+G P A G PG + GV +G A +PG GS + A
Sbjct: 895 -PSGSPGKDGPPGPAGNTGA--PG--SPGV---SGPKGDAGQPGEKGSPGAQGPPGAPGP 946
Query: 597 LG--GWTTC--VVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLG----PGSFG----A 644
LG G T + P G R G+ + ++ S A G PG G A
Sbjct: 947 LGIAGITGARGLAGPPGMPGPR--GSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLA 1004
Query: 645 GLGAQGPRSSTPEC---PVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGGLS 701
G + R P P +GS G E GSPG P PG PGPV
Sbjct: 1005 GTAGEPGRDGNPGSDGLPGRDGSPGGKGD--RGENGSPGAPGAPGHPG--PPGPVG---- 1056
Query: 702 VPTPCGRGA--GDFSEADLADRAFPV--RGAGPIAGRRRRRGWTFAAALRKGAPREQPPA 757
P G+ G+ A A P RGA G R +G T P
Sbjct: 1057 ---PAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPG 1113
Query: 758 SPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLC--VLQPFPARSRGL-- 813
+P A P + +P G V P P G SG + P P +RG
Sbjct: 1114 NPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERG 1173
Query: 814 --------GVPSQQGPTGSPG--CRDRASAPRAG 837
G P GP G+PG C +A AG
Sbjct: 1174 SEGSPGHPGQPGPPGPPGAPGPCCGGVGAAAIAG 1207
Score = 45.4 bits (106), Expect = 2e-04
Identities = 105/389 (26%), Positives = 125/389 (32%), Gaps = 85/389 (21%)
Query: 471 GRPGRVAGASGRRGASQARGGTGRAPARLRRGRGMPGRVGN-GVGEGRGASEPEGEPEPR 529
G PG+ AG SG G A G +G PA G PGR G G+ G P G P
Sbjct: 204 GEPGQ-AGPSGPPGPPGAIGPSG--PAGKDGESGRPGRPGERGLPGPPGIKGPAGIP--- 257
Query: 530 ARADLEVLQAGFERLQSLPELAERLGGRCPGQVAH-GVLARAGLLAAAARPGLAGSGVQR 588
GF PG H G R G PGL G
Sbjct: 258 ----------GF-----------------PGMKGHRGFDGRNGEKGETGAPGLKGENGLP 290
Query: 589 ALALAAAQLG--GWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLG-PGSFGAG 645
A +G G P L + GN R + T G PGS GA
Sbjct: 291 GENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAK 350
Query: 646 LGAQGPRSSTPECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTP 705
G GP S P NG+ +RG PG + G GP + G +P
Sbjct: 351 -GEVGPAGS----PGSNGAPG--------QRGEPGPQGHAGAQGPPGPPGING-----SP 392
Query: 706 CGRGAGDFSEADLADRAFPVRGAGPIAGRRRR---RGWTFAAALRKGAPREQPPASPAAS 762
G+G ++ P GA + G R G A LR GA P A
Sbjct: 393 GGKG-------EMGPAGIP--GAPGLMGARGPPGPAGANGAPGLRGGAGE---PGKNGAK 440
Query: 763 PCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGL--------- 813
PR E P + G P PG +GL P A RG
Sbjct: 441 GEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGL----PGAAGERGAPGFRGPAGP 496
Query: 814 -GVPSQQGPTGSPGCRDRASAPRAGAEAG 841
G+P ++GP G G A A E G
Sbjct: 497 NGIPGEKGPAGERGAPGPAGPRGAAGEPG 525
Score = 41.2 bits (95), Expect = 0.004
Identities = 68/242 (28%), Positives = 79/242 (32%), Gaps = 69/242 (28%)
Query: 639 PGSFGAGLGAQGPRSSTPEC-PVVNGSEWGLAAPLSP-----ERGSPGRPA---FLRSPG 689
PGS G+ G QGP + P G P P E G PGRP PG
Sbjct: 191 PGSPGSP-GYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPG 249
Query: 690 LCGPGPVPGGLSVPTPCGRGAGDFSEADLADRAFP-VRGAGPIAGRRRRRGWTFAAALR- 747
+ GP +PG FP ++G GR +G T A L+
Sbjct: 250 IKGPAGIPG------------------------FPGMKGHRGFDGRNGEKGETGAPGLKG 285
Query: 748 -KGAPREQPPASPAASPCQAPRAPEKETEAPRLRGRATAVA----------PRPLPAAPG 796
G P E P PR E P L G A A P P P PG
Sbjct: 286 ENGLPGENGAPGP-----MGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGP-PGPPG 339
Query: 797 FSGLCVLQPFPARSRGLGVPSQQGPTGSPGCRDRASAPRAGAEAGSMETFLRNGGLYPPP 856
+G FP G + GP GSPG AP E G + G PP
Sbjct: 340 TAG------FPGSP---GAKGEVGPAGSPGSN---GAPGQRGEPGPQ----GHAGAQGPP 383
Query: 857 SP 858
P
Sbjct: 384 GP 385
Score = 36.2 bits (82), Expect = 0.14
Identities = 52/193 (26%), Positives = 66/193 (34%), Gaps = 31/193 (16%)
Query: 677 GSPGRPAFLRSPGLCGPGPVPGGLSVP---TPCGRGAGDFS-EADLADRAFPVRGAGPIA 732
G PG P PG+ G PG P C G ++S + D D V G +A
Sbjct: 112 GPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGV-AVGGLA 170
Query: 733 GRRRRRG--------WTFAAALRKGAPREQ-PPASPAASPCQAPRAPE----------KE 773
G G T G+P Q PP P + P P K+
Sbjct: 171 GYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKD 230
Query: 774 TEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARS--RGL-GVPSQQGPTGSPGCRDR 830
E+ GR R LP PG G + FP RG G ++G TG+PG +
Sbjct: 231 GES----GRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGE 286
Query: 831 ASAPRAGAEAGSM 843
P G M
Sbjct: 287 NGLPGENGAPGPM 299
Score = 33.5 bits (75), Expect = 0.88
Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 21/118 (17%)
Query: 751 PREQPPASPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARS 810
P + P + C P+ P T P +G P+ P PG P R+
Sbjct: 75 PNPEIPFGECCAVC--PQPPTAPTRPPNGQGPQ---GPKGDPGPPGI---------PGRN 120
Query: 811 RGLGVPSQQGPTGSPG----CRDRASAPRAGA---EAGSMETFLRNGGLYPPPSPRAP 861
G+P Q G GSPG C + P+ + ++ +++ + GGL P P P
Sbjct: 121 GDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGP 178
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 57.8 bits (138), Expect = 4e-08
Identities = 117/436 (26%), Positives = 143/436 (32%), Gaps = 71/436 (16%)
Query: 478 GASGRRGASQARGGTGRAPARLRRGR-------GMPGRVGNGVGEGRGASEPEGEPEPRA 530
G G +G+ G GR ++ RG G+PG VG RG P G P P
Sbjct: 527 GEKGEKGSLGLPGPPGRDGSKGMRGEPGELGEPGLPGEVGM-----RGPQGPPGLPGPPG 581
Query: 531 RADLEVLQA--------------GFERLQSLPELAERLGGRCPGQVAHGVLARAGLLAAA 576
R LQ G + P + G P VA G G + A
Sbjct: 582 RVGAPGLQGERGEKGTRGEKGERGLDGFPGKPGDTGQQGRPGPSGVA-GPQGEKGDVGPA 640
Query: 577 ARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFG-SALLAALN 635
PG+ GS VQ+ G +P G+R R+ G L
Sbjct: 641 GPPGVPGSVVQQEGLKGEQGAPGPRGHQGAPG-PPGARGPIGPEGRDGPPGLQGLRGKKG 699
Query: 636 TLGPGSFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSPER----GSPGRPAFLRSPGLC 691
+GP LG QGP P P V G +P P G PG P PG
Sbjct: 700 DMGPPGIPGLLGLQGP----PGPPGVPGPPGPGGSPGLPGEIGFPGKPGPPGPTGPPGKD 755
Query: 692 GPGPVPGGLSVP-TPCGRGA----------GDFSEADLADRAFPVRGAG--------PIA 732
GP PG P RG G+ E LA R AG +
Sbjct: 756 GPNGPPGPPGTKGEPGERGEDGLPGKPGLRGEIGEQGLAGRPGEKGEAGLPGAPGFPGVR 815
Query: 733 GRRRRRGWTFAAALR--KGAPREQPPASPAASPCQAPRAPEKETEAPRLRGRATAVAPRP 790
G + +G L KG E+ A PA P P T PR+ G +
Sbjct: 816 GEKGDQGEKGELGLPGLKGDRGEKGEAGPAGPP-GLPGTTSLFTPHPRMPGEQGPKGEKG 874
Query: 791 LPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPGCRDRA---SAPRAGAEAGSMETFL 847
P PG GL R LG QGPTG PG + + AP A G+
Sbjct: 875 DPGLPGEPGL------QGRPGELG---PQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVG 925
Query: 848 RNGGLYPPPSPRAPAV 863
G PP S AP +
Sbjct: 926 APGPSGPPGSVGAPGL 941
Score = 55.5 bits (132), Expect = 2e-07
Identities = 113/468 (24%), Positives = 143/468 (30%), Gaps = 105/468 (22%)
Query: 445 GETTPLGEARGPCWKARGAVPSGRLRGRPGRVA--------GASGRRGASQARGGTGRAP 496
GE P GE P G L+GRPG + GA G+ GA A G G
Sbjct: 865 GEQGPKGEKGDP-----GLPGEPGLQGRPGELGPQGPTGPPGAKGQEGAHGAPGAAGNPG 919
Query: 497 ARLRRGR----GMPGRVG----------NGVGEGRGASEPEGEPEPRARADLEVLQAGFE 542
A G G PG VG +G +GA+ EG P P G
Sbjct: 920 APGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKGAAGEEGSPGP----------VGPR 969
Query: 543 RLQSLPELAERLGGRCPGQVAHGVLARAGLLAAAARPGLAGSGVQRALALAAAQLGGWTT 602
P L PG G GL + PG G+ A ++ G
Sbjct: 970 GDPGAPGL--------PGPPGKGKDGEPGLRGSPGLPGPLGTKA------ACGKVRGSEN 1015
Query: 603 CVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPGSFGAGLGAQGPRSSTPECPVVN 662
C + +G R A G + GP G+ G R P P
Sbjct: 1016 CALGGQCVKGDRGAPGIPGSPGSRGDPGIGVAGPPGPSGPPGDKGSPGSRG-LPGFPGPQ 1074
Query: 663 GSEWGLAAPLSP-ERGSPGRPAF--LRSPGL-----------CGPGP--------VPGGL 700
G AP +P ERG PG+P L SPG C PGP G
Sbjct: 1075 GPAGRDGAPGNPGERGPPGKPGLSSLLSPGDINLLAKDVCNDCPPGPPGLPGLPGFKGDK 1134
Query: 701 SVPTPCGRGAGDFSEADLADRAFP-------------VRGAGPIAGRRRRRGWTFAAALR 747
VP GR + + + P RGA G++ +G
Sbjct: 1135 GVPGKPGREGTEGKKGEAGPPGLPGPPGIAGPQGSQGERGADGEVGQKGDQGHPGVPGFM 1194
Query: 748 KGAPREQPPASP----AASPC--------QAPRAPEKETEAPRLRGRATAVAPRPLPAAP 795
PP + AA P + P P+ + P + G P P
Sbjct: 1195 GPPGNPGPPGADGIAGAAGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPP 1254
Query: 796 GFSGLCVLQPFPARSRGLGVPSQQGPTGSPGCRDRASAPRAGAEAGSM 843
G G P G P +G TG G AP E+G+M
Sbjct: 1255 GEPGKAGEPGLPGPEGARGPPGFKGHTGDSG------APGPRGESGAM 1296
Score = 43.9 bits (102), Expect = 7e-04
Identities = 108/417 (25%), Positives = 138/417 (33%), Gaps = 69/417 (16%)
Query: 456 PCWKARGAVPSGRLRGRPGRVAGASGRRGASQARGGTG----RAPARLRRGRGMPGRVGN 511
P +K VP G+PGR G G++G + G G P + RG G VG
Sbjct: 1128 PGFKGDKGVP-----GKPGR-EGTEGKKGEAGPPGLPGPPGIAGPQGSQGERGADGEVGQ 1181
Query: 512 GVGEGR----GASEPEGEPEPRARADLEVLQAGFERLQSLPELAERLGGRCPGQVAHGVL 567
+G G P G P P AD AG +Q P G + P + G+
Sbjct: 1182 KGDQGHPGVPGFMGPPGNPGPPG-ADGIAGAAGPPGIQGSPGKEGPPGPQGPSGLP-GIP 1239
Query: 568 ARAGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFG 627
G +PG G + L G P + + +G R E G
Sbjct: 1240 GEEGKEGRDGKPGPPGEPGKAG----EPGLPGPEGARGPPGFKGHTGDSGAPGPRG-ESG 1294
Query: 628 SALLAALNTLGPGSFG-----AGLGAQGPRSSTPECPVVNGSEWGLAAP----------L 672
+ L L PG G G QGPR P NGS P
Sbjct: 1295 AMGLPGQEGL-PGKDGDTGPTGPQGPQGPRGP----PGKNGSPGSPGEPGPSGTPGQKGS 1349
Query: 673 SPERGSPGRPAFLRS---PGLCGPGPVPGGLSVPTPCGRGA--GDFSEADLADRAFPVRG 727
E GSPG P FL PG G VPG VP G G+ + + P G
Sbjct: 1350 KGENGSPGLPGFLGPRGPPGEPGEKGVPGKEGVPGKPGEPGFKGERGDPGIKGDKGPPGG 1409
Query: 728 AGP-----IAGRRRRRGWTFAAALRKGAPREQPPASPAASPCQAPRAPEKETEAPRL--- 779
G I G + G +G P E P P P Q P P E+P +
Sbjct: 1410 KGQPGDPGIPGHKGHTGLMGP----QGLPGENGPVGPPGPPGQ-PGFPGLRGESPSMETL 1464
Query: 780 ---------RGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGL-GVPSQQGPTGSPG 826
+ T +A P + +P P G G+P + GP G PG
Sbjct: 1465 RRLIQEELGKQLETRLAYLLAQMPPAYMKSSQGRPGPPGPPGKDGLPGRAGPMGEPG 1521
Score = 42.7 bits (99), Expect = 0.001
Identities = 123/504 (24%), Positives = 162/504 (32%), Gaps = 116/504 (23%)
Query: 428 GLAGGIEAAVLLRGARAGETTPLGEARGPCWKARGAVP----SGRLRGRPG-RVAGASGR 482
GL G + R E LG G C K P S RG PG VAG G
Sbjct: 996 GLPGPLGTKAACGKVRGSENCALG---GQCVKGDRGAPGIPGSPGSRGDPGIGVAGPPGP 1052
Query: 483 RGASQARGGTGRAPARLRRGRGMPGRVGNGVGEGR-GASEPEGEPEPRARADLEVLQAGF 541
G +G G RG+PG G GR GA GE P + L L +
Sbjct: 1053 SGPPGDKGSPG--------SRGLPGFPGPQGPAGRDGAPGNPGERGPPGKPGLSSLLSPG 1104
Query: 542 ERLQSLPELAERLGGRCPGQVAH--GVLARAGLLAAAARPGLAGSGVQRALALAAAQLGG 599
+ + LA+ + CP G+ G +PG G+ ++ A G
Sbjct: 1105 D----INLLAKDVCNDCPPGPPGLPGLPGFKGDKGVPGKPGREGTEGKKGEAGPPGLPG- 1159
Query: 600 WTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAAL-----NTLGPGSFG-AGL------- 646
+ P +G R A ++ + G + N PG+ G AG
Sbjct: 1160 -PPGIAGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGIAGAAGPPGIQ 1218
Query: 647 ---------GAQGPRSSTPECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGP---- 693
G QGP S P P G E P G PG P PGL GP
Sbjct: 1219 GSPGKEGPPGPQGP-SGLPGIPGEEGKEGRDGKP-----GPPGEPGKAGEPGLPGPEGAR 1272
Query: 694 GPV-----PGGLSVPTPCGRGA--GDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAAL 746
GP G P P G G + L + GP G + RG
Sbjct: 1273 GPPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPTGP-QGPQGPRG----PPG 1327
Query: 747 RKGAPREQPPASPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPF 806
+ G+P P+ +P Q + + E +P L G + PR P PG G+ +
Sbjct: 1328 KNGSPGSPGEPGPSGTPGQ--KGSKGENGSPGLPG---FLGPRGPPGEPGEKGVPGKEGV 1382
Query: 807 PAR--------SRG----------------------------------LGVPSQQGPTGS 824
P + RG G+P + GP G
Sbjct: 1383 PGKPGEPGFKGERGDPGIKGDKGPPGGKGQPGDPGIPGHKGHTGLMGPQGLPGENGPVGP 1442
Query: 825 PGCRDRASAPRAGAEAGSMETFLR 848
PG + P E+ SMET R
Sbjct: 1443 PGPPGQPGFPGLRGESPSMETLRR 1466
Score = 30.4 bits (67), Expect = 7.4
Identities = 44/174 (25%), Positives = 59/174 (33%), Gaps = 27/174 (15%)
Query: 658 CPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGR----GAGDF 713
CP E G+A P+ G PG + G GP PG P G G G F
Sbjct: 478 CPAGEKGEMGVAGPM----GLPGPKGDI---GAIGPVGAPG------PKGEKGDVGIGPF 524
Query: 714 SEADLADRAFPVRGAGPIAGRRRRRGWTFAAALRKGAPREQ-PPASPAASPCQAPRAPEK 772
+ + ++ + GP GR +G +G P E P P + P+ P
Sbjct: 525 GQGEKGEKG-SLGLPGP-PGRDGSKGM-------RGEPGELGEPGLPGEVGMRGPQGPPG 575
Query: 773 ETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPG 826
P G R G G L FP + G + GP+G G
Sbjct: 576 LPGPPGRVGAPGLQGERGEKGTRGEKGERGLDGFPGKPGDTGQQGRPGPSGVAG 629
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 57.4 bits (137), Expect = 6e-08
Identities = 104/396 (26%), Positives = 128/396 (32%), Gaps = 62/396 (15%)
Query: 469 LRGRPGRVA--GASGRRGASQARGGTGRAPARLRRGRGMPGRVGN-GVGEGRGASEPEGE 525
L GRPG V G G +G A G G P L+ G PGRVG G GA G+
Sbjct: 486 LTGRPGPVGLPGHPGLKGEEGAEGPQG--PRGLQGPHGPPGRVGKMGRPGADGARGLPGD 543
Query: 526 PEPRARADLEVLQAGFERLQSLP-------------------ELAERLGGRCPGQVAH-G 565
P+ GF+ L LP E ER PG G
Sbjct: 544 TGPKG-------DRGFDGLPGLPGEKGQRGDFGHVGQPGPPGEDGERGAEGPPGPTGQAG 596
Query: 566 VLARAGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIE 625
GLL PG G + A G V P + GNH
Sbjct: 597 EPGPRGLLGPRGSPGPTGRPGVTGIDGAPGAKGN----VGPPGEPGPPGQQGNH------ 646
Query: 626 FGSALLAALNTLGPGSFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSPERGSPGRPAFL 685
GS L GP G +GP + P P + GS+ L P G G
Sbjct: 647 -GSQGLP-----GPQGLIGTPGEKGPPGN-PGIPGLPGSDGPLGHP--GHEGPTGEKGAQ 697
Query: 686 RSPGLCGPGPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAA 745
PG GP PG V G + + + FP G G + +G
Sbjct: 698 GPPGSAGPPGYPGPRGVKGTSGNRGLQGEKGEKGEDGFP--GFKGDVGLKGDQG------ 749
Query: 746 LRKGAPREQPPASPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQP 805
+ GAP + P QA +A E+ P G + LP PG G
Sbjct: 750 -KPGAPGPRGEDGPEGPKGQAGQAGEEGP--PGSAGEKGKLGVPGLPGYPGRPGPKGSIG 806
Query: 806 FPARSRGLGVPSQQGPTGSPGCRDRASAPRAGAEAG 841
FP +G + G TG PG P + E G
Sbjct: 807 FPGPLGPIGEKGKSGKTGQPGLEGERGPPGSRGERG 842
Score = 43.5 bits (101), Expect = 8e-04
Identities = 96/399 (24%), Positives = 124/399 (31%), Gaps = 71/399 (17%)
Query: 470 RGRPGRVAGASGRRGASQARGGTGR-APARLRRGRGMPGRVGNGVGEGRGASEPEGEPEP 528
+G+ GR G G+RG +G TG PA + +G G VG +GE RG P G P
Sbjct: 889 QGKDGR-PGHPGQRGELGFQGQTGPPGPAGVLGPQGKTGEVGP-LGE-RGPPGPPGPPGE 945
Query: 529 RARADLEVLQAGFERLQSLPELAERLGGRCPGQVAHGVLARAGLLAAAARPGLAGSGVQR 588
Q LP L R G A G L G L GL G
Sbjct: 946 ----------------QGLPGLEGREG-------AKGELGPPGPLGKEGPAGLRGF---- 978
Query: 589 ALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPGSFGAGLGA 648
P + G G + L GP G
Sbjct: 979 ------------------PGPKGGPGDPGP---------TGLKGDKGPPGPVGANGSPGE 1011
Query: 649 QGPRSSTPECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGR 708
+GP P + + G P+ P G G PG G +PG L P G
Sbjct: 1012 RGPLG--PAGGIGLPGQSGSEGPVGPA-GKKGSRGERGPPGPTGKDGIPGPLGPLGPPGA 1068
Query: 709 GAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALRKGAPREQPPASPAASPCQAPR 768
E D D P G G + G +R A PP + A + P
Sbjct: 1069 AGPSGEEGDKGDVGAP--GHKGSKGDKGDAGPPGQPGIRGPAGHPGPPGADGAQGRRGPP 1126
Query: 769 APEKETEAPRLRGRATAVAP---RPLPAAPGFSGLCVLQPFPARSRGL-GVPSQQGPTGS 824
+ +RG + P + LP PG G + S G G P +GP G
Sbjct: 1127 GLFGQKGDDGVRGFVGVIGPPGLQGLPGPPGEKG----EVGDVGSMGPHGAPGPRGPQGP 1182
Query: 825 PGCRDRASAPRAGAEAGSMETFLRNGGLYPPPSPRAPAV 863
G P + G++ G P P AP +
Sbjct: 1183 TGSEGTPGLPGGVGQPGAVGEKGERGDAGDPGPPGAPGI 1221
Score = 41.6 bits (96), Expect = 0.003
Identities = 111/454 (24%), Positives = 149/454 (32%), Gaps = 82/454 (18%)
Query: 435 AAVLLRGARAGETTPLGEARGPCWKARGAVPSGR--LRGRPGRVA-----------GASG 481
A VL + GE PLGE RGP G L GR G G +G
Sbjct: 916 AGVLGPQGKTGEVGPLGE-RGPPGPPGPPGEQGLPGLEGREGAKGELGPPGPLGKEGPAG 974
Query: 482 RRGASQARGGTGR-APARLRRGRGMPGRVG--------------NGVG-EGRGASEPEGE 525
RG +GG G P L+ +G PG VG G+G G+ SE
Sbjct: 975 LRGFPGPKGGPGDPGPTGLKGDKGPPGPVGANGSPGERGPLGPAGGIGLPGQSGSEGPVG 1034
Query: 526 PEPRARADLEVLQAGFERLQSLPELAERLGGRCPGQVAHGVLARAGLLAAAARPGLAGSG 585
P + + E G +P LG PG A G G PG GS
Sbjct: 1035 PAGKKGSRGERGPPGPTGKDGIPGPLGPLGP--PG--AAGPSGEEGDKGDVGAPGHKGSK 1090
Query: 586 VQRALALAAAQLG--GWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPGSFG 643
+ A Q G G P R G + + + + +GP
Sbjct: 1091 GDKGDAGPPGQPGIRGPAGHPGPPGADGAQGRRGPPGLFGQKGDDGVRGFVGVIGPPGLQ 1150
Query: 644 AGLGAQGPRSSTPECPVVNGSEWGLAAPLSPE-----RGSPGRPAFLRSPGLCG------ 692
G G + + V + G P P+ G+PG P + PG G
Sbjct: 1151 GLPGPPGEKGEVGD--VGSMGPHGAPGPRGPQGPTGSEGTPGLPGGVGQPGAVGEKGERG 1208
Query: 693 ----PGPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALRK 748
PGP PG +P P G G+ ++ + A P GP G +G +
Sbjct: 1209 DAGDPGP-PGAPGIPGPKG-DIGEKGDSGPSGAAGPPGKKGP-PGEDGAKG----SVGPT 1261
Query: 749 GAPREQ-PPASPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFP 807
G P + PP P S +P ++ + + G P PG SG
Sbjct: 1262 GLPGDLGPPGDPGVSGIDG--SPGEKGDPGDVGG----------PGPPGASG-------- 1301
Query: 808 ARSRGLGVPSQQGPTGSPGCRDRASAPRAGAEAG 841
G P ++GP+G G R A E G
Sbjct: 1302 -EPGAPGPPGKRGPSGHMGREGREGEKGAKGEPG 1334
Score = 41.6 bits (96), Expect = 0.003
Identities = 110/423 (26%), Positives = 141/423 (33%), Gaps = 65/423 (15%)
Query: 427 VGLAGGIEAAVLLRGARAGETTPLGEAR-----------GPCWKARGAVPSGRLRGRPGR 475
+G AGGI ++G P+G A GP K P G L G PG
Sbjct: 1015 LGPAGGIGLP-----GQSGSEGPVGPAGKKGSRGERGPPGPTGKDGIPGPLGPL-GPPG- 1067
Query: 476 VAGASGRRGASQARGGTGRAPARLRRG-RGMPGRVGNGVGEGRGASEPEGEPEPRARADL 534
AG SG G G G ++ +G G PG+ G RG P G P P AD
Sbjct: 1068 AAGPSGEEGDKGDVGAPGHKGSKGDKGDAGPPGQPGI-----RG---PAGHPGPPG-AD- 1117
Query: 535 EVLQAGFERLQSLPELAERLGGRCPGQVAHGVLARAGLLAAAARPGLAGSGVQRALALAA 594
G + + P L + G GV G++ GL G ++
Sbjct: 1118 -----GAQGRRGPPGLFGQKGD-------DGVRGFVGVIGPPGLQGLPGPPGEKGEVGDV 1165
Query: 595 AQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLG-------PGSFGAGLG 647
+G +P R G+ + G A+ G PG GA G
Sbjct: 1166 GSMGPHG----APGPRGPQGPTGSEGTPGLPGGVGQPGAVGEKGERGDAGDPGPPGAP-G 1220
Query: 648 AQGPRSSTPECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCG 707
GP+ E S G A P ++G PG + G GP +PG L P G
Sbjct: 1221 IPGPKGDIGEKGDSGPS--GAAGPPG-KKGPPGEDG---AKGSVGPTGLPGDLGPPGDPG 1274
Query: 708 RGAGDFSEADLADRAFPVRGAGP--IAGRRRRRGWTFAAALRKGAPREQPPASPAASPCQ 765
D S + D V G GP +G G RE A
Sbjct: 1275 VSGIDGSPGEKGDPG-DVGGPGPPGASGEPGAPGPPGKRGPSGHMGREGREGEKGAKGEP 1333
Query: 766 APRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSP 825
P P T RG V P L PG G L P + +G P GP+G P
Sbjct: 1334 GPDGPPGRTGPMGARGPPGRVGPEGLRGIPGPVGEPGLLGAPGQ---MGPPGPLGPSGLP 1390
Query: 826 GCR 828
G +
Sbjct: 1391 GLK 1393
Score = 40.8 bits (94), Expect = 0.006
Identities = 59/212 (27%), Positives = 71/212 (33%), Gaps = 45/212 (21%)
Query: 639 PGSFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSPE-----RGSPGRPAFLRSPGLCGP 693
PG G G GP P P + G E G P P G PGR + PG G
Sbjct: 481 PGPVGL-TGRPGP-VGLPGHPGLKGEE-GAEGPQGPRGLQGPHGPPGRVGKMGRPGADGA 537
Query: 694 GPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALRKGAPRE 753
+PG P G DR F G + G + +RG F + G P E
Sbjct: 538 RGLPGDTG---PKG------------DRGFD--GLPGLPGEKGQRG-DFGHVGQPGPPGE 579
Query: 754 Q-------PPA------SPAASPCQAPRAPEKETEAPRLRGRATA------VAPRPLPAA 794
PP P PR T P + G A V P P
Sbjct: 580 DGERGAEGPPGPTGQAGEPGPRGLLGPRGSPGPTGRPGVTGIDGAPGAKGNVGPPGEPGP 639
Query: 795 PGFSGLCVLQPFPARSRGLGVPSQQGPTGSPG 826
PG G Q P +G P ++GP G+PG
Sbjct: 640 PGQQGNHGSQGLPGPQGLIGTPGEKGPPGNPG 671
Score = 40.8 bits (94), Expect = 0.006
Identities = 95/400 (23%), Positives = 119/400 (29%), Gaps = 73/400 (18%)
Query: 471 GRPGRVAGASGRRGASQARGGTGRAPARLRRGRGMPGRVGN-GVGEGRGASEPEGEPEPR 529
G PG G +G +GA G G P RG+ G GN G+ +G +G P +
Sbjct: 683 GHPGH-EGPTGEKGAQGPPGSAG--PPGYPGPRGVKGTSGNRGLQGEKGEKGEDGFPGFK 739
Query: 530 ARADLEVLQ----AGFERLQSLPELAERLGGRCPGQVAHGVLARAGLLAAAARPGLAGSG 585
L+ Q A R + PE + G+ + G G L PG G
Sbjct: 740 GDVGLKGDQGKPGAPGPRGEDGPEGPKGQAGQAGEEGPPGSAGEKGKLGVPGLPGYPGRP 799
Query: 586 VQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPGSFG-- 643
+ LG P +G E E G PGS G
Sbjct: 800 GPKGSIGFPGPLG--------PIGEKGKSGKTGQPGLEGERGP----------PGSRGER 841
Query: 644 ---AGLGAQGPRSSTPECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGGL 700
G GP+ + G+PG P PGL GP PG
Sbjct: 842 GQPGATGQPGPKGDVGQ------------------DGAPGIPGEKGLPGLQGPPGFPGPK 883
Query: 701 SVPTPCGRGA-----GDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALRKGAPREQP 755
P G+ G E + P AG + + G E
Sbjct: 884 GPPGHQGKDGRPGHPGQRGELGFQGQTGPPGPAGVLGPQ--------------GKTGEVG 929
Query: 756 PASPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGV 815
P P P P E P L GR A P G G L+ FP G G
Sbjct: 930 PLGERGPP--GPPGPPGEQGLPGLEGREGAKGELGPPGPLGKEGPAGLRGFPGPKGGPGD 987
Query: 816 PSQQGPTGSPGCRDRASAPRAGAEAGSMETFLRNGGLYPP 855
P GPTG G + A G GG+ P
Sbjct: 988 P---GPTGLKGDKGPPGPVGANGSPGERGPLGPAGGIGLP 1024
Score = 33.1 bits (74), Expect = 1.1
Identities = 52/196 (26%), Positives = 62/196 (31%), Gaps = 37/196 (18%)
Query: 677 GSPGRPAFLRSPGLCGPGPVPG-----------GLSVPTPCGRGAGDF-----------S 714
G PG P F PG GP +PG G + P G F +
Sbjct: 407 GPPGPPGFPGDPGPPGPAGLPGIPGIDGIRGPPGTVIMMPFQFAGGSFKGPPVSFQQAQA 466
Query: 715 EADLADRAFPVRG-AGPI--AGRRRRRGWTFAAALRKGAPREQPPASPAASPCQAPRAPE 771
+A L ++G GP+ GR G L KG + P P Q P P
Sbjct: 467 QAVLQQTQLSMKGPPGPVGLTGRPGPVGLPGHPGL-KGEEGAEGPQGPRG--LQGPHGPP 523
Query: 772 KETEAPRLRGRATAVAPRPLPAAP------GFSGLCVLQPFPARSRGLGVPSQQGPTGSP 825
GR A R LP GF GL L + G Q GP G
Sbjct: 524 GRVGK---MGRPGADGARGLPGDTGPKGDRGFDGLPGLPGEKGQRGDFGHVGQPGPPGED 580
Query: 826 GCRDRASAPRAGAEAG 841
G R P +AG
Sbjct: 581 GERGAEGPPGPTGQAG 596
Score = 30.4 bits (67), Expect = 7.4
Identities = 28/98 (28%), Positives = 33/98 (33%), Gaps = 28/98 (28%)
Query: 730 PIAGRRRRRGWTFAAALRKGAPREQPPASPAASPCQAPRAPEKETEAPRLRGRATAVAPR 789
P AG + +G A + KG E PP +P P P
Sbjct: 370 PGAGEKGAKGEP--AVIEKGQQFEGPPGAPGPQGVVGPSGP------------------- 408
Query: 790 PLPAAPGFSGLCVLQPFPARSRGL-GVPSQQGPTGSPG 826
P PGF G P P GL G+P G G PG
Sbjct: 409 --PGPPGFPG----DPGPPGPAGLPGIPGIDGIRGPPG 440
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 56.6 bits (135), Expect = 1e-07
Identities = 124/463 (26%), Positives = 147/463 (31%), Gaps = 119/463 (25%)
Query: 430 AGGIEAAVLLRGARAGETTPLGEARGPCWKARGAVPSGR-------LRGRPGRV------ 476
A GI A GAR G + P G P K P +G PG V
Sbjct: 402 APGIAGAPGFPGAR-GPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPP 460
Query: 477 --AGASGRRGASQARGGTGRAPARLRRG----RGMPGRVGNGVGEGRGASEPEGEPEPRA 530
AG G+RGA G TG RG RG PG +GV +G + G P P A
Sbjct: 461 GPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPG--ADGVAGPKGPAGERGSPGP-A 517
Query: 531 RADLEVLQAGFERLQSLPELAERLGGRCPGQVAHGVLARAGLLAAAARPGLAGSGVQRAL 590
+AG LP A+ L G G G RPG G R
Sbjct: 518 GPKGSPGEAGRPGEAGLPG-AKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGAR-- 574
Query: 591 ALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPGSFGAGLGAQG 650
G + P + + G R + +GP GAQG
Sbjct: 575 --------GQAGVMGFPGPKGAAGEPGKAGERGVP------GPPGAVGPAGKDGEAGAQG 620
Query: 651 PRSSTPECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGP---------VPGGLS 701
P P E G E+G G P F PG GP VPG L
Sbjct: 621 PPG-----PAGPAGERG-------EQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLG 668
Query: 702 VPTPCG-RGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALRKGAPREQPPASPA 760
P P G RG +R FP G R +G PP
Sbjct: 669 APGPSGARG----------ERGFP--------GERGVQG---------------PPG--- 692
Query: 761 ASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQG 820
P P AP G A P APG G LQ G+P ++G
Sbjct: 693 ------PAGPRGANGAP---GNDGAKGDAGAPGAPGSQGAPGLQ---------GMPGERG 734
Query: 821 PTGSPGCR-DRASAPRAGAEAGSMETFLRNGGLYPPPSPRAPA 862
G PG + DR A GA+ + +R GL P P PA
Sbjct: 735 AAGLPGPKGDRGDAGPKGADGSPGKDGVR--GLTGPIGPPGPA 775
Score = 56.2 bits (134), Expect = 1e-07
Identities = 118/447 (26%), Positives = 142/447 (31%), Gaps = 109/447 (24%)
Query: 471 GRPGRVAGASGRRGASQARGGTGRAPARLRRGRGMPGRVGN----GVGEGRGASEPEGEP 526
G+PGR G G G ARG G A G+PG G+ G+ +G + P G P
Sbjct: 236 GKPGR-PGERGPPGPQGARGLPGTA--------GLPGMKGHRGFSGLDGAKGDAGPAG-P 285
Query: 527 EPRARADLEVLQAGFERLQSLPELAERLGGRCPGQVAHGVLARAGLLAAAARPGLAGSGV 586
+ + E G + LP R G P G G AA PG G
Sbjct: 286 KGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPA----GARGNDGATGAAGPPGPTGPAG 341
Query: 587 QRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLG-------P 639
A G P RGS G VR A G P
Sbjct: 342 PPGFPGAVGAKGE-----AGPQGPRGSE--GPQGVRGEPGPPGPAGAAGPAGNPGADGQP 394
Query: 640 GSFGAGLGAQGPRSSTPECPVVNGSEW--GLAAPLSPE--RGSPGRPAFLRSPGLCG-PG 694
G+ GA GA G + P P G G P P+ G PG P G G PG
Sbjct: 395 GAKGAN-GAPGI-AGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPG 452
Query: 695 PV--------------------PGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGR 734
PV PG +P P G G S R FP GA +AG
Sbjct: 453 PVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGS------RGFP--GADGVAGP 504
Query: 735 RRRRGWTFAAALRKGAPREQPPASPAASPCQAPR-------------------APEKETE 775
+ G +G+P PA P SP +A R P+ +T
Sbjct: 505 KGPAG-------ERGSPG---PAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTG 554
Query: 776 APRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPGCRDRASAPR 835
P G+ P P PG G + FP G P + G G PG
Sbjct: 555 PPGPAGQDGRPGP---PGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAG 611
Query: 836 AGAEAGSMETFLRNGGLYPPPSPRAPA 862
EAG+ PP P PA
Sbjct: 612 KDGEAGAQ----------GPPGPAGPA 628
Score = 51.2 bits (121), Expect = 4e-06
Identities = 74/251 (29%), Positives = 85/251 (33%), Gaps = 54/251 (21%)
Query: 647 GAQGPRSSTPECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPC 706
G +GP+ T G P P G PGR PGL GP PG P
Sbjct: 109 GVEGPKGDT-----------GPRGPRGPA-GPPGRDGIPGQPGLPGPPGPPGPPGPPGLG 156
Query: 707 GRGAGDFSEADLADRAFPVRGAGPI--AGRRRRRGWTFAAALR--KGAPREQPPASPAAS 762
G A S + GP+ +G R G A + +G P E P P AS
Sbjct: 157 GNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGE--PGEPGAS 214
Query: 763 PCQAPRAPE-------KETEA-----PRLRGRATAVAPRPLPAAPGFSGLCVLQPF---- 806
PR P + EA P RG R LP G G+ + F
Sbjct: 215 GPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLD 274
Query: 807 -------PARSRGL-------GVPSQQGPTGSPGCRDRASAP-RAGAEAGSMETFLRNGG 851
PA +G G P Q GP G PG R R AP AGA T G
Sbjct: 275 GAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGAT-----G 329
Query: 852 LYPPPSPRAPA 862
PP P PA
Sbjct: 330 AAGPPGPTGPA 340
Score = 51.2 bits (121), Expect = 4e-06
Identities = 137/489 (28%), Positives = 157/489 (32%), Gaps = 96/489 (19%)
Query: 426 AVGLAGGIEAAVLLRGARAGETTPLGEARGPCWKARGAVPSGR--LRGRPGRV-----AG 478
AVG AG + AG P G A GP + P+G +G PG AG
Sbjct: 606 AVGPAG--------KDGEAGAQGPPGPA-GPAGERGEQGPAGSPGFQGLPGPAGPPGEAG 656
Query: 479 ASGRRGASQARGGTGRAPARLRRG-------RGMPGRVG----NGVGEGRGASEPEGEPE 527
G +G G G + AR RG +G PG G NG GA G P
Sbjct: 657 KPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPG 716
Query: 528 PRARADLEVLQAGFERLQSLPELAERLGGRCPGQVAHGVLARAGLLAAAARPGLAG---- 583
G LQ +P ER PG G AG A PG G
Sbjct: 717 APG-------SQGAPGLQGMP--GERGAAGLPGP--KGDRGDAGPKGADGSPGKDGVRGL 765
Query: 584 SGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLG----- 638
+G A A + P G+R A R G A A
Sbjct: 766 TGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGA 825
Query: 639 ---PGSFGAGLGAQGPRSSTPECPVVNGSEWGLAAP-LSPERGSPGRPAFLRSPGLCG-- 692
PG GA A P + P P G + AP RGS G P PG G
Sbjct: 826 KGEPGDAGAKGDAGPPGPAGPAGPP--GPIGNVGAPGAKGARGSAGPPGATGFPGAAGRV 883
Query: 693 --PGPV--PGGLSVPTPCGR--GAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAAL 746
PGP G P P G+ G G E A R V GP A
Sbjct: 884 GPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPG-----------PAG 932
Query: 747 RKGAPREQPPASPAASPCQAPRAPEKETEA-PRLRGRATAVAPRPLPAAPGFSGLCVLQP 805
KG+P PA +P A ++ P RG R P PG SG Q
Sbjct: 933 EKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGE------RGFPGLPGPSGEPGKQG 986
Query: 806 FPARSRGLGVPSQQGP---TGSPGCRDRASAPRA----------GAEAGSMETFLRNGGL 852
S G P GP G PG R AP A GA+ ET G
Sbjct: 987 PSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGET----GPA 1042
Query: 853 YPPPSPRAP 861
PP +P AP
Sbjct: 1043 GPPGAPGAP 1051
Score = 50.1 bits (118), Expect = 9e-06
Identities = 121/440 (27%), Positives = 142/440 (32%), Gaps = 88/440 (20%)
Query: 455 GPCWKARGAVPSGRLRGRPGRVA--GASGRRGASQARGGTGRAPARLRRGR----GMPGR 508
GP K P+G+ GRPG GA G+ G G G A + G G PG
Sbjct: 548 GPDGKTGPPGPAGQ-DGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGA 606
Query: 509 VGNGVGEGR-GASEPEGEPEPRARADLEVLQAGFERLQSLPELAERLG--GRCPGQVAHG 565
VG +G GA P G P E AG Q LP A G G+ Q G
Sbjct: 607 VGPAGKDGEAGAQGPPGPAGPAGERG-EQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPG 665
Query: 566 VLARAGLLAAAARPGLAGS-GVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREI 624
L G A G G GVQ P G R A +
Sbjct: 666 DLGAPGPSGARGERGFPGERGVQ------------------GPPGPAGPRGANGAPGNDG 707
Query: 625 EFGSALLAALNTLGPGSFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSPERGSPGRPAF 684
G A PGS GA G QG P G+ GL P +RG G
Sbjct: 708 AKGDAGAPG----APGSQGAP-GLQG-------MPGERGAA-GLPGPKG-DRGDAGPKGA 753
Query: 685 LRSPGLCGPGPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAA 744
SPG G + G + P P G GD E+ + A P GA G R G A
Sbjct: 754 DGSPGKDGVRGLTGPIGPPGPAG-APGDKGESGPSGPAGPT-GARGAPGDRGEPGPPGPA 811
Query: 745 ALR-----------KGAPREQPPASPAASPCQA----PRAPEKETEAPRLRGRATAVAPR 789
KG P + A P A P P AP +G + P
Sbjct: 812 GFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGP- 870
Query: 790 PLPAAPGFSGLC--VLQPFPARSRG----------------------LGVPSQQGPTGSP 825
P A GF G V P P+ + G G P + GP G P
Sbjct: 871 --PGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPP 928
Query: 826 GCRDRASAPRAGAEAGSMET 845
G +P A AG+ T
Sbjct: 929 GPAGEKGSPGADGPAGAPGT 948
Score = 47.8 bits (112), Expect = 5e-05
Identities = 132/470 (28%), Positives = 155/470 (32%), Gaps = 64/470 (13%)
Query: 430 AGGIEAAVLLRGARAGETTPLGEARGPCWK--ARGAVPSGRLRGRPGRV-----AGASGR 482
A G++ RGA AG P G+ RG A G+ +RG G + AGA G
Sbjct: 723 APGLQGMPGERGA-AGLPGPKGD-RGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGD 780
Query: 483 RGASQARGGTGRAPARLRRG-RGMPGRVGNGVGEGRGASEPEGEPEPRARADLEVLQAGF 541
+G S G G AR G RG PG G A P + +P A+ E AG
Sbjct: 781 KGESGPSGPAGPTGARGAPGDRGEPGPPG----PAGFAGPPGADGQPGAKG--EPGDAGA 834
Query: 542 ERLQSLPELAERLGGRCP-GQV----AHGVLARAGLLAAAARPGLAGSGVQRALALAAAQ 596
+ P A G P G V A G AG A PG AG + A
Sbjct: 835 KGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGP 894
Query: 597 LGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPGSFGAGLGAQGPRSS-- 654
G +G R R E G GP GA GP +
Sbjct: 895 PG--PPGPAGKEGGKGPRGETGPAGRPGEVGPP-----GPPGPAGEKGSPGADGPAGAPG 947
Query: 655 TPECPVVNGSEWGLAAP-LSPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCG----RG 709
TP + G + P ERG PG P PG GP G P P G G
Sbjct: 948 TPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAG 1007
Query: 710 AGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAAL--RKGAPREQPPASPAASPCQ-- 765
S + A A G G + RG T A GAP P PA
Sbjct: 1008 PPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRG 1067
Query: 766 --APRAPEKETEAPRLRGRATAVAP------------RPLPAAPGFSGLCVLQPFPARSR 811
P P RG A P R + GFSGL P P
Sbjct: 1068 ETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGL-QGPPGPP--- 1123
Query: 812 GLGVPSQQGPTGSPGCRDRASAPRAGAEAGSMETFLRNG--GLYPPPSPR 859
G P +QGP+G+ G P AG+ NG G PP PR
Sbjct: 1124 --GSPGEQGPSGASGPAGPRGPP---GSAGAPGKDGLNGLPGPIGPPGPR 1168
Score = 41.6 bits (96), Expect = 0.003
Identities = 62/205 (30%), Positives = 72/205 (35%), Gaps = 32/205 (15%)
Query: 639 PGSFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPG 698
PG GA G GPR P P NG + E G PGRP PG G +PG
Sbjct: 208 PGEPGAS-GPMGPRGP-PGPPGKNGDDG--------EAGKPGRPGERGPPGPQGARGLPG 257
Query: 699 GLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALRKGAPREQPPAS 758
+P +G FS D A AGP AG + G + GAP +
Sbjct: 258 TAGLPGM--KGHRGFSGLDGAKG-----DAGP-AGPKGEPG----SPGENGAPGQM---G 302
Query: 759 PAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAP-GFSGLCVLQPFPARSRGLGVPS 817
P P + R R AT A P P P G G FP G
Sbjct: 303 PRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPG------FPGAVGAKGEAG 356
Query: 818 QQGPTGSPGCRDRASAPRAGAEAGS 842
QGP GS G + P AG+
Sbjct: 357 PQGPRGSEGPQGVRGEPGPPGPAGA 381
Score = 31.2 bits (69), Expect = 4.4
Identities = 30/90 (33%), Positives = 35/90 (38%), Gaps = 9/90 (10%)
Query: 35 AAQAGGEGGRAQPGLPCSVDLATGLEGPLGGPAVDLDVGFSPGDDIAGQSLGAAGGQVVH 94
A + G G R +PG TGL GP G GF D +AG G AG +
Sbjct: 463 AGEEGKRGARGEPG-------PTGLPGPPGERGGPGSRGFPGADGVAGPK-GPAGERGSP 514
Query: 95 LPGGQLAVPDVEVGQLTHKCLGGIKPTTQS 124
P G P E G+ L G K T S
Sbjct: 515 GPAGPKGSPG-EAGRPGEAGLPGAKGLTGS 543
>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
sapiens]
Length = 1691
Score = 56.2 bits (134), Expect = 1e-07
Identities = 96/372 (25%), Positives = 132/372 (35%), Gaps = 64/372 (17%)
Query: 469 LRGRPGRVAGASGRRGASQARGGTGRAPARLRRGRGMPGRVG--NGVGEGRGASEPEGEP 526
+RG PG + G+SG G G +G +R G+PG G G+ E G P
Sbjct: 1025 IRGLPG-LKGSSGITGFPGMPGESGSQG--IRGSPGLPGASGLPGLKGDNGQTVEISGSP 1081
Query: 527 EPRARADLEVLQAGFERLQSLPELAERLGGRCPGQVAH----GVLARAGLLAAAARPGLA 582
P+ + ++GF+ + L +G PG GV GL A PG+A
Sbjct: 1082 GPKGQPG----ESGFKGTKGRDGLIGNIG--FPGNKGEDGKVGVSGDVGLPGAPGFPGVA 1135
Query: 583 GSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPGSF 642
G + L ++ G + SP L G + + T GP
Sbjct: 1136 GMRGEPGLPGSSGHQGAIGP-LGSPGLIGPKGFPGFPGLHGLNGLPGTKGTHGTPGPSIT 1194
Query: 643 GAG--LGAQGPRSSTPECPVVNGSEWGLAAPLSPE-RGSPGRPAFLRSPGLCGPGPVPG- 698
G G GP+ + G+ AP P RG G F PGL GP +PG
Sbjct: 1195 GVPGPAGLPGPKGEKGYPGI------GIGAPGKPGLRGQKGDRGF---PGLQGPAGLPGA 1245
Query: 699 -GLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALRKGAPREQPPA 757
G+S+P+ GD G + G R R G PA
Sbjct: 1246 PGISLPSLIAGQPGD-------------PGRPGLDGERGRPG----------------PA 1276
Query: 758 SPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGL---CVLQPFPARSRGLG 814
P P P + + +T P G P+ PGFSGL L+ +G
Sbjct: 1277 GPPGPP--GPSSNQGDTGDPGFPGIPGPKGPKGDQGIPGFSGLPGELGLKGMRGEPGFMG 1334
Query: 815 VPSQQGPTGSPG 826
P + GP G PG
Sbjct: 1335 TPGKVGPPGDPG 1346
Score = 46.2 bits (108), Expect = 1e-04
Identities = 97/391 (24%), Positives = 128/391 (32%), Gaps = 71/391 (18%)
Query: 471 GRPGR--VAGASGRRGASQARGGTGRAPARLRRGRGMPGRVG-NGVGEGRGASEPEGEPE 527
G PG+ + G G G ++G TG G PG G G+ +G G P
Sbjct: 727 GLPGKDGLPGMIGSPGLPGSKGATGDI---FGAENGAPGEQGLQGLTGHKGFLGDSGLP- 782
Query: 528 PRARADLEVLQAGFERLQSLPELAERLGGR----CPGQVA----------HGVLARAGLL 573
G + + P L G R PGQV +G+ ++GL
Sbjct: 783 ------------GLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLP 830
Query: 574 AAAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAA 633
A PG++G ++ G +V L GN + ++ GS
Sbjct: 831 GAPGFPGISGHPGKKGTRGKKGPPGS----IVKKGLPGLKGLPGNPGLVGLK-GS----- 880
Query: 634 LNTLGPGSFG-AGLGA-QGPRSSTPECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLC 691
PGS G AGL A GP+ V G PG P PG
Sbjct: 881 -----PGSPGVAGLPALSGPKGEKGSVGFV---------------GFPGIPGLPGIPGTR 920
Query: 692 GPGPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALRKGAP 751
G +PG P GR + + DR P P R W +G+
Sbjct: 921 GLKGIPGSTGKMGPSGRAG---TPGEKGDRGNPGPVGIPSPRRPMSNLWLKGDKGSQGSA 977
Query: 752 REQPPASPAASPCQAPR-APEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARS 810
P +A R P AP L G V+ +P P PGF G+ L S
Sbjct: 978 GSNGFPGPRGDKGEAGRPGPPGLPGAPGLPGIIKGVSGKPGP--PGFMGIRGLPGLKGSS 1035
Query: 811 RGLGVPSQQGPTGSPGCRDRASAPRAGAEAG 841
G P G +GS G R P A G
Sbjct: 1036 GITGFPGMPGESGSQGIRGSPGLPGASGLPG 1066
Score = 42.7 bits (99), Expect = 0.001
Identities = 95/381 (24%), Positives = 125/381 (32%), Gaps = 88/381 (23%)
Query: 457 CWKARGAVPSGRLRGRPGRVAGASGRRGASQARGGTGRAPARLRRGRGMPGRVGNGVGEG 516
C+ +GA RGRPG + G G G G TG + L+ RG PG +G
Sbjct: 42 CFPEKGA------RGRPGPI-GIQGPTGPQGFTGSTGLSG--LKGERGFPGLLGPY--GP 90
Query: 517 RGASEPEGEPEPRARADLEVLQAGFERLQSLPELAERLGGRCPGQVAHGVLARAGLLAAA 576
+G P G P GF + +P + G R P
Sbjct: 91 KGDKGPMGVP-------------GFLGINGIPGHPGQPGPRGP----------------- 120
Query: 577 ARPGLAG-SGVQRALALAAAQLGGWTTCVVSPNL--RRGSRRAGNHRVREIEFGSALLAA 633
PGL G +G Q A+ G+ + P L ++GS+ G +LA
Sbjct: 121 --PGLDGCNGTQGAVGFPGPD--GYPGLLGPPGLPGQKGSK------------GDPVLA- 163
Query: 634 LNTLGPGSFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGP 693
PGSF G P P ++G AP P P P PGL GP
Sbjct: 164 -----PGSFKGMKG-------DPGLPGLDGITGPQGAPGFPGAVGPAGP-----PGLQGP 206
Query: 694 GPVPGGLSVPTPCGRGAGDFSEADLADRAFP-VRGAGPIAGRRRRRGWTFAAALRKGAPR 752
PG L G G + D P G P G G+ KG P
Sbjct: 207 PGPPGPLGPDGNMGLGFQG-EKGVKGDVGLPGPAGPPPSTGELEFMGFPKGKKGSKGEPG 265
Query: 753 EQ-------PPASPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQP 805
+ PP P + + E P L G + + PG G
Sbjct: 266 PKGFPGISGPPGFPGLGTT-GEKGEKGEKGIPGLPGPRGPMGSEGVQGPPGQQGKKGTLG 324
Query: 806 FPARSRGLGVPSQQGPTGSPG 826
FP + G+ Q+G G PG
Sbjct: 325 FPGLNGFQGIEGQKGDIGLPG 345
Score = 42.0 bits (97), Expect = 0.002
Identities = 95/399 (23%), Positives = 135/399 (33%), Gaps = 66/399 (16%)
Query: 469 LRGRPGRVAGASGRRGASQARGGTGR-------APARLRRGRGMPGRVG-NGVGEGRGAS 520
+ G+PG + G G RG+ G G+ P ++ G+PG G G+ G
Sbjct: 787 VHGKPG-LLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGISGHPGKK 845
Query: 521 EPEGEPEPRARADLEVLQAGFERLQSLPELAERLGGR----CPGQVA-------HGVLAR 569
G+ P +++ G L+ LP +G + PG G
Sbjct: 846 GTRGKKGPPG----SIVKKGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPKGEKGS 901
Query: 570 AGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFG-- 627
G + PGL G R L G + P+ R G+ R G
Sbjct: 902 VGFVGFPGIPGLPGIPGTRGLKGIPGSTGK-----MGPSGRAGTPGEKGDRGNPGPVGIP 956
Query: 628 ------SALLAALNTLGPGSFGAGLGAQGPRSSTPEC-----PVVNGSEWGLAAPLSPER 676
S L + GS G+ G GPR E P + G+ GL +
Sbjct: 957 SPRRPMSNLWLKGDKGSQGSAGSN-GFPGPRGDKGEAGRPGPPGLPGAP-GLPGIIKGVS 1014
Query: 677 GSPGRPAFLRS---PGLCGPGPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAG 733
G PG P F+ PGL G + G +P G S+ P GA + G
Sbjct: 1015 GKPGPPGFMGIRGLPGLKGSSGITGFPGMPGESG------SQGIRGSPGLP--GASGLPG 1066
Query: 734 RRRRRGWTFAAALRKGAPREQPPASPAASPCQAPRAPEK---ETEAPRLRGRATAVAPRP 790
+ G T + G+P P P S + + + P +G V
Sbjct: 1067 LKGDNGQTVEIS---GSPG--PKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSG 1121
Query: 791 ---LPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPG 826
LP APGF G+ ++ P G GP GSPG
Sbjct: 1122 DVGLPGAPGFPGVAGMRGEPGLPGSSGHQGAIGPLGSPG 1160
Score = 41.6 bits (96), Expect = 0.003
Identities = 100/373 (26%), Positives = 122/373 (32%), Gaps = 41/373 (10%)
Query: 470 RGRPGRVAGASGRRGASQARGGTGRAPARLRRGRGMPGRVGNGVGEGRGASEPEGEPEPR 529
+G G+V G SG G A G G A +R G+PG G+ +GA P G P
Sbjct: 1111 KGEDGKV-GVSGDVGLPGAPGFPG--VAGMRGEPGLPGSSGH-----QGAIGPLGSPGLI 1162
Query: 530 ARADLEVLQAGFERLQSLPELAERLGGR-CPGQVAHGVLARAGLLAAAARPGLAGSGVQR 588
GF L L L G PG GV AGL G G G+
Sbjct: 1163 GPKGFP----GFPGLHGLNGLPGTKGTHGTPGPSITGVPGPAGLPGPKGEKGYPGIGIG- 1217
Query: 589 ALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPGSFGAGLGA 648
A L G P L+ AG I S + G G
Sbjct: 1218 --APGKPGLRGQKGDRGFPGLQGP---AGLPGAPGISLPSLIAGQPGDPGRPGLDGERGR 1272
Query: 649 QGPRSST-PECPVVNGSEWG------LAAPLSPERGSPGRPAFLRSPG---LCGPGPVPG 698
GP P P N + G + P P +G G P F PG L G PG
Sbjct: 1273 PGPAGPPGPPGPSSNQGDTGDPGFPGIPGPKGP-KGDQGIPGFSGLPGELGLKGMRGEPG 1331
Query: 699 GLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALRKGAPREQP--- 755
+ P G GD + +A P RG+ + G + A + G P P
Sbjct: 1332 FMGTPGKVGP-PGDPGFPGMKGKAGP-RGSSGLQGDPGQTPTAEAVQVPPG-PLGLPGID 1388
Query: 756 --PASPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGL 813
P Q P + P + G+ P LP PG G L
Sbjct: 1389 GIPGLTGDPGAQGPVGLQGSKGLPGIPGKD---GPSGLPGPPGALGDPGLPGLQGPPGFE 1445
Query: 814 GVPSQQGPTGSPG 826
G P QQGP G PG
Sbjct: 1446 GAPGQQGPFGMPG 1458
Score = 40.4 bits (93), Expect = 0.007
Identities = 115/461 (24%), Positives = 144/461 (31%), Gaps = 90/461 (19%)
Query: 454 RGP-----CWKARGAVPSGRLRGRPGRVAGASGRRGASQARGGTGRAPARLRRGRGMPGR 508
RGP C +GAV G PG + G G G ++G AP + +G PG
Sbjct: 118 RGPPGLDGCNGTQGAVGFPGPDGYPG-LLGPPGLPGQKGSKGDPVLAPGSFKGMKGDPGL 176
Query: 509 VGNGVGEGRGASEPEGEPE-PRARADLEVLQAGFERLQSLPELAERLGGRCPGQVAHGVL 567
G G + P+G P P A V AG LQ P LG G + G
Sbjct: 177 PGLD-----GITGPQGAPGFPGA-----VGPAGPPGLQGPPGPPGPLGP--DGNMGLGFQ 224
Query: 568 ARAGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFG 627
G+ PG AG G + P ++GS+ + G
Sbjct: 225 GEKGVKGDVGLPGPAGPPPST----------GELEFMGFPKGKKGSKGEPGPKGFPGISG 274
Query: 628 SALLAALNTLG-------------PGSFG--AGLGAQGP-----RSSTPECPVVNG---- 663
L T G PG G G QGP + T P +NG
Sbjct: 275 PPGFPGLGTTGEKGEKGEKGIPGLPGPRGPMGSEGVQGPPGQQGKKGTLGFPGLNGFQGI 334
Query: 664 ----SEWGLAAP----------LSPERGSPGRPAF--LRSP----GLCGPGPVPG--GLS 701
+ GL P +S G PG P L+ GL GP VPG LS
Sbjct: 335 EGQKGDIGLPGPDVFIDIDGAVISGNPGDPGVPGLPGLKGDEGIQGLRGPSGVPGLPALS 394
Query: 702 -VPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALRKGAPREQPPASPA 760
VP G + D + GA + GR G P P P
Sbjct: 395 GVPGALGPQGFPGLKGDQGNPGRTTIGAAGLPGR-------------DGLPGPPGPPGPP 441
Query: 761 ASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQG 820
+ + KE+ P LRG L G SG C + G P G
Sbjct: 442 SPEFETETLHNKESGFPGLRGEQGPKGNLGLKGIKGDSGFCACDGGVPNTGPPGEPGPPG 501
Query: 821 PTGSPGCRDRASAPRAGAEAGSMETFLRNGGLYPPPSPRAP 861
P G G A R +G + GL P P P
Sbjct: 502 PWGLIGLPGLKGA-RGDRGSGGAQGPAGAPGLVGPLGPSGP 541
Score = 38.1 bits (87), Expect = 0.036
Identities = 92/370 (24%), Positives = 118/370 (31%), Gaps = 87/370 (23%)
Query: 476 VAGASGRRGASQARGGTGRAPARLRRGRGMPGRVGNGVGEGRGASEPEGEPEPRARAD-L 534
V GA G +G +G G G+PGR G G P G P P + L
Sbjct: 396 VPGALGPQGFPGLKGDQGNPGRTTIGAAGLPGRDGLP-----GPPGPPGPPSPEFETETL 450
Query: 535 EVLQAGFERLQSLPELAERLGGR----------CPGQVAH----GVLARAGLLAAAARPG 580
++GF L+ LG + C G V + G G PG
Sbjct: 451 HNKESGFPGLRGEQGPKGNLGLKGIKGDSGFCACDGGVPNTGPPGEPGPPGPWGLIGLPG 510
Query: 581 LAGSGVQRALALAAAQLGG-WTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGP 639
L G+ R A G + P+ +G + G +L+ + + P
Sbjct: 511 LKGARGDRGSGGAQGPAGAPGLVGPLGPSGPKGKK------------GEPILSTIQGM-P 557
Query: 640 GSFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGG 699
G G G+QG R E P +G P P G G P PGL PG
Sbjct: 558 GDRGDS-GSQGFRGVIGE-PGKDGVPGLPGLPGLPGDGGQGFPGEKGLPGL------PGE 609
Query: 700 LSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALRKGAPREQ--PPA 757
P P G P G + G R G + G P +Q P +
Sbjct: 610 KGHPGPPG---------------LPGNGLPGLPGPRGLPG----DKGKDGLPGQQGLPGS 650
Query: 758 SPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGL-GVP 816
PC P + P P PGF G P SRGL G P
Sbjct: 651 KGITLPCIIPGS----------------YGPSGFPGTPGFPG-------PKGSRGLPGTP 687
Query: 817 SQQGPTGSPG 826
Q G +GS G
Sbjct: 688 GQPGSSGSKG 697
Score = 32.3 bits (72), Expect = 2.0
Identities = 53/211 (25%), Positives = 70/211 (33%), Gaps = 51/211 (24%)
Query: 675 ERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGAGDFSEADLADR---------AFP- 724
+ G PG PGL GP G P G+ S + FP
Sbjct: 778 DSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPG 837
Query: 725 VRGAGPIAGRRRRRGWTFAAALRKGAP-------------REQPPASPAASPCQAPRAPE 771
+ G G R ++G + ++KG P + P SP + A P+
Sbjct: 838 ISGHPGKKGTRGKKG-PPGSIVKKGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPK 896
Query: 772 KETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGL-GVPSQQGPTGSPGCRDR 830
E +G V +P PG G +RGL G+P G TG G R
Sbjct: 897 GE------KGSVGFVGFPGIPGLPGIPG----------TRGLKGIP---GSTGKMGPSGR 937
Query: 831 ASAPRAGAEAGSMETFLRNGGLYPPPSPRAP 861
A P + G N G PSPR P
Sbjct: 938 AGTPGEKGDRG-------NPGPVGIPSPRRP 961
>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
sapiens]
Length = 1690
Score = 56.2 bits (134), Expect = 1e-07
Identities = 96/372 (25%), Positives = 132/372 (35%), Gaps = 64/372 (17%)
Query: 469 LRGRPGRVAGASGRRGASQARGGTGRAPARLRRGRGMPGRVG--NGVGEGRGASEPEGEP 526
+RG PG + G+SG G G +G +R G+PG G G+ E G P
Sbjct: 1024 IRGLPG-LKGSSGITGFPGMPGESGSQG--IRGSPGLPGASGLPGLKGDNGQTVEISGSP 1080
Query: 527 EPRARADLEVLQAGFERLQSLPELAERLGGRCPGQVAH----GVLARAGLLAAAARPGLA 582
P+ + ++GF+ + L +G PG GV GL A PG+A
Sbjct: 1081 GPKGQPG----ESGFKGTKGRDGLIGNIG--FPGNKGEDGKVGVSGDVGLPGAPGFPGVA 1134
Query: 583 GSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPGSF 642
G + L ++ G + SP L G + + T GP
Sbjct: 1135 GMRGEPGLPGSSGHQGAIGP-LGSPGLIGPKGFPGFPGLHGLNGLPGTKGTHGTPGPSIT 1193
Query: 643 GAG--LGAQGPRSSTPECPVVNGSEWGLAAPLSPE-RGSPGRPAFLRSPGLCGPGPVPG- 698
G G GP+ + G+ AP P RG G F PGL GP +PG
Sbjct: 1194 GVPGPAGLPGPKGEKGYPGI------GIGAPGKPGLRGQKGDRGF---PGLQGPAGLPGA 1244
Query: 699 -GLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALRKGAPREQPPA 757
G+S+P+ GD G + G R R G PA
Sbjct: 1245 PGISLPSLIAGQPGD-------------PGRPGLDGERGRPG----------------PA 1275
Query: 758 SPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGL---CVLQPFPARSRGLG 814
P P P + + +T P G P+ PGFSGL L+ +G
Sbjct: 1276 GPPGPP--GPSSNQGDTGDPGFPGIPGPKGPKGDQGIPGFSGLPGELGLKGMRGEPGFMG 1333
Query: 815 VPSQQGPTGSPG 826
P + GP G PG
Sbjct: 1334 TPGKVGPPGDPG 1345
Score = 46.2 bits (108), Expect = 1e-04
Identities = 97/391 (24%), Positives = 128/391 (32%), Gaps = 71/391 (18%)
Query: 471 GRPGR--VAGASGRRGASQARGGTGRAPARLRRGRGMPGRVG-NGVGEGRGASEPEGEPE 527
G PG+ + G G G ++G TG G PG G G+ +G G P
Sbjct: 726 GLPGKDGLPGMIGSPGLPGSKGATGDI---FGAENGAPGEQGLQGLTGHKGFLGDSGLP- 781
Query: 528 PRARADLEVLQAGFERLQSLPELAERLGGR----CPGQVA----------HGVLARAGLL 573
G + + P L G R PGQV +G+ ++GL
Sbjct: 782 ------------GLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLP 829
Query: 574 AAAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAA 633
A PG++G ++ G +V L GN + ++ GS
Sbjct: 830 GAPGFPGISGHPGKKGTRGKKGPPGS----IVKKGLPGLKGLPGNPGLVGLK-GS----- 879
Query: 634 LNTLGPGSFG-AGLGA-QGPRSSTPECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLC 691
PGS G AGL A GP+ V G PG P PG
Sbjct: 880 -----PGSPGVAGLPALSGPKGEKGSVGFV---------------GFPGIPGLPGIPGTR 919
Query: 692 GPGPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALRKGAP 751
G +PG P GR + + DR P P R W +G+
Sbjct: 920 GLKGIPGSTGKMGPSGRAG---TPGEKGDRGNPGPVGIPSPRRPMSNLWLKGDKGSQGSA 976
Query: 752 REQPPASPAASPCQAPR-APEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARS 810
P +A R P AP L G V+ +P P PGF G+ L S
Sbjct: 977 GSNGFPGPRGDKGEAGRPGPPGLPGAPGLPGIIKGVSGKPGP--PGFMGIRGLPGLKGSS 1034
Query: 811 RGLGVPSQQGPTGSPGCRDRASAPRAGAEAG 841
G P G +GS G R P A G
Sbjct: 1035 GITGFPGMPGESGSQGIRGSPGLPGASGLPG 1065
Score = 44.7 bits (104), Expect = 4e-04
Identities = 109/433 (25%), Positives = 143/433 (33%), Gaps = 100/433 (23%)
Query: 405 VHPGQHLPLQLIDLALQQILEAVGLAGGIEAAVLLRGARAGETTPLGEARGPCWKARGAV 464
+HPG L L L+ L L + L A G G G G + C+ +GA
Sbjct: 1 MHPG--LWLLLVTLCLTEELAAAGEKS--------YGKPCGGQDCSGSCQ--CFPEKGA- 47
Query: 465 PSGRLRGRPGRVAGASGRRGASQARGGTGRAPARLRRGRGMPGRVGNGVGEGRGASEPEG 524
RGRPG + G G G G TG + L+ RG PG +G +G P G
Sbjct: 48 -----RGRPGPI-GIQGPTGPQGFTGSTGLSG--LKGERGFPGLLGPY--GPKGDKGPMG 97
Query: 525 EPEPRARADLEVLQAGFERLQSLPELAERLGGRCPGQVAHGVLARAGLLAAAARPGLAG- 583
P GF + +P + G R P PGL G
Sbjct: 98 VP-------------GFLGINGIPGHPGQPGPRGP-------------------PGLDGC 125
Query: 584 SGVQRALALAAAQLGGWTTCVVSPNL--RRGSRRAGNHRVREIEFGSALLAALNTLGPGS 641
+G Q A+ G+ + P L ++GS+ G +LA PGS
Sbjct: 126 NGTQGAVGFPGPD--GYPGLLGPPGLPGQKGSK------------GDPVLA------PGS 165
Query: 642 FGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGGLS 701
F G P P ++G AP P P P PGL GP PG L
Sbjct: 166 FKGMKG-------DPGLPGLDGITGPQGAPGFPGAVGPAGP-----PGLQGPPGPPGPLG 213
Query: 702 VPTPCGRGAGDFSEADLADRAFP-VRGAGPIAGRRRRRGWTFAAALRKGAPREQ------ 754
G G + D P G P G G+ KG P +
Sbjct: 214 PDGNMGLGFQG-EKGVKGDVGLPGPAGPPPSTGELEFMGFPKGKKGSKGEPGPKGFPGIS 272
Query: 755 -PPASPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGL 813
PP P + + E P L G + + PG G FP +
Sbjct: 273 GPPGFPGLGTT-GEKGEKGEKGIPGLPGPRGPMGSEGVQGPPGQQGKKGTLGFPGLNGFQ 331
Query: 814 GVPSQQGPTGSPG 826
G+ Q+G G PG
Sbjct: 332 GIEGQKGDIGLPG 344
Score = 42.0 bits (97), Expect = 0.002
Identities = 95/399 (23%), Positives = 135/399 (33%), Gaps = 66/399 (16%)
Query: 469 LRGRPGRVAGASGRRGASQARGGTGR-------APARLRRGRGMPGRVG-NGVGEGRGAS 520
+ G+PG + G G RG+ G G+ P ++ G+PG G G+ G
Sbjct: 786 VHGKPG-LLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGISGHPGKK 844
Query: 521 EPEGEPEPRARADLEVLQAGFERLQSLPELAERLGGR----CPGQVA-------HGVLAR 569
G+ P +++ G L+ LP +G + PG G
Sbjct: 845 GTRGKKGPPG----SIVKKGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPKGEKGS 900
Query: 570 AGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFG-- 627
G + PGL G R L G + P+ R G+ R G
Sbjct: 901 VGFVGFPGIPGLPGIPGTRGLKGIPGSTGK-----MGPSGRAGTPGEKGDRGNPGPVGIP 955
Query: 628 ------SALLAALNTLGPGSFGAGLGAQGPRSSTPEC-----PVVNGSEWGLAAPLSPER 676
S L + GS G+ G GPR E P + G+ GL +
Sbjct: 956 SPRRPMSNLWLKGDKGSQGSAGSN-GFPGPRGDKGEAGRPGPPGLPGAP-GLPGIIKGVS 1013
Query: 677 GSPGRPAFLRS---PGLCGPGPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAG 733
G PG P F+ PGL G + G +P G S+ P GA + G
Sbjct: 1014 GKPGPPGFMGIRGLPGLKGSSGITGFPGMPGESG------SQGIRGSPGLP--GASGLPG 1065
Query: 734 RRRRRGWTFAAALRKGAPREQPPASPAASPCQAPRAPEK---ETEAPRLRGRATAVAPRP 790
+ G T + G+P P P S + + + P +G V
Sbjct: 1066 LKGDNGQTVEIS---GSPG--PKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSG 1120
Query: 791 ---LPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPG 826
LP APGF G+ ++ P G GP GSPG
Sbjct: 1121 DVGLPGAPGFPGVAGMRGEPGLPGSSGHQGAIGPLGSPG 1159
Score = 41.6 bits (96), Expect = 0.003
Identities = 100/373 (26%), Positives = 122/373 (32%), Gaps = 41/373 (10%)
Query: 470 RGRPGRVAGASGRRGASQARGGTGRAPARLRRGRGMPGRVGNGVGEGRGASEPEGEPEPR 529
+G G+V G SG G A G G A +R G+PG G+ +GA P G P
Sbjct: 1110 KGEDGKV-GVSGDVGLPGAPGFPG--VAGMRGEPGLPGSSGH-----QGAIGPLGSPGLI 1161
Query: 530 ARADLEVLQAGFERLQSLPELAERLGGR-CPGQVAHGVLARAGLLAAAARPGLAGSGVQR 588
GF L L L G PG GV AGL G G G+
Sbjct: 1162 GPKGFP----GFPGLHGLNGLPGTKGTHGTPGPSITGVPGPAGLPGPKGEKGYPGIGIG- 1216
Query: 589 ALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPGSFGAGLGA 648
A L G P L+ AG I S + G G
Sbjct: 1217 --APGKPGLRGQKGDRGFPGLQGP---AGLPGAPGISLPSLIAGQPGDPGRPGLDGERGR 1271
Query: 649 QGPRSST-PECPVVNGSEWG------LAAPLSPERGSPGRPAFLRSPG---LCGPGPVPG 698
GP P P N + G + P P +G G P F PG L G PG
Sbjct: 1272 PGPAGPPGPPGPSSNQGDTGDPGFPGIPGPKGP-KGDQGIPGFSGLPGELGLKGMRGEPG 1330
Query: 699 GLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALRKGAPREQP--- 755
+ P G GD + +A P RG+ + G + A + G P P
Sbjct: 1331 FMGTPGKVGP-PGDPGFPGMKGKAGP-RGSSGLQGDPGQTPTAEAVQVPPG-PLGLPGID 1387
Query: 756 --PASPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGL 813
P Q P + P + G+ P LP PG G L
Sbjct: 1388 GIPGLTGDPGAQGPVGLQGSKGLPGIPGKD---GPSGLPGPPGALGDPGLPGLQGPPGFE 1444
Query: 814 GVPSQQGPTGSPG 826
G P QQGP G PG
Sbjct: 1445 GAPGQQGPFGMPG 1457
Score = 40.4 bits (93), Expect = 0.007
Identities = 115/461 (24%), Positives = 144/461 (31%), Gaps = 90/461 (19%)
Query: 454 RGP-----CWKARGAVPSGRLRGRPGRVAGASGRRGASQARGGTGRAPARLRRGRGMPGR 508
RGP C +GAV G PG + G G G ++G AP + +G PG
Sbjct: 117 RGPPGLDGCNGTQGAVGFPGPDGYPG-LLGPPGLPGQKGSKGDPVLAPGSFKGMKGDPGL 175
Query: 509 VGNGVGEGRGASEPEGEPE-PRARADLEVLQAGFERLQSLPELAERLGGRCPGQVAHGVL 567
G G + P+G P P A V AG LQ P LG G + G
Sbjct: 176 PGLD-----GITGPQGAPGFPGA-----VGPAGPPGLQGPPGPPGPLGP--DGNMGLGFQ 223
Query: 568 ARAGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFG 627
G+ PG AG G + P ++GS+ + G
Sbjct: 224 GEKGVKGDVGLPGPAGPPPST----------GELEFMGFPKGKKGSKGEPGPKGFPGISG 273
Query: 628 SALLAALNTLG-------------PGSFG--AGLGAQGP-----RSSTPECPVVNG---- 663
L T G PG G G QGP + T P +NG
Sbjct: 274 PPGFPGLGTTGEKGEKGEKGIPGLPGPRGPMGSEGVQGPPGQQGKKGTLGFPGLNGFQGI 333
Query: 664 ----SEWGLAAP----------LSPERGSPGRPAF--LRSP----GLCGPGPVPG--GLS 701
+ GL P +S G PG P L+ GL GP VPG LS
Sbjct: 334 EGQKGDIGLPGPDVFIDIDGAVISGNPGDPGVPGLPGLKGDEGIQGLRGPSGVPGLPALS 393
Query: 702 -VPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALRKGAPREQPPASPA 760
VP G + D + GA + GR G P P P
Sbjct: 394 GVPGALGPQGFPGLKGDQGNPGRTTIGAAGLPGR-------------DGLPGPPGPPGPP 440
Query: 761 ASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQG 820
+ + KE+ P LRG L G SG C + G P G
Sbjct: 441 SPEFETETLHNKESGFPGLRGEQGPKGNLGLKGIKGDSGFCACDGGVPNTGPPGEPGPPG 500
Query: 821 PTGSPGCRDRASAPRAGAEAGSMETFLRNGGLYPPPSPRAP 861
P G G A R +G + GL P P P
Sbjct: 501 PWGLIGLPGLKGA-RGDRGSGGAQGPAGAPGLVGPLGPSGP 540
Score = 38.1 bits (87), Expect = 0.036
Identities = 92/370 (24%), Positives = 118/370 (31%), Gaps = 87/370 (23%)
Query: 476 VAGASGRRGASQARGGTGRAPARLRRGRGMPGRVGNGVGEGRGASEPEGEPEPRARAD-L 534
V GA G +G +G G G+PGR G G P G P P + L
Sbjct: 395 VPGALGPQGFPGLKGDQGNPGRTTIGAAGLPGRDGLP-----GPPGPPGPPSPEFETETL 449
Query: 535 EVLQAGFERLQSLPELAERLGGR----------CPGQVAH----GVLARAGLLAAAARPG 580
++GF L+ LG + C G V + G G PG
Sbjct: 450 HNKESGFPGLRGEQGPKGNLGLKGIKGDSGFCACDGGVPNTGPPGEPGPPGPWGLIGLPG 509
Query: 581 LAGSGVQRALALAAAQLGG-WTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGP 639
L G+ R A G + P+ +G + G +L+ + + P
Sbjct: 510 LKGARGDRGSGGAQGPAGAPGLVGPLGPSGPKGKK------------GEPILSTIQGM-P 556
Query: 640 GSFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGG 699
G G G+QG R E P +G P P G G P PGL PG
Sbjct: 557 GDRGDS-GSQGFRGVIGE-PGKDGVPGLPGLPGLPGDGGQGFPGEKGLPGL------PGE 608
Query: 700 LSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALRKGAPREQ--PPA 757
P P G P G + G R G + G P +Q P +
Sbjct: 609 KGHPGPPG---------------LPGNGLPGLPGPRGLPG----DKGKDGLPGQQGLPGS 649
Query: 758 SPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGL-GVP 816
PC P + P P PGF G P SRGL G P
Sbjct: 650 KGITLPCIIPGS----------------YGPSGFPGTPGFPG-------PKGSRGLPGTP 686
Query: 817 SQQGPTGSPG 826
Q G +GS G
Sbjct: 687 GQPGSSGSKG 696
Score = 32.3 bits (72), Expect = 2.0
Identities = 53/211 (25%), Positives = 70/211 (33%), Gaps = 51/211 (24%)
Query: 675 ERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGAGDFSEADLADR---------AFP- 724
+ G PG PGL GP G P G+ S + FP
Sbjct: 777 DSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPG 836
Query: 725 VRGAGPIAGRRRRRGWTFAAALRKGAP-------------REQPPASPAASPCQAPRAPE 771
+ G G R ++G + ++KG P + P SP + A P+
Sbjct: 837 ISGHPGKKGTRGKKG-PPGSIVKKGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPK 895
Query: 772 KETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGL-GVPSQQGPTGSPGCRDR 830
E +G V +P PG G +RGL G+P G TG G R
Sbjct: 896 GE------KGSVGFVGFPGIPGLPGIPG----------TRGLKGIP---GSTGKMGPSGR 936
Query: 831 ASAPRAGAEAGSMETFLRNGGLYPPPSPRAP 861
A P + G N G PSPR P
Sbjct: 937 AGTPGEKGDRG-------NPGPVGIPSPRRP 960
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 55.8 bits (133), Expect = 2e-07
Identities = 108/450 (24%), Positives = 147/450 (32%), Gaps = 51/450 (11%)
Query: 429 LAGGIEAAVLLRGARAGETTP-LGEARGPCWKARGAVPSGRLRGRPGRVAGASGRRGASQ 487
L G +E+ + A P E R A GA+ + + G P AGA+G A+
Sbjct: 25 LVGSLESQLAASAAHHHHLAPRTPEVRAA---AAGALGNHVVSGSP---AGAAGAGPAAP 78
Query: 488 ARGGTGRAPARLRRGRGMPGRVGNGVGEGRGASEPEGEPEPRARADLEVLQAGFERLQSL 547
A G G AP GR PG G G P G P PR +L+
Sbjct: 79 AEGAPGAAPEPPPAGRARPG--------GGGPQRP-GPPSPRRPLVPAGPAPPAAKLRPP 129
Query: 548 PELAERLGGRCPGQVAHGVLARAGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVVSP 607
PE + G C + A +AA P AG A AA+ G P
Sbjct: 130 PEGS---AGSC------APVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGP 180
Query: 608 NLRRG-SRRAGNHRVREIEFGSALLAALNTLGPGSFGAGLGAQG----PRSSTPECPVVN 662
G + AG + + +ALL + + P G P+ + P +
Sbjct: 181 GPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQT 240
Query: 663 GSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGAGDFSEA------ 716
G AAP +P SP +P P P P ++ P G AG + A
Sbjct: 241 PPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPP 300
Query: 717 -------DLADRAFPVRGAGPIAGRRRRRG-WTFAAALRKGAPREQPPASPAASPCQAPR 768
P AG AG + G AAA G E P A+P P
Sbjct: 301 AAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAP---PA 357
Query: 769 APEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPGCR 828
A P + + P A P + + P PA G+P +
Sbjct: 358 AQTLAASGPASTAASMVIGPTMQGALPSPAAV----PPPAPGTPTGLPKGAAGAVTQSLS 413
Query: 829 DRASAPRAGAEAGSMETFLRNGGLYPPPSP 858
+A +G A T L PP +P
Sbjct: 414 RTPTATTSGIRATLTPTVLAPRLPQPPQNP 443
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 54.3 bits (129), Expect = 5e-07
Identities = 124/456 (27%), Positives = 155/456 (33%), Gaps = 69/456 (15%)
Query: 427 VGLAGGIEAAVLLRGAR--------AGETTPLGEARGPCWKARGAVPSGRLRGRPGRVA- 477
VGL G V RG + AG T P GE P G + S G PG+
Sbjct: 208 VGLMPGSVGPVGPRGPQGLQGQQGGAGPTGPPGEPGDP--GPMGPIGSRGPEGPPGKPGE 265
Query: 478 -GASGRRGASQARGGTGRAPARLRRGR-GMPGRVGNGVGEG-RGASEPEGEPEPRARADL 534
G GR G G G AR G G+PG G+ +G G G P + A
Sbjct: 266 DGEPGRNGNPGEVGFAGSPGARGFPGAPGLPGLKGHRGHKGLEGPKGEVGAPGSKGEAGP 325
Query: 535 EVLQAGFERL--QSLPELAERLGGR-CPGQV-AHGVLARAGLLAAAARPGLAGSGVQRAL 590
L + +P RLG + PGQ AHG+ + G + PG +G +
Sbjct: 326 TGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMPGKPGPMGPLGIPGSSGFPGNPGM 385
Query: 591 ALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPGSFGAG--LGA 648
A G RG R G L PG+ G GA
Sbjct: 386 KGEAGPTGA-----------RGPEGPQGQRGETGPPGPVGSPGL----PGAIGTDGTPGA 430
Query: 649 QGPRSSTPECPVVNGSEWGLAAPLSPE----------RGSPGRPAFLRSPGLCGPGPVPG 698
+GP S P +G P SP RG PG P G GP PG
Sbjct: 431 KGPTGS----PGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGDPGVPGFKGEAGPKGEPG 486
Query: 699 GLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIA--GRRRRRGWTFAAAL--RKGAPREQ 754
+ P G + D V GP+ G RG+ + L KGA E+
Sbjct: 487 PHGIQGPIGPPGEEGKRGPRGDPG-TVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGER 545
Query: 755 PP---ASPAASPCQAPRAPEKETEAPR-LRGRATAVAPR----PLPAAPGFSGLCVLQPF 806
P + P S R E R L G P PL APG G +P
Sbjct: 546 GPVGSSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPL-GAPGEDG----RPG 600
Query: 807 PARSRGLGVPSQQGPTGSPGCRDRASAPRAGAEAGS 842
P S +G+ Q G G PG + + P EAG+
Sbjct: 601 PPGS--IGIRGQPGSMGLPGPKGSSGDPGKPGEAGN 634
Score = 50.1 bits (118), Expect = 9e-06
Identities = 108/403 (26%), Positives = 132/403 (32%), Gaps = 53/403 (13%)
Query: 455 GPCWKARGAVPSGRLRGRPGRVAGASGRRGASQARGGTGRAPARLRRG----RGMPGRVG 510
GP P G L+G PG G +G G RGG G A G RG+PG +G
Sbjct: 747 GPSGTPGDTGPPG-LQGMPGE-RGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGLPGPLG 804
Query: 511 NGVGEGRGASEPEGEPEPRARADLEVLQAGFERLQSLPELAERLGGRCPGQVAHGVLARA 570
G + +GEP PR L P G R G + A
Sbjct: 805 PP--GPAGPTGEKGEPGPRG-------------LVGPPGSRGNPGSRGENGPT-GAVGFA 848
Query: 571 GLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRA-GNHRVREIEFGSA 629
G +PG+ G + A G P GS G + V ++ G
Sbjct: 849 GPQGPDGQPGVKGEPGEPGQKGDAGSPG--------PQGLAGSPGPHGPNGVPGLKGGRG 900
Query: 630 LLAALNTLG-PGSFGAGLGAQGPRSST-PECPVVNGSEWGLAAPLSPERGSPGRPAFLRS 687
G PGS G +G GP + P P+ E G P RG PG +
Sbjct: 901 TQGPPGATGFPGSAGR-VGPPGPAGAPGPAGPL---GEPGKEGPPGL-RGDPGSHGRVGD 955
Query: 688 PGLCGPGPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGW------- 740
G GP PG P G+ D RG + G+R RG
Sbjct: 956 RGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTG--QRGIVGMPGQRGERGMPGLPGPA 1013
Query: 741 -TFAAALRKGAPREQPPASPAASPCQAPRAPEKETEAPR----LRGRATAVAPRPLPAAP 795
T GA ++ P P P E E P GR AV R P
Sbjct: 1014 GTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDP 1073
Query: 796 GFSGLCVLQPFPARSRGLGVPSQQGPTGSPGCRDRASAP-RAG 837
G +GL Q P +G P G G PG R P RAG
Sbjct: 1074 GPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGRAG 1116
Score = 49.7 bits (117), Expect = 1e-05
Identities = 60/211 (28%), Positives = 72/211 (34%), Gaps = 28/211 (13%)
Query: 636 TLGPGSFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSP--------ERGSPGRPAFLRS 687
T G G+ G G +G + PVV G G P P ERG GRP
Sbjct: 99 TPGGGNTNFGRGRKGQKGEPGLVPVVTGIR-GRPGPAGPPGSQGPRGERGPKGRPGPRGP 157
Query: 688 PGLCGPGPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALR 747
G+ G VPG P P G + D R F + +AG + G L
Sbjct: 158 QGIDGEPGVPGQPGAPGPPGHPS--HPGPDGLSRPF----SAQMAGLDEKSGLGSQVGLM 211
Query: 748 KGAPREQPPASPAASPCQ----APRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVL 803
G+ P P Q P P E P G + P P PG G
Sbjct: 212 PGSVGPVGPRGPQGLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGPPGKPGEDG---- 267
Query: 804 QPFPARSRGLGVPSQQGPTGSPGCRDRASAP 834
P R+ G P + G GSPG R AP
Sbjct: 268 --EPGRN---GNPGEVGFAGSPGARGFPGAP 293
Score = 46.2 bits (108), Expect = 1e-04
Identities = 108/425 (25%), Positives = 143/425 (33%), Gaps = 95/425 (22%)
Query: 444 AGETTPLGEARGPCWKARGAVPSGRLRGRPGRVAGASGRRGASQARGGTGRAPARLRRGR 503
A TP GE C + G + RGR G+ +G G P + R
Sbjct: 83 ADPVTPPGECCPVCSQTPGGGNTNFGRGRKGQ-------------KGEPGLVPV-VTGIR 128
Query: 504 GMPGRVGNGVGEG-RGASEPEGEPEPRARADLEVLQAGFERLQSLPELAERLGGRCPGQV 562
G PG G +G RG P+G P PR G + + P + + G PG
Sbjct: 129 GRPGPAGPPGSQGPRGERGPKGRPGPR----------GPQGIDGEPGVPGQPGA--PGPP 176
Query: 563 AHGVLARAGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVR 622
H + PG G+ R + AQ+ G ++G
Sbjct: 177 GH-----------PSHPG--PDGLSRPFS---AQMAGL------------DEKSG----- 203
Query: 623 EIEFGSALLAALNTLGPGSFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSPERGSPGRP 682
L + L PGS G +G +GP+ + G + G A P P G PG P
Sbjct: 204 --------LGSQVGLMPGSVGP-VGPRGPQG-------LQGQQGG-AGPTGPP-GEPGDP 245
Query: 683 AFLRSPGLCGPGPVPGGLSVPTPCGRGAGDFSEADLAD----RAFPVRGAGPIAGRRRRR 738
+ G GP PG GR G+ E A R FP GA + G + R
Sbjct: 246 GPMGPIGSRGPEGPPGKPGEDGEPGRN-GNPGEVGFAGSPGARGFP--GAPGLPGLKGHR 302
Query: 739 GWTFAAALRK--GAPREQPPASPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPG 796
G + GAP + A P P P RGR + P+ APG
Sbjct: 303 GHKGLEGPKGEVGAPGSKGEAGPTGP--MGAMGPLGPRGMPGERGR---LGPQ---GAPG 354
Query: 797 FSGLCVLQPFPARSRGLGVPSQQGPTGSPGCRDRASAPRAGAEAGSMETFLRNGGLYPPP 856
G + P LG+P G G+PG + A A G G P
Sbjct: 355 QRGAHGMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPVG 414
Query: 857 SPRAP 861
SP P
Sbjct: 415 SPGLP 419
Score = 44.3 bits (103), Expect = 5e-04
Identities = 118/432 (27%), Positives = 131/432 (30%), Gaps = 103/432 (23%)
Query: 471 GRPGRVAGASGRRGASQARGGTGRAPARLRRG----RGMPGRVG----NGVGEGRGASEP 522
G PG G G +G G G R RG RG PG G G+ G G P
Sbjct: 684 GPPGE-GGKPGDQGVPGDPGAVGPLGPRGERGNPGERGEPGITGLPGEKGMAGGHGPDGP 742
Query: 523 EGEPEPRARADLEVLQAGFERLQSLPELAERLGGRCPGQVAHGVLARAGLLAAAARPGLA 582
+G P P G LQ +P ER PG R G+ A G A
Sbjct: 743 KGSPGPSGTPG----DTGPPGLQGMP--GERGIAGTPGPKGD----RGGIGEKGAE-GTA 791
Query: 583 GSGVQRALA--LAAAQLGGWTTCVVSPNLRR-----GSRRAGNHRVREIEFGSALLAALN 635
G+ R L L G T P R GSR GN R
Sbjct: 792 GNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSR--GNPGSR------------G 837
Query: 636 TLGPGSFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSP----ERGSPGRPAFLRSPGLC 691
GP G QGP P V G P P + GSPG SPG
Sbjct: 838 ENGPTGAVGFAGPQGPDGQ----PGVKGE------PGEPGQKGDAGSPGPQGLAGSPGPH 887
Query: 692 GPGPVPGGLSVPTPCGRGA-GDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALRKGA 750
GP VPG GRG G A V GP GA
Sbjct: 888 GPNGVPG-----LKGGRGTQGPPGATGFPGSAGRVGPPGP-----------------AGA 925
Query: 751 PREQPPASPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQ------ 804
P PA P P P P GR P P PG G
Sbjct: 926 P---GPAGPLGEP--GKEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPD 980
Query: 805 --PFPARSRG----LGVPSQQGPTGSPGCRDRASAPRAGAEAGSMETFLRNGGLYPP--- 855
P PA + G +G+P Q+G G PG A P G+ G + PP
Sbjct: 981 GPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSN 1040
Query: 856 -----PSPRAPA 862
P P PA
Sbjct: 1041 GPVGEPGPEGPA 1052
Score = 40.4 bits (93), Expect = 0.007
Identities = 112/438 (25%), Positives = 141/438 (32%), Gaps = 83/438 (18%)
Query: 444 AGETTPLGEARGPCWK-ARGAVPSGRLRGRPGRV-----AGASGRRGASQARGGTGRAPA 497
AG P G+ G K A G + RG PG + AG +G +G RG G +
Sbjct: 770 AGTPGPKGDRGGIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGS 829
Query: 498 RLRRG-RGMPGRVGNGVGEGRGASEPEGEP-------EPRARADLEVLQAGFERLQSL-- 547
R G RG G G VG G P+G+P EP + D AG Q L
Sbjct: 830 RGNPGSRGENGPTG-AVGFA-GPQGPDGQPGVKGEPGEPGQKGD-----AGSPGPQGLAG 882
Query: 548 ---PELAERLGGRCPGQVAHGVLARAGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCV 604
P + G G+ G G +A R G G A + G
Sbjct: 883 SPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGPAGPLGEPGK----- 937
Query: 605 VSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPGSFGAGLGAQG-------PRSSTPE 657
P RG G+H + GP G G +G P P
Sbjct: 938 EGPPGLRGD--PGSH------------GRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPP 983
Query: 658 CPVVNGSEWGLAAPLSP--ERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGAGDFS- 714
P + G+ ERG PG P +PG GP G P P G +
Sbjct: 984 GPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPV 1043
Query: 715 -----EADLADRAFPVRGAGPIAGRRRRRGWTFAAAL--RKGAPREQPPAS--------- 758
E + P R G R RG A L +GAP P
Sbjct: 1044 GEPGPEGPAGNDGTPGRDGA--VGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRG 1101
Query: 759 ------PAASPCQAPRAPEKETEAPRL-RGRATAVAPRPLPAAPGFSGLCVLQ--PFPAR 809
P P +A + + PR +G R GF+GL L P P
Sbjct: 1102 DPGSRGPIGPPGRAGKRGLPGPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNG 1161
Query: 810 SRG-LGVPSQQGPTGSPG 826
+G G+P GP G PG
Sbjct: 1162 EQGSAGIPGPFGPRGPPG 1179
Score = 38.9 bits (89), Expect = 0.021
Identities = 108/429 (25%), Positives = 130/429 (30%), Gaps = 76/429 (17%)
Query: 426 AVGLAG--GIEAAVLLRGARAGETTPLGEAR--GPCWKARGAVPSGRLRGRPGRVAGASG 481
AVG AG G + ++G GE G+A GP A P G P V G G
Sbjct: 844 AVGFAGPQGPDGQPGVKG-EPGEPGQKGDAGSPGPQGLAGSPGPHG-----PNGVPGLKG 897
Query: 482 RRGASQARGGTGRAPARLRRGRGMPGRVGN-GVGEGRGASEPEGEPEPRARADLEVLQAG 540
RG G TG G GRVG G G + P GEP + G
Sbjct: 898 GRGTQGPPGATGFP--------GSAGRVGPPGPAGAPGPAGPLGEPG----------KEG 939
Query: 541 FERLQSLPELAERLGGRCP-----GQVAHGVLARAGLLAAAARPGLAGSGVQRALALAAA 595
L+ P R+G R P G G G PG AG+ QR +
Sbjct: 940 PPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPG 999
Query: 596 QLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPGSFGAGLGAQGPRSST 655
Q G RG + G A GP G+ GP
Sbjct: 1000 QRG-----------ERGMPGLPGPAGTPGKVGPT--GATGDKGPPGPVGPPGSNGPVGEP 1046
Query: 656 -PECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGAGDFS 714
PE P N G + ERG G P PG G PG + P G+ S
Sbjct: 1047 GPEGPAGNDGTPGRDGAVG-ERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGS 1105
Query: 715 EADLAD------RAFPV----------RGAGPIAGRRRRRGWTFAAALRKGAPREQPPAS 758
+ R P G G++ RG+T L G P
Sbjct: 1106 RGPIGPPGRAGKRGLPGPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGL-PGPPGPNGEQG 1164
Query: 759 PAASPCQ-APRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGVPS 817
A P PR P G + P P G G + G P
Sbjct: 1165 SAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGPPGVRGSVG---------EAGPEGPPG 1215
Query: 818 QQGPTGSPG 826
+ GP G PG
Sbjct: 1216 EPGPPGPPG 1224
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 54.3 bits (129), Expect = 5e-07
Identities = 119/455 (26%), Positives = 149/455 (32%), Gaps = 73/455 (16%)
Query: 430 AGGIEAAVLLRGARA--GETTPLGEARGPCWK-ARGAV--PSGRLRGRPGRVAGASGRRG 484
A G+ L G R G T G P K A G V P + G PGR G++G
Sbjct: 798 APGLPGIQGLPGPRGPPGPTGEKGAQGSPGVKGATGPVGPPGASVSGPPGR----DGQQG 853
Query: 485 ASQARGGTGRAPARLRRGR---------------GMPGRVGNGVGEG--RGASEPEGEPE 527
+ RG G R +G GMPG G +G G P G P
Sbjct: 854 QTGLRGTPGEKGPRGEKGEPGECSCPSQGDLIFSGMPGAPGLWMGSSWQPGPQGPPGIPG 913
Query: 528 PRARADLEVLQA--GFERLQSLPELAERLG-------------GRC-PGQVAH-GVLARA 570
P + LQ G L P L LG G C GQ AH G L
Sbjct: 914 PPGPPGVPGLQGVPGNNGLPGQPGLTAELGSLPIEQHLLKSICGDCVQGQRAHPGYLVEK 973
Query: 571 GLLAAAARPGLAGS--------GVQRALALAAA--QLGGWTTCVVSPNLRRGSRRAGNHR 620
G PG+ G ++R A A G CV SP L G
Sbjct: 974 GEKGDQGIPGVPGLDNCAQCFLSLERPRAEEARGDNSEGDPGCVGSPGLPGPPGLPGQRG 1033
Query: 621 VREIEFGSALLAALNTLGPGSFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSPERGSPG 680
+GP F +G+ G P + G E GL L+ ++G PG
Sbjct: 1034 EEGPPGMRGSPGPPGPIGPPGFPGAVGSPG-------LPGLQG-ERGLTG-LTGDKGEPG 1084
Query: 681 RPAFLRSPGLCGPGPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGW 740
P PG GP +PG G AG+ E GP AG R RG
Sbjct: 1085 PPGQPGYPGATGPPGLPGIKGERGYTG-SAGEKGEPGPPGSEGLPGPPGP-AGPRGERGP 1142
Query: 741 TFAAALR-----KGAPREQPPASPAASPCQA----PRAPEKETEAPRLRGRATAVAPRPL 791
+ + +G P P P P + P P+ E + +RG +
Sbjct: 1143 QGNSGEKGDQGFQGQPGFPGPPGPPGFPGKVGSPGPPGPQAEKGSEGIRGPSGLPGSPGP 1202
Query: 792 PAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPG 826
P PG G L + G+ GP G PG
Sbjct: 1203 PGPPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPG 1237
Score = 44.3 bits (103), Expect = 5e-04
Identities = 105/435 (24%), Positives = 136/435 (31%), Gaps = 77/435 (17%)
Query: 471 GRPGRVAGASGRRGASQARGGTGRAPARLRRGRG-------------MPGRVGNGVGEGR 517
G PG G +GR G S G G A + +G G M GR G +G
Sbjct: 691 GDPG-TPGTTGRPGLSGEPGVQGPAGPKGEKGDGCTACPSLQGTVTDMAGRPGQPGPKGE 749
Query: 518 GASEPEGEPEPRARADLEVLQAGFERLQSLPELAERLGGRCPGQVAHGVLARAGLLAAAA 577
E G P Q G +Q P L G PG GV G A
Sbjct: 750 QGPEGVGRPGKPG-------QPGLPGVQGPPGLKGVQGE--PGPPGRGVQGPQGEPGAPG 800
Query: 578 RPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTL 637
PG+ G R + G SP ++ + G G+++
Sbjct: 801 LPGIQGLPGPRGPPGPTGEKGAQG----SPGVKGATGPVGPP-------GASVSGP---- 845
Query: 638 GPGSFG----AGL----GAQGPRSSTPE-----CP-----VVNGSE-----WGLAAPLSP 674
PG G GL G +GPR E CP + +G W ++
Sbjct: 846 -PGRDGQQGQTGLRGTPGEKGPRGEKGEPGECSCPSQGDLIFSGMPGAPGLWMGSSWQPG 904
Query: 675 ERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGR 734
+G PG P PG+ G VPG +P G A + + + G+
Sbjct: 905 PQGPPGIPGPPGPPGVPGLQGVPGNNGLPGQPGLTA-ELGSLPIEQHLLKSICGDCVQGQ 963
Query: 735 RRRRGWTFAAALRKGAPREQP-PASPAASPC-------QAPRAPEKETEAPRLRGRATAV 786
R G+ + KG +Q P P C + PRA +E G V
Sbjct: 964 RAHPGYL----VEKGEKGDQGIPGVPGLDNCAQCFLSLERPRA--EEARGDNSEGDPGCV 1017
Query: 787 APRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPGCRDRASAPRAGAEAGSMETF 846
LP PG G + P G P GP G PG P E G
Sbjct: 1018 GSPGLPGPPGLPGQRGEEGPPGMRGSPGPPGPIGPPGFPGAVGSPGLPGLQGERGLTGLT 1077
Query: 847 LRNGGLYPPPSPRAP 861
G PP P P
Sbjct: 1078 GDKGEPGPPGQPGYP 1092
Score = 40.4 bits (93), Expect = 0.007
Identities = 98/405 (24%), Positives = 135/405 (33%), Gaps = 55/405 (13%)
Query: 471 GRPGRVAGASGRRGASQARG--GTGRAPAR--LRRGRGMPGRVGNGVGEG-------RGA 519
G PG G G +G+S G G G P + ++ +G P V + EG G
Sbjct: 467 GDPGGPPGPKGDKGSSGIPGKEGPGGKPGKPGVKGEKGDPCEVCPTLPEGFQNFVGLPGK 526
Query: 520 SEPEGEP-EP-RARADLEVLQAGFERLQSLPELAERLGGR-------CPGQVAHGVLARA 570
P+GEP +P AR D + E+ + + +G + G V
Sbjct: 527 PGPKGEPGDPVPARGDPGIQGIKGEKGEPCLSCSSVVGAQHLVSSTGASGDVGSPGFGLP 586
Query: 571 GLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNH---RVREIEFG 627
GL A PGL G A A G V P +G++ + ++ G
Sbjct: 587 GLPGRAGVPGLKGEKGNFGEAGPAGSPG--PPGPVGPAGIKGAKGEPCEPCPALSNLQDG 644
Query: 628 SALLAALNTLGPGSFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSPERGSPGRPAFLRS 687
+ AL PG G G GP E GL ++G G P +
Sbjct: 645 DVRVVAL----PGPSGEK-GEPGPPGFGLPGKQGKAGERGLKG----QKGDAGNPGDPGT 695
Query: 688 PGLCGPGPVPGGLSVPTPCG----RGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFA 743
PG G + G V P G +G G + L + G G + +G
Sbjct: 696 PGTTGRPGLSGEPGVQGPAGPKGEKGDGCTACPSLQGTVTDMAGRPGQPGPKGEQG---- 751
Query: 744 AALRKGAPREQPPASPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVL 803
+G R P P Q P + P GR P+ P APG G+ L
Sbjct: 752 ---PEGVGRPGKPGQPGLPGVQGPPGLKGVQGEPGPPGRGVQ-GPQGEPGAPGLPGIQGL 807
Query: 804 -----QPFPARSRGL----GVPSQQGPTGSPGCRDRASAPRAGAE 839
P P +G GV GP G PG R G +
Sbjct: 808 PGPRGPPGPTGEKGAQGSPGVKGATGPVGPPGASVSGPPGRDGQQ 852
Score = 37.7 bits (86), Expect = 0.047
Identities = 102/402 (25%), Positives = 127/402 (31%), Gaps = 94/402 (23%)
Query: 469 LRGRPGRVAGASGRRGASQARGGTGRAPARLRRGR----GMPGRVGNGVGEGR-GASEPE 523
LRG PG AG G G +G TG +G G PG G EG GA P+
Sbjct: 1226 LRGDPGP-AGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSTGRPGAEGEPGAMGPQ 1284
Query: 524 GEPEPRARADLEVL--QAGFERLQSLPELAERLGGRCPGQVAHGVLARAGLLAAAARPGL 581
G P P Q G + ++ +R A G AGL PG
Sbjct: 1285 GRPGPPGHVGPPGPPGQPGPAGISAVGLKGDR--------GATGERGLAGLPGQPGPPGH 1336
Query: 582 AGSGVQRALALAAAQLGG-WTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPG 640
G + AA + G P +G A + + E G A + GPG
Sbjct: 1337 PGPPGEPGTDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAGEKGRAGMPG----GPG 1392
Query: 641 SFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGGL 700
G+ +G GP + ERG PG P SPGL G VPG +
Sbjct: 1393 KSGS-MGPVGPPGP------------------AGERGHPGAPGPSGSPGLPG---VPGSM 1430
Query: 701 SVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALRKGAPREQPPASPA 760
GD D R R+ F + R Q P A
Sbjct: 1431 ----------GDMVNYDEIKRFI-----------RQEIIKMFDERMAYYTSRMQFPMEMA 1469
Query: 761 ASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQG 820
A+P + P P K+ R P APG GL P Q G
Sbjct: 1470 AAPGR-PGPPGKDGAPGR-------------PGAPGSPGL---------------PGQIG 1500
Query: 821 PTGSPGCRDRASAPRAGAEAGSMETFLR-NGGLYPPPSPRAP 861
G G P E G + + GL PP P+ P
Sbjct: 1501 REGRQGLPGVRGLPGTKGEKGDIGIGIAGENGLPGPPGPQGP 1542
Score = 37.0 bits (84), Expect = 0.079
Identities = 104/438 (23%), Positives = 131/438 (29%), Gaps = 88/438 (20%)
Query: 462 GAVPSGRLRGRPGRVAGASGRRGASQARGGTGRAPARLRRGRGMPGRVGNGVGEG----- 516
G V S L G PG + G G G RG G P G PG VG+ G
Sbjct: 1015 GCVGSPGLPGPPG-LPGQRGEEGPPGMRGSPG--PPGPIGPPGFPGAVGSPGLPGLQGER 1071
Query: 517 --RGASEPEGEPEPRARADLEVLQAGFERLQSLPELAERLGGRCPGQVAHGVLARAGLLA 574
G + +GEP P Q G+ P L G+ G
Sbjct: 1072 GLTGLTGDKGEPGPPG-------QPGYPGATGPPGLP-------------GIKGERGYTG 1111
Query: 575 AAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAAL 634
+A G G L G P RG + GN + +
Sbjct: 1112 SAGEKGEPGPPGSEGLPGPPGPAG--------PRGERGPQ--GNSGEKGDQGFQGQPGFP 1161
Query: 635 NTLGPGSFGAGLGAQGPRSSTPECPVVNGSEWGLAAP--LSPERGSPGRPAFLRSPGLCG 692
GP F +G+ GP E GSE G+ P L G PG P GL G
Sbjct: 1162 GPPGPPGFPGKVGSPGPPGPQAE----KGSE-GIRGPSGLPGSPGPPGPPGIQGPAGLDG 1216
Query: 693 -------------PGPV--PGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRR 737
PGP PG + P G+ D P G GR
Sbjct: 1217 LDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKP--GPPGSTGRPGA 1274
Query: 738 RGWTFAAALR-----------KGAPREQPPASPAASPCQAPRAPEKETEAPRLRGRATAV 786
G A + G P + PA +A + R E L G+
Sbjct: 1275 EGEPGAMGPQGRPGPPGHVGPPGPPGQPGPAGISAVGLKGDRGATGERGLAGLPGQPGPP 1334
Query: 787 APRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPGC------RDRASAPRAGAEA 840
P PG G + P + G P +G G+ G + RA P ++
Sbjct: 1335 GHPGPPGEPGTDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAGEKGRAGMPGGPGKS 1394
Query: 841 GSMETFLRNGGLYPPPSP 858
GSM G PP P
Sbjct: 1395 GSM-------GPVGPPGP 1405
Score = 32.7 bits (73), Expect = 1.5
Identities = 114/459 (24%), Positives = 151/459 (32%), Gaps = 83/459 (18%)
Query: 440 RGARAGETTPLGEARGPCWKARGA----VPSGRLRGRPGR-VAGASGRRGASQARGGTG- 493
RGA+ + T E AR + PSG G+ R + G G +G ARG
Sbjct: 303 RGAKVHQETAADECPPCVHGARDSNVTLAPSGPKGGKGERGLPGPPGSKGEKGARGNDCV 362
Query: 494 --RAPARLRRGRGMPGRVGNGVGEGRGASEPEGEPEPRARADL--EVLQAGFERLQSLPE 549
A L+ G G G GA P G P E G + + P
Sbjct: 363 RISPDAPLQCAEGPKGEKGES-----GALGPSGLPGSTGEKGQKGEKGDGGIKGVPGKPG 417
Query: 550 LAERLGGRC----PGQVAH-GVLARAGLLAAAARPGLAGS-GVQRALALAAAQLGGWTTC 603
R G C GQ G + GL PGL G G+ L GG
Sbjct: 418 RDGRPGEICVIGPKGQKGDPGFVGPEGLAGEPGPPGLPGPPGI--GLPGTPGDPGG---- 471
Query: 604 VVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPGSFGAGLGAQGPRSSTPE-CPVV- 661
P +G + + +E GPG G +G + E CP +
Sbjct: 472 ---PPGPKGDKGSSGIPGKE--------------GPGGKPGKPGVKGEKGDPCEVCPTLP 514
Query: 662 NGSEWGLAAPLSP-ERGSPGRPAFLRS-PGLCGPGPVPGG--LSVPTPCGR--------G 709
G + + P P +G PG P R PG+ G G LS + G
Sbjct: 515 EGFQNFVGLPGKPGPKGEPGDPVPARGDPGIQGIKGEKGEPCLSCSSVVGAQHLVSSTGA 574
Query: 710 AGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALRKGAPREQPPASPAA------SP 763
+GD P R P G + +G F A G+P P PA P
Sbjct: 575 SGDVGSPGFGLPGLPGRAGVP--GLKGEKG-NFGEAGPAGSPGPPGPVGPAGIKGAKGEP 631
Query: 764 CQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTG 823
C+ A + G VA LP G G +P P G G+P +QG G
Sbjct: 632 CEPCPALSNLQD-----GDVRVVA---LPGPSGEKG----EPGPP---GFGLPGKQGKAG 676
Query: 824 SPGCRDRASAPRAGAEAGSMETFLRNGGLYPPPSPRAPA 862
G + + + G+ T R GL P + PA
Sbjct: 677 ERGLKGQKGDAGNPGDPGTPGTTGR-PGLSGEPGVQGPA 714
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 52.8 bits (125), Expect = 1e-06
Identities = 53/152 (34%), Positives = 56/152 (36%), Gaps = 21/152 (13%)
Query: 711 GDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALRKGAPREQPPASPAASPCQAPRAP 770
G S + A P RGA P A R RG AAA PP +PA P AP A
Sbjct: 89 GSISYRNAARVQPPRRGATPPAPPRAPRGAPAAAAAAA------PPPTPAPPPPPAPVAA 142
Query: 771 EKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPGCRDR 830
APR A P P PA PG P R+ L P P P
Sbjct: 143 AAPARAPRAAAAAATAPPSPGPAQPG--------PRAQRAAPLAAP-PPAPAAPP----- 188
Query: 831 ASAPRAG-AEAGSMETFLRNGGLYPPPSPRAP 861
A AP AG A R L PPP P AP
Sbjct: 189 AVAPPAGPRRAPPPAVAAREPPLPPPPQPPAP 220
Score = 46.2 bits (108), Expect = 1e-04
Identities = 36/127 (28%), Positives = 45/127 (35%), Gaps = 12/127 (9%)
Query: 669 AAPLSPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGA 728
A P +P R G PA + P P P P P A + A A
Sbjct: 106 ATPPAPPRAPRGAPA---AAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSP 162
Query: 729 GPIAGRRRRRGWTFAAALRKGAPREQPPASPAASPCQAPRAPEKETEAPRLRGRATAVAP 788
GP R + + AP PP +PAA P AP A + P + R + P
Sbjct: 163 GPAQPGPRAQ---------RAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREPPLPP 213
Query: 789 RPLPAAP 795
P P AP
Sbjct: 214 PPQPPAP 220
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 52.4 bits (124), Expect = 2e-06
Identities = 110/418 (26%), Positives = 141/418 (33%), Gaps = 75/418 (17%)
Query: 471 GRPGRVAGASGRRGASQARGGTGRAPARLRRGR----GMPGRVGNGVGEGR-GASEPEGE 525
G PG+ GASG G A+G + + +G G PG G GR G + +G+
Sbjct: 539 GLPGK-HGASGPPGNKGAKGDMVVSRVKGHKGERGPDGPPGFPGQPGSHGRDGHAGEKGD 597
Query: 526 PEPRA-RADLEVLQAGFERLQSLPELAERLGGRCPGQVAHGVLARAGLLAAAARPGLAGS 584
P P D GF P A +G PG G G PG+ G
Sbjct: 598 PGPPGDHEDATPGGKGFPGPLGPPGKAGPVGP--PGLGFPGPPGERGHPGVPGHPGVRGP 655
Query: 585 GVQRALALAAAQLGGWTTCVVS---------------------PNLRRGSRRAGNHRVRE 623
+ Q G +C V+ P G + H+ R
Sbjct: 656 DGLKG------QKGDTISCNVTYPGRHGPPGFDGPPGPKGFPGPQGAPGLSGSDGHKGRP 709
Query: 624 IEFGSALLAA----LNTLGPGSFGAGLGAQ--GPRSSTPECPVVNGSEWGLAAPLSPERG 677
G+A + +G FG G+ GP P P VNG + P G
Sbjct: 710 GTPGTAEIPGPPGFRGDMGDPGFGGEKGSSPVGP-PGPPGSPGVNGQKGIPGDPAFGHLG 768
Query: 678 SPGRPAFLRSPGLCGP----------GP--VPGGLSVPTPCGR-GAGDFSEADLADRAFP 724
PG+ PG+ GP GP +PG L + P GR G F
Sbjct: 769 PPGKRGLSGVPGIKGPRGDPGCPGAEGPAGIPGFLGLKGPKGREGHAGFPGVPGPPGHSC 828
Query: 725 VRGAGPIAGRRRRRGWTFA--AALRKGAPREQPPASPAASPCQAPRAPEKETEAPRLRGR 782
RGA I G+ G+ + A KG P + P PA P L GR
Sbjct: 829 ERGAPGIPGQPGLPGYPGSPGAPGGKGQPGDVGPPGPAGMK-----------GLPGLPGR 877
Query: 783 ATAVAPRPLPAAPGFSGLCVL--QPFPARSRGL----GVPSQQGPTGSPGCRDRASAP 834
A P LP PG G L P P RGL G P ++G G+ GC P
Sbjct: 878 PGAHGPPGLPGIPGPFGDDGLPGPPGPKGPRGLPGFPGFPGERGKPGAEGCPGAKGEP 935
Score = 50.4 bits (119), Expect = 7e-06
Identities = 125/480 (26%), Positives = 155/480 (32%), Gaps = 70/480 (14%)
Query: 417 DLALQQILEAVGLAGGI-EAAVLLRGARAGETTPLGEARGPCWKARGAVPS--GRLRGRP 473
D L+ A+G G E A++ + GE P G+ P + P GR RG P
Sbjct: 946 DRGLRGAKGAIGPPGDEGEMAIISQKGTPGEPGPPGDDGFPGERGDKGTPGMQGR-RGEP 1004
Query: 474 GRVA------GASGRRGASQARGGTGRAPARLRRG----RGMPGRVGNGVGEGR-GASEP 522
GR G G +G G G + RG G+PG G G G S
Sbjct: 1005 GRYGPPGFHRGEPGEKGQPGPPGPPGPPGSTGLRGFIGFPGLPGDQGEPGSPGPPGFSGI 1064
Query: 523 EGEPEPRARADLEVLQAGFERLQSLPELAERLGGRCPGQV-AHGVLARAGLLAAAARPGL 581
+G P+ G + P CPG A G G+ PG
Sbjct: 1065 DGARGPKGNKGDPASHFGPPGPKGEPG-----SPGCPGHFGASGEQGLPGIQGPRGSPGR 1119
Query: 582 AGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGP-G 640
G G P LR G+ R ++ + GP G
Sbjct: 1120 PGPPGSSGPPGCPGDHG-------MPGLRGQPGEMGDPGPRGLQGDPGIPGPPGIKGPSG 1172
Query: 641 SFGA----GL-------GAQGPRSSTPECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPG 689
S G GL GA G P PV G+ L ERG PG P + PG
Sbjct: 1173 SPGLNGLHGLKGQKGTKGASGLHDVGPPGPV------GIPG-LKGERGDPGSPG-ISPPG 1224
Query: 690 LCG----PGPVPGGLSVPTPCG---RGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTF 742
G PGP PG P P G R D + P GP G G
Sbjct: 1225 PRGKKGPPGP-PGSSGPPGPAGATGRAPKDIPDPGPPGDQGPPGPDGP-RGAPGPPGLPG 1282
Query: 743 AAALRKGAPREQPPASPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCV 802
+ L +G P + P P P P P G+ P P G G
Sbjct: 1283 SVDLLRGEPGDCGLPGPPGPP--GPPGPPGYKGFPGCDGKDGQKGPVGFPGPQGPHGF-- 1338
Query: 803 LQPFPARSRGL-GVPSQQGPTGSPGCRDRASAPRAGAEAGSMETFLRNGGLYPPPSPRAP 861
P P +GL G P ++GPTG PG R P ++ R GL P R P
Sbjct: 1339 --PGPPGEKGLPGPPGRKGPTGLPGPRGEPGPP------ADVDDCPRIPGLPGAPGMRGP 1390
Score = 39.3 bits (90), Expect = 0.016
Identities = 104/411 (25%), Positives = 132/411 (32%), Gaps = 66/411 (16%)
Query: 470 RGRPGRVA--GASGRRGASQARGGTGRAPARLRRGRGMPGRVGN-GVGEGRGASEPEGEP 526
+GR G G G G S RG G + G+PG G+ G G+G G P
Sbjct: 809 KGREGHAGFPGVPGPPGHSCERGAPG-----IPGQPGLPGYPGSPGAPGGKGQPGDVGPP 863
Query: 527 EPRARADLEVLQAGFERLQSLPELAERLGGRCPGQVAHGVLARAGLLAAAARPGLAGSGV 586
P AG + L LP GR PG AHG G+ GL G
Sbjct: 864 GP----------AGMKGLPGLP-------GR-PG--AHGPPGLPGIPGPFGDDGLPGPPG 903
Query: 587 QRALALAAAQLGGWTTCVVSPNL--RRGSRRAGNHRVREIEFGSALLAALNTLGPGSFG- 643
+ L G+ P RG A + E G ++ L PG G
Sbjct: 904 PKG----PRGLPGF------PGFPGERGKPGAEGCPGAKGEPGEKGMSGL----PGDRGL 949
Query: 644 -AGLGAQGPRSSTPECPVVNGSEWGLAAPLSP--ERGSPGRPAFLRSPGLCGPGPVPGGL 700
GA GP E ++ S+ G P + G PG +PG+ G PG
Sbjct: 950 RGAKGAIGPPGDEGEMAII--SQKGTPGEPGPPGDDGFPGERGDKGTPGMQGRRGEPGRY 1007
Query: 701 SVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALRKGAPREQPPASPA 760
P G G+ E + P GP G RG+ L P P
Sbjct: 1008 GPP---GFHRGEPGEKG---QPGPPGPPGP-PGSTGLRGFIGFPGLPGDQGEPGSPGPPG 1060
Query: 761 ASPCQAPRAPEKETEAPRLRGRATAVAPRP-LPAAPGFSGLCVLQPFPARSRGLGVPSQQ 819
S R P+ P P P PG G Q P G P +
Sbjct: 1061 FSGIDGARGPKGNKGDPASHFGPPGPKGEPGSPGCPGHFGASGEQGLPGIQGPRGSPGRP 1120
Query: 820 GPTGS---PGCRDRASAPRAGAEAGSM-----ETFLRNGGLYPPPSPRAPA 862
GP GS PGC P + G M + G+ PP + P+
Sbjct: 1121 GPPGSSGPPGCPGDHGMPGLRGQPGEMGDPGPRGLQGDPGIPGPPGIKGPS 1171
Score = 38.9 bits (89), Expect = 0.021
Identities = 120/492 (24%), Positives = 164/492 (33%), Gaps = 123/492 (25%)
Query: 389 CDFKTEPPALIQAPWGVHPGQHLPLQLIDLALQQILEA----VGLAGGIEAAVLLRGARA 444
C F+ +L PW L LI ++Q + + +G GG + +V
Sbjct: 11 CSFRLTK-SLATGPWS--------LILILFSVQYVYGSGKKYIGPCGGRDCSVC------ 55
Query: 445 GETTPLGEARGPCWKARGAVPSGRLRGRPGRVAGASGRRGASQARGGTGRAPARLRRG-R 503
P +RGP P G L G PG + G SG +G RG G A + +G
Sbjct: 56 -HCVPEKGSRGPPGPPGPQGPIGPL-GAPGPI-GLSGEKGMRGDRGPPGAAGDKGDKGPT 112
Query: 504 GMPGRVG-NGVGEGRGASEPEGEPEPRARADLEVLQAGFERLQSLPELAERLGGRCPGQV 562
G+PG G +G+ G P G+P +G + P GGR
Sbjct: 113 GVPGFPGLDGIPGHPGPPGPRGKPG----------MSGHNGSRGDPGFP---GGR----- 154
Query: 563 AHGVLARAGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVR 622
G L G L G G+ V A+ Q G R
Sbjct: 155 --GALGPGGPLGHPGEKGEKGNSVFILGAVKGIQ---------------GDR-------- 189
Query: 623 EIEFGSALLAALNTLGPGSFGAGLGAQGPRS-----------STPECPVVNGSEW-GLAA 670
G L L PGS+GAG G GP P P + G+ G+
Sbjct: 190 ----GDPGLPGL----PGSWGAG-GPAGPTGYPGEPGLVGPPGQPGRPGLKGNPGVGVKG 240
Query: 671 PLSP-----ERGSPGRPAFLRSPGLC------GPGPVPGGLSVPTPCGRG--AGDFSEAD 717
+ ++GSPG + P C G +PG + +P P GR +G ++ +
Sbjct: 241 QMGDPGEVGQQGSPGPTLLVEPPDFCLYKGEKGIKGIPGMVGLPGPPGRKGESGIGAKGE 300
Query: 718 LADRAFPVRGAGP-------IAGRRRRRGWT-----FAAALRKGAP--REQP-PASPAAS 762
FP P G + G F KG P R P P +
Sbjct: 301 KGIPGFPGPRGDPGSYGSPGFPGLKGELGLVGDPGLFGLIGPKGDPGNRGHPGPPGVLVT 360
Query: 763 PCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPT 822
P + P + P G V P P PG G +P A + +G P QG
Sbjct: 361 PPLPLKGPPGDPGFPGRYGETGDVGP---PGPPGLLG----RPGEACAGMIGPPGPQGFP 413
Query: 823 GSPGCRDRASAP 834
G PG A P
Sbjct: 414 GLPGLPGEAGIP 425
Score = 37.0 bits (84), Expect = 0.079
Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 21 PGEKGEKRRTKQIIAAQAGGEGGRAQPGLPCSVDLATGLEGP--LGGPAVDLDVGFSPG 77
PGEKGEK + I+ A G +G R PGLP GL G GGPA PG
Sbjct: 166 PGEKGEKGNSVFILGAVKGIQGDRGDPGLP-------GLPGSWGAGGPAGPTGYPGEPG 217
Score = 32.0 bits (71), Expect = 2.6
Identities = 98/373 (26%), Positives = 122/373 (32%), Gaps = 59/373 (15%)
Query: 470 RGRPGRVAGASGRRGASQARGGTGR-APARLRRGRGMPGRVGNGVGEGRGASEPEGEPEP 528
RG PG + G G GA G TG L G PGR G G G G+P
Sbjct: 189 RGDPG-LPGLPGSWGAGGPAGPTGYPGEPGLVGPPGQPGRPGLKGNPGVGVKGQMGDPG- 246
Query: 529 RARADLEVLQAGFERLQSLPELAERLGGRCPGQVAHGVLARAGLLAAAARPGLAG-SGVQ 587
EV Q G P L C + G+ G++ PG G SG+
Sbjct: 247 ------EVGQQGSPG----PTLLVEPPDFCLYKGEKGIKGIPGMVGLPGPPGRKGESGIG 296
Query: 588 RALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGS----ALLAALNTLG-PGSF 642
A + G+ P GS +GS L L +G PG F
Sbjct: 297 ---AKGEKGIPGFP----GPRGDPGS------------YGSPGFPGLKGELGLVGDPGLF 337
Query: 643 GAGLGAQGPRSSTPECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCG----PGPVPG 698
G +G +G + G L P P +G PG P F G G PGP PG
Sbjct: 338 GL-IGPKGDPGNRGH----PGPPGVLVTPPLPLKGPPGDPGFPGRYGETGDVGPPGP-PG 391
Query: 699 GLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALRKGAPREQP-PA 757
L P G + FP G + G G +A + G P P
Sbjct: 392 LLGRPGEACAG----MIGPPGPQGFP--GLPGLPGEAGIPGRPDSAPGKPGKPGSPGLPG 445
Query: 758 SPAASPCQAPRAPEKETEAPRLRGRATAVAP---RPLPAAPGFSGLCVLQPFPARSRG-L 813
+P P +G V P R G GLC +P P G
Sbjct: 446 APGLQGLPGSSVIYCSVGNPGPQGIKGKVGPPGGRGPKGEKGNEGLCACEPGPMGPPGPP 505
Query: 814 GVPSQQGPTGSPG 826
G+P +QG G G
Sbjct: 506 GLPGRQGSKGDLG 518
Score = 30.8 bits (68), Expect = 5.7
Identities = 58/210 (27%), Positives = 70/210 (33%), Gaps = 41/210 (19%)
Query: 639 PGSFGAGLGAQG-PRSSTPECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVP 697
PG GA G QG P SS C V N G+ + P G G + GLC P P
Sbjct: 441 PGLPGAP-GLQGLPGSSVIYCSVGNPGPQGIKGKVGPP-GGRGPKGEKGNEGLCACEPGP 498
Query: 698 GGLSVPTPCGRGAGDFSEADLA---------DRAFP----------VRGAGPIAGRRRRR 738
G P P G S+ DL D P GA G + +
Sbjct: 499 MG--PPGPPGLPGRQGSKGDLGLPGWLGTKGDPGPPGAEGPPGLPGKHGASGPPGNKGAK 556
Query: 739 GWTFAAALRKGAPREQPPASPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFS 798
G + + KG E+ P P P Q P GR + P PG
Sbjct: 557 GDMVVSRV-KGHKGERGPDGPPGFPGQ-----------PGSHGRDGHAGEKGDPGPPGDH 604
Query: 799 GLCVL--QPFPARSRGLGVPSQQGPTGSPG 826
+ FP LG P + GP G PG
Sbjct: 605 EDATPGGKGFPGP---LGPPGKAGPVGPPG 631
Score = 30.4 bits (67), Expect = 7.4
Identities = 53/195 (27%), Positives = 61/195 (31%), Gaps = 28/195 (14%)
Query: 674 PERGSPGRPAFLRSPGLCGP-GPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIA 732
PE+GS G PG GP GP+ G L P P G D RG A
Sbjct: 59 PEKGSRG------PPGPPGPQGPI-GPLGAPGPIGLSGEKGMRGD--------RGPPGAA 103
Query: 733 GRRRRRGWTFAAAL--RKGAPREQPPASPAASP-CQAPRAPEKETEAPRLRGRATAVAPR 789
G + +G T G P P P P + P RG P
Sbjct: 104 GDKGDKGPTGVPGFPGLDGIPGHPGPPGPRGKPGMSGHNGSRGDPGFPGGRGALGPGGPL 163
Query: 790 PLPAAPGFSGLCVLQPFPARSRGLG-VPSQQGPTGSPGCRDRASAPRAGAEAGSMETFLR 848
P G G V LG V QG G PG + AG AG
Sbjct: 164 GHPGEKGEKGNSVFI--------LGAVKGIQGDRGDPGLPGLPGSWGAGGPAGPTGYPGE 215
Query: 849 NGGLYPPPSPRAPAV 863
G + PP P P +
Sbjct: 216 PGLVGPPGQPGRPGL 230
Score = 30.4 bits (67), Expect = 7.4
Identities = 34/132 (25%), Positives = 42/132 (31%), Gaps = 7/132 (5%)
Query: 638 GPGSFGAGLGAQGPRSSTPECPVVNGSEW--GLAAPLS----PERGSPGRPAFLRSPGLC 691
GP G GP + +CP + G G+ P P P P PGL
Sbjct: 1355 GPTGLPGPRGEPGPPADVDDCPRIPGLPGAPGMRGPEGAMGLPGMRGPSGPGCKGEPGLD 1414
Query: 692 GPGPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALRKGAP 751
G V G P P GR GD E P G + G+ L +
Sbjct: 1415 GRRGVDGVPGSPGPPGR-KGDTGEDGYPGGPGPPGPIGDPGPKGFGPGYLGGFLLVLHSQ 1473
Query: 752 REQPPASPAASP 763
+Q P P P
Sbjct: 1474 TDQEPTCPLGMP 1485
>gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [Homo
sapiens]
Length = 828
Score = 50.8 bits (120), Expect = 5e-06
Identities = 107/400 (26%), Positives = 131/400 (32%), Gaps = 68/400 (17%)
Query: 452 EARGPCWKARGAVPSGRLRGRPGRVAGASGRRGASQARGGTGRAPARLRRGR-GMPGRVG 510
EA G C+K G +G G RG A+G G ++GR G PG G
Sbjct: 241 EAYGECYKVSCLEIPGP--------SGPKGYRGQKGAKGNMGEPGEPGQKGRQGDPGIEG 292
Query: 511 NGVGEGRGASEPEGEPEPRARADL--EVLQAGFERLQSLPELAERLGGRCPGQVAHGVLA 568
P G P P+ E + G + + P LA + G GQ G L
Sbjct: 293 -----------PIGFPGPKGVPGFKGEKGEFGADGRKGAPGLAGKNG--TDGQ--KGKLG 337
Query: 569 RAGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGS 628
R G PG G G+ SP RG + R G
Sbjct: 338 RIGPPGCKGDPGNRGPD-------------GYPGEAGSPG-ERGDQGGKGDPGRPGRRGP 383
Query: 629 ALLAALNTLGPGSFGA--GLGAQGPRSSTPECPVVNGSEWGLAAPLSPERGSPGR---PA 683
PG GA G QG S P P V G++ G P P +G PGR P
Sbjct: 384 ----------PGEIGAKGSKGYQG-NSGAPGSPGVKGAKGG-PGPRGP-KGEPGRRGDPG 430
Query: 684 FLRSPGLCGPGPVPGGLSVPTPCGRGAGDFSEADLADRAFP-VRGAGPIAGRRRRRGWTF 742
SPG GP G P G ++ DR P RG G ++G
Sbjct: 431 TKGSPGSDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPGKQG--- 487
Query: 743 AAALRKGAPREQPPASPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAP-GFSGLC 801
+G P + P + P P RG A P P P G G
Sbjct: 488 ----SRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRG-APGEKGEPGPRGPEGGRGDF 542
Query: 802 VLQPFPARSRGLGVPSQQGPTGSPGCRDRASAPRAGAEAG 841
L+ P R G P+ GP G PG R P E G
Sbjct: 543 GLKGEPGRKGEKGEPADPGPPGEPGPRGPRGVPGPEGEPG 582
Score = 32.0 bits (71), Expect = 2.6
Identities = 30/90 (33%), Positives = 35/90 (38%), Gaps = 12/90 (13%)
Query: 444 AGETTPLGEARGPCWKARGAVPSGRLRGRPGRVAGASGRRGASQARGGTGRAPARLRRGR 503
+G+ P G+ P + G RG PG G G RG RG G R+G
Sbjct: 501 SGQPGPKGDPGRPGFSYPGP------RGAPGE-KGEPGPRGPEGGRGDFGLKGEPGRKGE 553
Query: 504 ----GMPGRVGNGVGEG-RGASEPEGEPEP 528
PG G G RG PEGEP P
Sbjct: 554 KGEPADPGPPGEPGPRGPRGVPGPEGEPGP 583
>gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo
sapiens]
Length = 918
Score = 50.8 bits (120), Expect = 5e-06
Identities = 107/400 (26%), Positives = 131/400 (32%), Gaps = 68/400 (17%)
Query: 452 EARGPCWKARGAVPSGRLRGRPGRVAGASGRRGASQARGGTGRAPARLRRGR-GMPGRVG 510
EA G C+K G +G G RG A+G G ++GR G PG G
Sbjct: 241 EAYGECYKVSCLEIPGP--------SGPKGYRGQKGAKGNMGEPGEPGQKGRQGDPGIEG 292
Query: 511 NGVGEGRGASEPEGEPEPRARADL--EVLQAGFERLQSLPELAERLGGRCPGQVAHGVLA 568
P G P P+ E + G + + P LA + G GQ G L
Sbjct: 293 -----------PIGFPGPKGVPGFKGEKGEFGADGRKGAPGLAGKNG--TDGQ--KGKLG 337
Query: 569 RAGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGS 628
R G PG G G+ SP RG + R G
Sbjct: 338 RIGPPGCKGDPGNRGPD-------------GYPGEAGSPG-ERGDQGGKGDPGRPGRRGP 383
Query: 629 ALLAALNTLGPGSFGA--GLGAQGPRSSTPECPVVNGSEWGLAAPLSPERGSPGR---PA 683
PG GA G QG S P P V G++ G P P +G PGR P
Sbjct: 384 ----------PGEIGAKGSKGYQG-NSGAPGSPGVKGAKGG-PGPRGP-KGEPGRRGDPG 430
Query: 684 FLRSPGLCGPGPVPGGLSVPTPCGRGAGDFSEADLADRAFP-VRGAGPIAGRRRRRGWTF 742
SPG GP G P G ++ DR P RG G ++G
Sbjct: 431 TKGSPGSDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPGKQG--- 487
Query: 743 AAALRKGAPREQPPASPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAP-GFSGLC 801
+G P + P + P P RG A P P P G G
Sbjct: 488 ----SRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRG-APGEKGEPGPRGPEGGRGDF 542
Query: 802 VLQPFPARSRGLGVPSQQGPTGSPGCRDRASAPRAGAEAG 841
L+ P R G P+ GP G PG R P E G
Sbjct: 543 GLKGEPGRKGEKGEPADPGPPGEPGPRGPRGVPGPEGEPG 582
Score = 32.0 bits (71), Expect = 2.6
Identities = 30/90 (33%), Positives = 35/90 (38%), Gaps = 12/90 (13%)
Query: 444 AGETTPLGEARGPCWKARGAVPSGRLRGRPGRVAGASGRRGASQARGGTGRAPARLRRGR 503
+G+ P G+ P + G RG PG G G RG RG G R+G
Sbjct: 501 SGQPGPKGDPGRPGFSYPGP------RGAPGE-KGEPGPRGPEGGRGDFGLKGEPGRKGE 553
Query: 504 ----GMPGRVGNGVGEG-RGASEPEGEPEP 528
PG G G RG PEGEP P
Sbjct: 554 KGEPADPGPPGEPGPRGPRGVPGPEGEPGP 583
>gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Homo
sapiens]
Length = 1019
Score = 50.8 bits (120), Expect = 5e-06
Identities = 107/400 (26%), Positives = 131/400 (32%), Gaps = 68/400 (17%)
Query: 452 EARGPCWKARGAVPSGRLRGRPGRVAGASGRRGASQARGGTGRAPARLRRGR-GMPGRVG 510
EA G C+K G +G G RG A+G G ++GR G PG G
Sbjct: 241 EAYGECYKVSCLEIPGP--------SGPKGYRGQKGAKGNMGEPGEPGQKGRQGDPGIEG 292
Query: 511 NGVGEGRGASEPEGEPEPRARADL--EVLQAGFERLQSLPELAERLGGRCPGQVAHGVLA 568
P G P P+ E + G + + P LA + G GQ G L
Sbjct: 293 -----------PIGFPGPKGVPGFKGEKGEFGADGRKGAPGLAGKNG--TDGQ--KGKLG 337
Query: 569 RAGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGS 628
R G PG G G+ SP RG + R G
Sbjct: 338 RIGPPGCKGDPGNRGPD-------------GYPGEAGSPG-ERGDQGGKGDPGRPGRRGP 383
Query: 629 ALLAALNTLGPGSFGA--GLGAQGPRSSTPECPVVNGSEWGLAAPLSPERGSPGR---PA 683
PG GA G QG S P P V G++ G P P +G PGR P
Sbjct: 384 ----------PGEIGAKGSKGYQG-NSGAPGSPGVKGAKGG-PGPRGP-KGEPGRRGDPG 430
Query: 684 FLRSPGLCGPGPVPGGLSVPTPCGRGAGDFSEADLADRAFP-VRGAGPIAGRRRRRGWTF 742
SPG GP G P G ++ DR P RG G ++G
Sbjct: 431 TKGSPGSDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPGKQG--- 487
Query: 743 AAALRKGAPREQPPASPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAP-GFSGLC 801
+G P + P + P P RG A P P P G G
Sbjct: 488 ----SRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRG-APGEKGEPGPRGPEGGRGDF 542
Query: 802 VLQPFPARSRGLGVPSQQGPTGSPGCRDRASAPRAGAEAG 841
L+ P R G P+ GP G PG R P E G
Sbjct: 543 GLKGEPGRKGEKGEPADPGPPGEPGPRGPRGVPGPEGEPG 582
Score = 32.0 bits (71), Expect = 2.6
Identities = 30/90 (33%), Positives = 35/90 (38%), Gaps = 12/90 (13%)
Query: 444 AGETTPLGEARGPCWKARGAVPSGRLRGRPGRVAGASGRRGASQARGGTGRAPARLRRGR 503
+G+ P G+ P + G RG PG G G RG RG G R+G
Sbjct: 501 SGQPGPKGDPGRPGFSYPGP------RGAPGE-KGEPGPRGPEGGRGDFGLKGEPGRKGE 553
Query: 504 ----GMPGRVGNGVGEG-RGASEPEGEPEP 528
PG G G RG PEGEP P
Sbjct: 554 KGEPADPGPPGEPGPRGPRGVPGPEGEPGP 583
>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
Length = 655
Score = 50.4 bits (119), Expect = 7e-06
Identities = 92/407 (22%), Positives = 132/407 (32%), Gaps = 72/407 (17%)
Query: 460 ARGA--VPSGRLRGRPGRVAGASGRRGASQARGGTGRAPARLRRGRGMPGRVGNGVGEGR 517
A+GA + ++G PG + G G +GA + G G L +G G GN +G GR
Sbjct: 269 AKGAPGIAVAGMKGEPG-IPGTKGEKGAEGSPGLPG-----LLGQKGEKGDAGNSIGGGR 322
Query: 518 GASEPEGEPEPRARADLEVLQAGFERLQSLPELAERLGGRCPGQVAHGVLARAGLLAAAA 577
G P G P P G AG+
Sbjct: 323 GEPGPPGLPGP-----------------------------------PGPKGEAGVDGQVG 347
Query: 578 RPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTL 637
PG G +R AA + G P+ +GS+ + +++ + AL +
Sbjct: 348 PPGQPGDKGERG---AAGEQG--------PDGPKGSKGEPG-KGEMVDYNGNINEALQEI 395
Query: 638 GPGSFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSP----ERGSPGRPAFLRSPGLCGP 693
+ G G + P P + G + + P P E+G G+P + PG GP
Sbjct: 396 RTLALMGPPGLPG-QIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGP 454
Query: 694 GPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGP-IAGRRRRRGWTFAAALRKGAPR 752
PG P G S + ++ + P G +G A P
Sbjct: 455 ---PGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGP- 510
Query: 753 EQPPASPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRG 812
E PP P P+ A +G R PG SGL P
Sbjct: 511 EGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGP 570
Query: 813 LGVPSQQGPTGSPGCRDRASAPRAGAEAGSMETFLRNGGLYPPPSPR 859
+GVP GP G G + AG GL+ PP +
Sbjct: 571 IGVPGPAGPKGERGSKGDPGMTGPTGAAGL-------PGLHGPPGDK 610
Score = 46.6 bits (109), Expect = 1e-04
Identities = 76/291 (26%), Positives = 107/291 (36%), Gaps = 40/291 (13%)
Query: 551 AERLGGRCPGQV-AHG----VLARAGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVV 605
A G R PG++ A G V ARA A PG G +LA + L + T +
Sbjct: 9 AAATGARGPGELGAPGTVALVAARAERGARLPSPGSCGLLTLALCSLALSLLAHFRTAEL 68
Query: 606 SPNLRRGSRRAGNHRVREIEFGSALLAALNTL--GPGSFGAGLGAQGPRSSTPEC---PV 660
+ R G ++ +A+L +N L + + P++S P C P
Sbjct: 69 QARVLRLEAERGEQQME-----TAILGRVNQLLDEKWKLHSRRRREAPKTS-PGCNCPPA 122
Query: 661 VNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGAGDFSEADLAD 720
GS + RG PG+P PG GP + G P P GD
Sbjct: 123 PQGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGP----KGDMGLTGPPG 178
Query: 721 RAFPV--RGAGPIAGRRRRRGWTFAAALRKGAPREQPPASPAASPCQAPRAPEKETEAPR 778
+ P +G G RG A++ + PP P P P P
Sbjct: 179 QPGPQGQKGEKGQCGEYPHRGEQSQASI------QGPPGPPG------PPGPSGPLGHPG 226
Query: 779 LRGRATAVAPRPLPAAPGFSGLCVLQPFPAR--SRGL-GVPSQQGPTGSPG 826
L G + P LP PG G +Q + R RG+ G+P + G G+PG
Sbjct: 227 LPG---PMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPG 274
Score = 34.3 bits (77), Expect = 0.52
Identities = 52/205 (25%), Positives = 67/205 (32%), Gaps = 30/205 (14%)
Query: 647 GAQGPRSSTPECPVV----NGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGGLSV 702
G QG + +C S+ + P P G PG L PGL GP PG
Sbjct: 181 GPQGQKGEKGQCGEYPHRGEQSQASIQGPPGPP-GPPGPSGPLGHPGLPGPMGPPGLPGP 239
Query: 703 PTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWT-FAAALRKGAPR------EQP 755
P P G +R P + G+ +G A A KG P E+
Sbjct: 240 PGPKGDPGIQGYHGRKGERGMP-----GMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKG 294
Query: 756 PASPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGV 815
P + EK + G P LP PG G GV
Sbjct: 295 AEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEA------------GV 342
Query: 816 PSQQGPTGSPGCR-DRASAPRAGAE 839
Q GP G PG + +R +A G +
Sbjct: 343 DGQVGPPGQPGDKGERGAAGEQGPD 367
Score = 33.9 bits (76), Expect = 0.67
Identities = 31/82 (37%), Positives = 32/82 (39%), Gaps = 11/82 (13%)
Query: 22 GEKGEKRRTKQIIAAQAGGEGGRAQPGLPCSVDLATGLEGPLGGPAVDLDVGFSPGDDIA 81
G+KGEK I GG G PGLP G GP G VD VG PG
Sbjct: 306 GQKGEKGDAGNSIG---GGRGEPGPPGLP-------GPPGPKGEAGVDGQVG-PPGQPGD 354
Query: 82 GQSLGAAGGQVVHLPGGQLAVP 103
GAAG Q P G P
Sbjct: 355 KGERGAAGEQGPDGPKGSKGEP 376
Score = 31.2 bits (69), Expect = 4.4
Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 21 PGEKGEKRRTKQIIAAQAGGEGG-RAQPGLPCSVDLATGLEGPLGGPAV 68
PGEKGEK T Q + GE G + PG V G EGP G P +
Sbjct: 473 PGEKGEKGETGQAGSPGEKGEAGEKGNPG--AEVPGLPGPEGPPGPPGL 519
Score = 30.0 bits (66), Expect = 9.7
Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 454 RGPCWKARGAVPSGRLRGRPGR-----VAGASGRRGASQARGGTGRAPARLRRG-RGMPG 507
+GP K P G +G PG+ V G +G G+ +G G G +G G
Sbjct: 437 KGPRGKPGDMGPPGP-QGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAG 495
Query: 508 RVGNGVGEGRGASEPEGEPEP 528
GN E G PEG P P
Sbjct: 496 EKGNPGAEVPGLPGPEGPPGP 516
>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
Length = 660
Score = 50.4 bits (119), Expect = 7e-06
Identities = 92/407 (22%), Positives = 132/407 (32%), Gaps = 72/407 (17%)
Query: 460 ARGA--VPSGRLRGRPGRVAGASGRRGASQARGGTGRAPARLRRGRGMPGRVGNGVGEGR 517
A+GA + ++G PG + G G +GA + G G L +G G GN +G GR
Sbjct: 274 AKGAPGIAVAGMKGEPG-IPGTKGEKGAEGSPGLPG-----LLGQKGEKGDAGNSIGGGR 327
Query: 518 GASEPEGEPEPRARADLEVLQAGFERLQSLPELAERLGGRCPGQVAHGVLARAGLLAAAA 577
G P G P P G AG+
Sbjct: 328 GEPGPPGLPGP-----------------------------------PGPKGEAGVDGQVG 352
Query: 578 RPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTL 637
PG G +R AA + G P+ +GS+ + +++ + AL +
Sbjct: 353 PPGQPGDKGERG---AAGEQG--------PDGPKGSKGEPG-KGEMVDYNGNINEALQEI 400
Query: 638 GPGSFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSP----ERGSPGRPAFLRSPGLCGP 693
+ G G + P P + G + + P P E+G G+P + PG GP
Sbjct: 401 RTLALMGPPGLPG-QIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGP 459
Query: 694 GPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGP-IAGRRRRRGWTFAAALRKGAPR 752
PG P G S + ++ + P G +G A P
Sbjct: 460 ---PGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGP- 515
Query: 753 EQPPASPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRG 812
E PP P P+ A +G R PG SGL P
Sbjct: 516 EGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGP 575
Query: 813 LGVPSQQGPTGSPGCRDRASAPRAGAEAGSMETFLRNGGLYPPPSPR 859
+GVP GP G G + AG GL+ PP +
Sbjct: 576 IGVPGPAGPKGERGSKGDPGMTGPTGAAGL-------PGLHGPPGDK 615
Score = 43.9 bits (102), Expect = 7e-04
Identities = 77/299 (25%), Positives = 111/299 (37%), Gaps = 51/299 (17%)
Query: 551 AERLGGRCPGQV-AHG----VLARAGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVV 605
A G R PG++ A G V ARA A PG G +LA + L + T +
Sbjct: 9 AAATGARGPGELGAPGTVALVAARAERGARLPSPGSCGLLTLALCSLALSLLAHFRTAEL 68
Query: 606 SPNLRRGSRRAGNHRVREIEFGSALLAALNTL--GPGSFGAGLGAQGPRSSTPEC---PV 660
+ R G ++ +A+L +N L + + P++S P C PV
Sbjct: 69 QARVLRLEAERGEQQME-----TAILGRVNQLLDEKWKLHSRRRREAPKTS-PGCNCPPV 122
Query: 661 VNGSEW-----GLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGAGDFSE 715
G G P+ + G PG P GL GP PG P G+
Sbjct: 123 FQGQPGTRGFPGFPGPIGLD-GKPGHPGPKGDMGLTGPPGQPG------PQGQKGEKGQC 175
Query: 716 ADLADRAFPVRGA-----GPIAGRRRRRGWTFAAALRKGAPREQPPASPAASPCQAPRAP 770
+ R P+ + P+ RR +G A++ + PP P P P
Sbjct: 176 GEYPHRLLPLLNSVRLAPPPVIKRRTFQGEQSQASI------QGPPGPPG------PPGP 223
Query: 771 EKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPAR--SRGL-GVPSQQGPTGSPG 826
P L G + P LP PG G +Q + R RG+ G+P + G G+PG
Sbjct: 224 SGPLGHPGLPG---PMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPG 279
Score = 33.9 bits (76), Expect = 0.67
Identities = 31/82 (37%), Positives = 32/82 (39%), Gaps = 11/82 (13%)
Query: 22 GEKGEKRRTKQIIAAQAGGEGGRAQPGLPCSVDLATGLEGPLGGPAVDLDVGFSPGDDIA 81
G+KGEK I GG G PGLP G GP G VD VG PG
Sbjct: 311 GQKGEKGDAGNSIG---GGRGEPGPPGLP-------GPPGPKGEAGVDGQVG-PPGQPGD 359
Query: 82 GQSLGAAGGQVVHLPGGQLAVP 103
GAAG Q P G P
Sbjct: 360 KGERGAAGEQGPDGPKGSKGEP 381
Score = 33.1 bits (74), Expect = 1.1
Identities = 48/184 (26%), Positives = 61/184 (33%), Gaps = 26/184 (14%)
Query: 664 SEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGAGDFSEADLADRAF 723
S+ + P P G PG L PGL GP PG P P G +R
Sbjct: 207 SQASIQGPPGPP-GPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGM 265
Query: 724 PVRGAGPIAGRRRRRGWT-FAAALRKGAPR------EQPPASPAASPCQAPRAPEKETEA 776
P + G+ +G A A KG P E+ P + EK
Sbjct: 266 P-----GMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAG 320
Query: 777 PRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPGCR-DRASAPR 835
+ G P LP PG G GV Q GP G PG + +R +A
Sbjct: 321 NSIGGGRGEPGPPGLPGPPGPKGEA------------GVDGQVGPPGQPGDKGERGAAGE 368
Query: 836 AGAE 839
G +
Sbjct: 369 QGPD 372
Score = 31.2 bits (69), Expect = 4.4
Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 21 PGEKGEKRRTKQIIAAQAGGEGG-RAQPGLPCSVDLATGLEGPLGGPAV 68
PGEKGEK T Q + GE G + PG V G EGP G P +
Sbjct: 478 PGEKGEKGETGQAGSPGEKGEAGEKGNPG--AEVPGLPGPEGPPGPPGL 524
Score = 30.0 bits (66), Expect = 9.7
Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 454 RGPCWKARGAVPSGRLRGRPGR-----VAGASGRRGASQARGGTGRAPARLRRG-RGMPG 507
+GP K P G +G PG+ V G +G G+ +G G G +G G
Sbjct: 442 KGPRGKPGDMGPPGP-QGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAG 500
Query: 508 RVGNGVGEGRGASEPEGEPEP 528
GN E G PEG P P
Sbjct: 501 EKGNPGAEVPGLPGPEGPPGP 521
>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
Length = 1712
Score = 50.1 bits (118), Expect = 9e-06
Identities = 107/389 (27%), Positives = 133/389 (34%), Gaps = 70/389 (17%)
Query: 469 LRGRPGRVAGASGRRGASQARGGTGR----APARLRRGRGMPGRVGNGVGEGR----GAS 520
LRG PG AGA G G G GR P RG G VG +G G
Sbjct: 703 LRGIPG-FAGADGGPGPRGLPGDAGREGFPGPPGFIGPRGSKGAVGLPGPDGSPGPIGLP 761
Query: 521 EPEGEP------------EPRARADLEVLQAGFERLQSLPELAERLGGR----CPGQVAH 564
P+G P +P R D V G L+ LP G R PG
Sbjct: 762 GPDGPPGERGLPGEVLGAQPGPRGDAGV--PGQPGLKGLPGDRGPPGFRGSQGMPGMP-- 817
Query: 565 GVLARAGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREI 624
G+ + GL + +PGL G A Q G + P + G R
Sbjct: 818 GLKGQPGLPGPSGQPGLYGPPGLHGFPGAPGQEGP----LGLPGIP-GREGLPGDRGDPG 872
Query: 625 EFGSALLAALNTLGPGSFGAGL-GAQGPRSSTPECPVVNGSEWGLAAP-LSPERGSPGRP 682
+ G+ + L AG G QG P P G + P L +RGSPG
Sbjct: 873 DTGAPGPVGMKGLSGDRGDAGFTGEQGH----PGSPGFKGIDGMPGTPGLKGDRGSPGMD 928
Query: 683 AFLRSPGLCGPGPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTF 742
F PGL G PG +G F F + G +AG +G
Sbjct: 929 GFQGMPGLKGRPGFPGS--------KGEAGF---------FGIPGLKGLAGEPGFKG--- 968
Query: 743 AAALRKGAPREQPPASPAASPCQAPRAPEKETEAPR-LRGRATAVAPRPLPAAPGFSGLC 801
+G P P P P EK E P L+G A + +P PG SG+
Sbjct: 969 ----SRGDPGPPGPP-PVILPGMKDIKGEKGDEGPMGLKGYLGAKGIQGMPGIPGLSGIP 1023
Query: 802 VLQPFPARSRG----LGVPSQQGPTGSPG 826
L P +G +GVP G G PG
Sbjct: 1024 GLPGRPGHIKGVKGDIGVPGIPGLPGFPG 1052
Score = 48.1 bits (113), Expect = 3e-05
Identities = 100/399 (25%), Positives = 132/399 (33%), Gaps = 62/399 (15%)
Query: 465 PSGRLRGRPGRVA--GASGRRGASQARGGTGRAPARLRRGRGMPGRVGNGVGEG-RGASE 521
P ++G PG G G +G G G L+ RG PG G G G
Sbjct: 592 PGDGIKGPPGDPGYPGIPGTKGTPGEMGPPGLGLPGLKGQRGFPGDAGLPGPPGFLGPPG 651
Query: 522 PEGEPEPRARADLEVLQA-GFERLQSLPELAERLGGRCPGQVAHGVLARAGLLAAAARPG 580
P G P + D +V +A G +R +++ PG + GL PG
Sbjct: 652 PAGTPG-QIDCDTDVKRAVGGDRQEAIQ----------PGCIG----GPKGLPGLPGPPG 696
Query: 581 LAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTLGPG 640
G+ R + A GG G R RE G +GP
Sbjct: 697 PTGAKGLRGIPGFAGADGG-----------PGPRGLPGDAGREGFPGPP-----GFIGPR 740
Query: 641 SFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSP--ERGSPGRPAFLRSPGLCGPGPVPG 698
+G GP S P+ GL P P ERG PG PG G VPG
Sbjct: 741 GSKGAVGLPGPDGSPG--PI------GLPGPDGPPGERGLPGE-VLGAQPGPRGDAGVPG 791
Query: 699 GLSVP-TPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALR--KGAPREQP 755
+ P RG F + ++G + G + G L GAP ++
Sbjct: 792 QPGLKGLPGDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGPPGLHGFPGAPGQEG 851
Query: 756 PAS----PAASPCQAPRAPEKETEAPRL---------RGRATAVAPRPLPAAPGFSGLCV 802
P P R +T AP RG A + P +PGF G+
Sbjct: 852 PLGLPGIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGDAGFTGEQGHPGSPGFKGIDG 911
Query: 803 LQPFPARSRGLGVPSQQGPTGSPGCRDRASAPRAGAEAG 841
+ P G P G G PG + R P + EAG
Sbjct: 912 MPGTPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKGEAG 950
Score = 43.5 bits (101), Expect = 8e-04
Identities = 59/201 (29%), Positives = 79/201 (39%), Gaps = 21/201 (10%)
Query: 639 PGSFGA--GLGAQGPRSSTPECPVVN--GSEWGLAAPLSP----ERGSPGRPAFLRSPGL 690
PG G +GA GP+ + + + G P P + GSPGR PGL
Sbjct: 529 PGLKGVPGNIGAPGPKGAKGDSRTITTKGERGQPGVPGVPGMKGDDGSPGRDGLDGFPGL 588
Query: 691 CGPGPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALRKGA 750
PGP G+ P P G G G + G + +RG+ A L G
Sbjct: 589 --PGPPGDGIKGP-PGDPGYPGIPGTKGTPGEMGPPGLG-LPGLKGQRGFPGDAGL-PGP 643
Query: 751 PREQPPASPAASPCQAPRAPEKETEAPRLRG--RATAVAPRPLPAAPGFSGLCVLQPFPA 808
P P PA +P Q + +T+ R G R A+ P + G GL P P
Sbjct: 644 PGFLGPPGPAGTPGQI----DCDTDVKRAVGGDRQEAIQPGCIGGPKGLPGL-PGPPGPT 698
Query: 809 RSRGL-GVPSQQGPTGSPGCR 828
++GL G+P G G PG R
Sbjct: 699 GAKGLRGIPGFAGADGGPGPR 719
Score = 41.2 bits (95), Expect = 0.004
Identities = 52/214 (24%), Positives = 67/214 (31%), Gaps = 31/214 (14%)
Query: 676 RGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGAGDFSEAD-----------LADRAFP 724
RG PG P PG G PG +P P G GD + + D P
Sbjct: 362 RGDPGFPGAQGEPGSQGE---PGDPGLPGPPGLSIGDGDQRRGLPGEMGPKGFIGDPGIP 418
Query: 725 VRGAGPIA--GRRRRRGWT----------FAAALRKGAPREQPPASPAASPCQAPRAPEK 772
GP G+R G F L+ R P P + + P+ +
Sbjct: 419 ALYGGPPGPDGKRGPPGPPGLPGPPGPDGFLFGLKGAKGRAGFPGLPGSPGARGPKGWKG 478
Query: 773 ETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPGCR---D 829
+ R A+ + LP PG G + P R G P Q G G PG +
Sbjct: 479 DAGECRCTEGDEAI--KGLPGLPGPKGFAGINGEPGRKGDRGDPGQHGLPGFPGLKGVPG 536
Query: 830 RASAPRAGAEAGSMETFLRNGGLYPPPSPRAPAV 863
AP G T G P P P +
Sbjct: 537 NIGAPGPKGAKGDSRTITTKGERGQPGVPGVPGM 570
Score = 40.4 bits (93), Expect = 0.007
Identities = 53/207 (25%), Positives = 68/207 (32%), Gaps = 27/207 (13%)
Query: 639 PGSFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSP----------ERGSPGRPAFLRSP 688
PG FG G +GP P + GS+ P +P + G GRP P
Sbjct: 1286 PGIFGLK-GYRGP-PGPPGSAALPGSKGDTGNPGAPGTPGTKGWAGDSGPQGRPGVFGLP 1343
Query: 689 GLCGPGPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALRK 748
G GP G + P G + D FP GA G G A++
Sbjct: 1344 GEKGPRGEQGFMGNTGPTGAVGDRGPKGPKGDPGFP--GAPGTVGAPGIAGIPQKIAVQP 1401
Query: 749 GAPREQPPASPAASPCQ-APRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFP 807
G Q P +P + P+ P E G+A + A PGF G
Sbjct: 1402 GTVGPQGRRGPPGAPGEMGPQGPPGEPGFRGAPGKAGPQGRGGVSAVPGFRG-------- 1453
Query: 808 ARSRGLGVPSQQGPTGSPGCRDRASAP 834
G QGP G G R +P
Sbjct: 1454 ----DEGPIGHQGPIGQEGAPGRPGSP 1476
Score = 37.7 bits (86), Expect = 0.047
Identities = 59/222 (26%), Positives = 78/222 (35%), Gaps = 39/222 (17%)
Query: 647 GAQGPRSSTPECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPG-------- 698
G G ++ P V G + AP ERG PG P PG+ P + G
Sbjct: 1229 GDPGEANTLPGPVGVPGQKGDQGAP--GERGPPGSPGLQGFPGITPPSNISGAPGDKGAP 1286
Query: 699 ---GLS----VPTPCGRGAGDFSEADLADRAFP----VRGAGPIAGRRRRRGWTFAAALR 747
GL P P G A S+ D + P +G +G + R G F
Sbjct: 1287 GIFGLKGYRGPPGPPGSAALPGSKGDTGNPGAPGTPGTKGWAGDSGPQGRPG-VFGLPGE 1345
Query: 748 KGAPREQP----PASPAASPCQAPRAPEKETEAPRLRGRATAVA----PRPLPAAPGFSG 799
KG EQ A + P+ P+ + P G A P+ + PG G
Sbjct: 1346 KGPRGEQGFMGNTGPTGAVGDRGPKGPKGDPGFPGAPGTVGAPGIAGIPQKIAVQPGTVG 1405
Query: 800 LCVLQPFPARSRGL-GVPSQQGPTGSPGCRDRASAP-RAGAE 839
P RG G P + GP G PG AP +AG +
Sbjct: 1406 -------PQGRRGPPGAPGEMGPQGPPGEPGFRGAPGKAGPQ 1440
Score = 37.4 bits (85), Expect = 0.061
Identities = 44/167 (26%), Positives = 58/167 (34%), Gaps = 20/167 (11%)
Query: 667 GLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCG-------RGAGDFSEADLA 719
G P+ P+ G G P PGL G G P G RG F AD
Sbjct: 61 GQPGPVGPQ-GYNGPPGLQGFPGLQGRKGDKGERGAPGVTGPKGDVGARGVSGFPGAD-- 117
Query: 720 DRAFPVRGAGPIAGRRRRRGWTFAAALRKGAPREQPPASPAASPCQAPRAPEKETEAPRL 779
+ G G R R G+ + + + PP S + P+ P+ + P
Sbjct: 118 ----GIPGHPGQGGPRGRPGYDGCNGTQGDSGPQGPPGSEGFTGPPGPQGPKGQKGEPYA 173
Query: 780 RGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPG 826
+ R P PG G Q P R +G Q GP G+PG
Sbjct: 174 LPKEERDRYRGEPGEPGLVG---FQGPPGRPGHVG---QMGPVGAPG 214
Score = 33.1 bits (74), Expect = 1.1
Identities = 40/158 (25%), Positives = 55/158 (34%), Gaps = 30/158 (18%)
Query: 677 GSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRG-------AGDFSEADLADRAFPVRGAG 729
G+PG P F G+ G +PG P G G E A + G
Sbjct: 1182 GAPGLPGFPGLRGIRGLHGLPGTKGFPGSPGSDIHGDPGFPGPPGERGDPGEANTLPGPV 1241
Query: 730 PIAGRRRRRGWTFAAALRKGAPREQ-PPASPAASPCQAPRAPEKETEAPRLRGRATAVAP 788
+ G++ +GAP E+ PP SP P + AP +G
Sbjct: 1242 GVPGQKG----------DQGAPGERGPPGSPGLQGFPGITPPSNISGAPGDKG------- 1284
Query: 789 RPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPG 826
APG GL + P +P +G TG+PG
Sbjct: 1285 -----APGIFGLKGYRGPPGPPGSAALPGSKGDTGNPG 1317
Score = 32.0 bits (71), Expect = 2.6
Identities = 56/194 (28%), Positives = 67/194 (34%), Gaps = 26/194 (13%)
Query: 647 GAQGPRSSTPECPVVNGSEWGLAAP----LSPERGSPGRPAFLRSPGLCGPGPVPGGLSV 702
G QG TP + +G+ AP L RG PG P PG G PG
Sbjct: 1263 GLQGFPGITPPSNI-SGAPGDKGAPGIFGLKGYRGPPGPPGSAALPGSKGDTGNPGAPGT 1321
Query: 703 PTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALRKGAPREQPPASPAAS 762
P G AGD S F + G G + G T GA ++ P P
Sbjct: 1322 PGTKG-WAGD-SGPQGRPGVFGLPGEKGPRGEQGFMGNTGPT----GAVGDRGPKGPKGD 1375
Query: 763 PCQAPRAPEKETEAPRLRGRATAVAPRP----------LPAAPGFSGLCVLQPFPARSRG 812
P P AP AP + G +A +P P APG G Q P
Sbjct: 1376 P-GFPGAPGT-VGAPGIAGIPQKIAVQPGTVGPQGRRGPPGAPGEMGP---QGPPGEPGF 1430
Query: 813 LGVPSQQGPTGSPG 826
G P + GP G G
Sbjct: 1431 RGAPGKAGPQGRGG 1444
Score = 30.0 bits (66), Expect = 9.7
Identities = 32/125 (25%), Positives = 43/125 (34%), Gaps = 5/125 (4%)
Query: 639 PGSFGAGLGAQGPRSSTPECPVVNGSEWGLAAPLSP----ERGSPGRPAFLRSPGLCGPG 694
PG+ GA G G P G + P +P +G PG P F +PG GP
Sbjct: 1382 PGTVGAP-GIAGIPQKIAVQPGTVGPQGRRGPPGAPGEMGPQGPPGEPGFRGAPGKAGPQ 1440
Query: 695 PVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALRKGAPREQ 754
G +VP G + + P R P R + L K + +Q
Sbjct: 1441 GRGGVSAVPGFRGDEGPIGHQGPIGQEGAPGRPGSPGLPGMPGRSVSIGYLLVKHSQTDQ 1500
Query: 755 PPASP 759
P P
Sbjct: 1501 EPMCP 1505
>gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]
Length = 1142
Score = 49.7 bits (117), Expect = 1e-05
Identities = 116/444 (26%), Positives = 151/444 (34%), Gaps = 83/444 (18%)
Query: 427 VGLAG--GIEAAVLLRGARAGETTPLGEARGPCWKARGAVPSGRLRGRPGRVA--GASGR 482
VGL G GI ++G + +G P K P L G PG GA G
Sbjct: 542 VGLPGEHGIPGKQGIKGEKGDPGGIIGPPGLPGPKGEAGPPGKSLPGEPGLDGNPGAPGP 601
Query: 483 RGASQARGGTGRAPARLRRGRGMPGRVG-NGVG-EGR-GASEPEGEPEPRARADLEVLQA 539
RG RG G G PG +G G+G GR GA P GEP
Sbjct: 602 RGPKGERGLPGV--------HGSPGDIGPQGIGIPGRTGAQGPAGEP------------- 640
Query: 540 GFERLQSLPELAERLGGRCPGQVAHGVLARAGLLAAAARPGLAGS-GVQRALALAA---A 595
G + + LP L G PG GV R G +PGL G G AL L A
Sbjct: 641 GIQGPRGLPGLPGTPG--TPGN--DGVPGRDG------KPGLPGPPGDPIALPLLGDIGA 690
Query: 596 QLGGWT-TCVVS-PNLRRGSRRAGNHRVREIEFGSALLAALNTLGPGSFGAGLGAQGPRS 653
L + C S P L+ G ++ S +A +GP G +GP+
Sbjct: 691 LLKNFCGNCQASVPGLKSNKGEEGGAG-EPGKYDS--MARKGDIGPRGPPGIPGREGPKG 747
Query: 654 STPE--CPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGAG 711
S E P + G + + G G P +PG GP + G P P G
Sbjct: 748 SKGERGYPGIPGEKG--------DEGLQGIPGIPGAPGPTGPPGLMGRTGHPGPTGAKGE 799
Query: 712 DFSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALRKGAPREQPPASPAASPCQAPRAPE 771
S+ P P R G + ++ G P P + P
Sbjct: 800 KGSDGPPGKPGPPGPPGIPF---NERNGMSSLYKIKGGVNVPSYPGPPGPPGPKGDPGPV 856
Query: 772 KETEA---------PRLRGRATAVAPRPL------PAAPGFSGLCVLQPFPARSRG---- 812
E A P ++G P + P APG G+ P RG
Sbjct: 857 GEPGAMGLPGLEGFPGVKGDRGPAGPPGIAGMSGKPGAPGPPGV----PGEPGERGPVGD 912
Query: 813 LGVPSQQGPTGSPGCRDRASAPRA 836
+G P +GP+G PG + P A
Sbjct: 913 IGFPGPEGPSGKPGINGKDGIPGA 936
Score = 48.9 bits (115), Expect = 2e-05
Identities = 102/426 (23%), Positives = 134/426 (31%), Gaps = 73/426 (17%)
Query: 461 RGAVPSGRLRGRPGRVAGASGRRGASQARGGTGRAPARLRRGRGMPGRVG-NGVGEGRGA 519
+G L G PG G G +G ++G TG + +G P G NG +G
Sbjct: 309 KGEPGENGLHGAPG-FPGQKGEQGFEGSKGETGEKGEQGEKGD--PALAGLNGENGLKGD 365
Query: 520 SEPEGEPEPRARADLEVLQAGFERLQSLPELAERLGGRCPGQVA--HGVLARAGLLAAAA 577
P G P P+ + G P L LG + P G R G
Sbjct: 366 LGPHGPPGPKG-------EKGDTGPPGPPALPGSLGIQGPQGPPGKEGQRGRRGKTGPPG 418
Query: 578 RPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFGSALLAALNTL 637
+PG G + LGG+ N AG + + E G
Sbjct: 419 KPGPPGPPGPPGIQGIHQTLGGYYN---KDNKGNDEHEAGGLKGDKGETGL--------- 466
Query: 638 GPGSFGAGLGAQGPRSSTPECPVVNGSEWGLAAP-------LSPERGSPGRPAFLRSPGL 690
PG F +G +G + E P G + P + E G PG P + SPGL
Sbjct: 467 -PG-FPGSVGPKGQKGEPGE-PFTKGEKGDRGEPGVIGSQGVKGEPGDPGPPGLIGSPGL 523
Query: 691 ---------CGPGPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGAGPIAGRRRRRGWT 741
GP PG + +P G + + D G I G G
Sbjct: 524 KGQQGSAGSMGPRGPPGDVGLPGEHGIPGKQGIKGEKGD-------PGGIIGPPGLPGPK 576
Query: 742 FAAALRKGAPREQPPASPAASP---CQAPRAPEKETEAPRLRG--------------RAT 784
A G P + P P PR P+ E P + G R
Sbjct: 577 GEA----GPPGKSLPGEPGLDGNPGAPGPRGPKGERGLPGVHGSPGDIGPQGIGIPGRTG 632
Query: 785 AVAPRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPG-CRDRASAPRAGAEAGSM 843
A P P G GL L P GVP + G G PG D + P G +
Sbjct: 633 AQGPAGEPGIQGPRGLPGLPGTPGTPGNDGVPGRDGKPGLPGPPGDPIALPLLGDIGALL 692
Query: 844 ETFLRN 849
+ F N
Sbjct: 693 KNFCGN 698
Score = 42.0 bits (97), Expect = 0.002
Identities = 103/412 (25%), Positives = 135/412 (32%), Gaps = 63/412 (15%)
Query: 466 SGRLRGRPGRVA--GASGRRGASQARGGTGRAPARLRRG-RGMPGRVGNGVGEGRGASEP 522
+G L+G G G G G +G G + +G RG PG +G+ +G
Sbjct: 454 AGGLKGDKGETGLPGFPGSVGPKGQKGEPGEPFTKGEKGDRGEPGVIGS-----QGVKGE 508
Query: 523 EGEPEPRARADLEVLQAGFERLQSLPELAERLGGRCP-GQVA----HGVLARAGLLAAAA 577
G+P P G L+ A +G R P G V HG+ + G+
Sbjct: 509 PGDPGPPGLI-------GSPGLKGQQGSAGSMGPRGPPGDVGLPGEHGIPGKQGIKGEKG 561
Query: 578 RPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGNHRVREIEFG-SALLAALNT 636
PG G L + G + G+ A R + E G + +
Sbjct: 562 DPG--GIIGPPGLPGPKGEAGPPGKSLPGEPGLDGNPGAPGPRGPKGERGLPGVHGSPGD 619
Query: 637 LGPGSFG--AGLGAQGPRSSTPECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPG 694
+GP G GAQGP E G+ P RG PG P +PG G
Sbjct: 620 IGPQGIGIPGRTGAQGP-----------AGEPGIQGP----RGLPGLPG---TPGTPGND 661
Query: 695 PVPGGLSVPTPCGRGAGDFSEADLAD-----RAFPVRGAGPIAGRRRRRGWTFAAALRKG 749
VPG P G + L D + F + G + +G A G
Sbjct: 662 GVPGRDGKPGLPGPPGDPIALPLLGDIGALLKNFCGNCQASVPGLKSNKGEEGGA----G 717
Query: 750 APREQPPASPAASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPAR 809
P + S A PR P P G + R P PG G LQ P
Sbjct: 718 EPGKYD--SMARKGDIGPRGPPG---IPGREGPKGSKGERGYPGIPGEKGDEGLQGIP-- 770
Query: 810 SRGLGVPSQQGPTGSPGCRDRASAPRAGAEAGSMETFLRNGGLYPPPSPRAP 861
G+P GPTG PG R P G + G PP P P
Sbjct: 771 ----GIPGAPGPTGPPGLMGRTGHPGPTGAKGEKGSDGPPGKPGPPGPPGIP 818
Score = 40.0 bits (92), Expect = 0.009
Identities = 103/424 (24%), Positives = 139/424 (32%), Gaps = 72/424 (16%)
Query: 454 RGPCWKARGAVPSGRLRGRPGRVA----GASGRRGASQARGGTG-RAPARLRRGRGMPGR 508
RGP K +P + G PG + G GR GA G G + P L G PG
Sbjct: 602 RGP--KGERGLPG--VHGSPGDIGPQGIGIPGRTGAQGPAGEPGIQGPRGLPGLPGTPGT 657
Query: 509 VGNGVGEGR----GASEPEGEPEPRAR-ADLEVLQAGF--ERLQSLPEL----AERLGGR 557
GN GR G P G+P D+ L F S+P L E G
Sbjct: 658 PGNDGVPGRDGKPGLPGPPGDPIALPLLGDIGALLKNFCGNCQASVPGLKSNKGEEGGAG 717
Query: 558 CPGQVAHGVLARAGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAG 617
PG+ + +AR G + PG+ G + + + G P + G
Sbjct: 718 EPGK--YDSMARKGDIGPRGPPGIPGREGPKG---SKGERG-------YPGIPGEKGDEG 765
Query: 618 NHRVREIEFGSALLAALNTLG----PGSFGAG--LGAQGP--RSSTPECPVVNGSEWGLA 669
+ I +G PG GA G+ GP + P P + +E
Sbjct: 766 LQGIPGIPGAPGPTGPPGLMGRTGHPGPTGAKGEKGSDGPPGKPGPPGPPGIPFNERNGM 825
Query: 670 APLSPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGAGDFSEADLADRAFPVRGAG 729
+ L +G P++ PG GP PG + P G + DR AG
Sbjct: 826 SSLYKIKGGVNVPSYPGPPGPPGPKGDPGPVGEPGAMGLPGLEGFPGVKGDRG----PAG 881
Query: 730 P--IAGRRRRRGWTFAAALRKGAPREQPPAS---------PAASPC-------------- 764
P IAG + G + G P E+ P P+ P
Sbjct: 882 PPGIAGMSGKPGAPGPPGV-PGEPGERGPVGDIGFPGPEGPSGKPGINGKDGIPGAQGIM 940
Query: 765 --QAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPT 822
R P+ E + G + R P G G P +G P QGP
Sbjct: 941 GKPGDRGPKGERGDQGIPGDRGSQGERGKPGLTGMKGAIGPMGPPGNKGSMGSPGHQGPP 1000
Query: 823 GSPG 826
GSPG
Sbjct: 1001 GSPG 1004
Score = 32.3 bits (72), Expect = 2.0
Identities = 26/73 (35%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 465 PSGR--LRGRPGRVAGASGRRGASQARGGTGRAPARLRRGRGMPGRVGNGVGEGRGASEP 522
P G+ L G PG G G RG RG G L G+PG G+ GA P
Sbjct: 1058 PPGKDGLPGPPGD-PGPQGYRGQKGERGEPGIG---LPGSPGLPGTSALGLPGSPGAPGP 1113
Query: 523 EGEPEPRARADLE 535
+G P P R + E
Sbjct: 1114 QGPPGPSGRCNPE 1126
>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 350
Score = 48.9 bits (115), Expect = 2e-05
Identities = 67/219 (30%), Positives = 81/219 (36%), Gaps = 31/219 (14%)
Query: 653 SSTPECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPVPGGLSVPTPCGRGAGD 712
+ +P P VN +WG A +P S A S P PG + P+ A
Sbjct: 17 AESPARPRVN-EQWGSRAHPNPRSASSAAAAASSS------FPPPGFIHPPSS---RAAV 66
Query: 713 FSEADLADRAFPVRGAGPIAGRRRRRGWTFAAALRKGAP--REQPPASPAA--------- 761
S A A P +AG R G + LR A +Q A+P
Sbjct: 67 HSRLRAAPAAAPRLLPRVLAGAPARTGALAGSRLRAAAAAAHDQEAAAPTGRRWRRRPGP 126
Query: 762 SPCQAPRAPEKETEAPRLRGRATAVAPRP--LPAAPGFSGLCVLQPFPARSRGLGVPSQQ 819
SP PR+ T PR AT + P P P A G C PFPARSR P +
Sbjct: 127 SPPLQPRSRHPHTRYPRAVPEATPLRPPPGTRPRAKSRPG-CRSSPFPARSR---TPGEA 182
Query: 820 GPTGSPGCRDRASAPRAGAEAGSMETFLRNGGLYPPPSP 858
GP P R APR G + LR PPSP
Sbjct: 183 GP---PRGDPRPRAPRPG-DHPRRSPALRETPSLSPPSP 217
>gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo
sapiens]
Length = 177
Score = 48.5 bits (114), Expect = 3e-05
Identities = 51/159 (32%), Positives = 59/159 (37%), Gaps = 27/159 (16%)
Query: 716 ADLADRAFPVRGAGPIAGRRRR-----RGWTFAAALRKGAPREQPPASPAASPCQAPRAP 770
A L P RG P G R R R + L AP P AS + P RAP
Sbjct: 27 AGLGPGPSPRRGRLPSGGLRLRARPGRRALGLPSPLELAAPSLVPNASASPRPVSCRRAP 86
Query: 771 EKETE-APRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPGCRD 829
+ A R RGR P P P +P P P R+R LG P + +P R
Sbjct: 87 PRPVPGAARWRGR-----PEPRPGSPA-------GPAPTRARPLGAPGR----SAPPARR 130
Query: 830 RASAPRAGAEAGSMETFLRNGGLYPPPSPRAPAVCVQHL 868
R A G E LR P RA AVC H+
Sbjct: 131 RERELGTDARVGDGERELR-----PDARGRAEAVCSDHV 164
Score = 36.2 bits (82), Expect = 0.14
Identities = 46/150 (30%), Positives = 60/150 (40%), Gaps = 19/150 (12%)
Query: 392 KTEPPALIQAPWGVHPGQ-----HLPLQLIDLALQQILEAVGLAGGIE-AAVLLRGARAG 445
+T PA++ G+ PG LP + L + A+GL +E AA L +
Sbjct: 19 RTVRPAMLA---GLGPGPSPRRGRLPSGGLRLRARPGRRALGLPSPLELAAPSLVPNASA 75
Query: 446 ETTPLGEARGPCWKARGAVP-SGRLRGRPGRVAGASGRRGASQARGGTGRAPARLR-RGR 503
P+ R P GA GR RPG AG + R G PAR R R
Sbjct: 76 SPRPVSCRRAPPRPVPGAARWRGRPEPRPGSPAGPAPTRARPLGAPGRSAPPARRREREL 135
Query: 504 GMPGRVGNGVGEGRGASEPEGEPEPRARAD 533
G RVG+G E E P+ R RA+
Sbjct: 136 GTDARVGDG--------ERELRPDARGRAE 157
>gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo
sapiens]
Length = 177
Score = 48.5 bits (114), Expect = 3e-05
Identities = 51/159 (32%), Positives = 59/159 (37%), Gaps = 27/159 (16%)
Query: 716 ADLADRAFPVRGAGPIAGRRRR-----RGWTFAAALRKGAPREQPPASPAASPCQAPRAP 770
A L P RG P G R R R + L AP P AS + P RAP
Sbjct: 27 AGLGPGPSPRRGRLPSGGLRLRARPGRRALGLPSPLELAAPSLVPNASASPRPVSCRRAP 86
Query: 771 EKETE-APRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGLGVPSQQGPTGSPGCRD 829
+ A R RGR P P P +P P P R+R LG P + +P R
Sbjct: 87 PRPVPGAARWRGR-----PEPRPGSPA-------GPAPTRARPLGAPGR----SAPPARR 130
Query: 830 RASAPRAGAEAGSMETFLRNGGLYPPPSPRAPAVCVQHL 868
R A G E LR P RA AVC H+
Sbjct: 131 RERELGTDARVGDGERELR-----PDARGRAEAVCSDHV 164
Score = 36.2 bits (82), Expect = 0.14
Identities = 46/150 (30%), Positives = 60/150 (40%), Gaps = 19/150 (12%)
Query: 392 KTEPPALIQAPWGVHPGQ-----HLPLQLIDLALQQILEAVGLAGGIE-AAVLLRGARAG 445
+T PA++ G+ PG LP + L + A+GL +E AA L +
Sbjct: 19 RTVRPAMLA---GLGPGPSPRRGRLPSGGLRLRARPGRRALGLPSPLELAAPSLVPNASA 75
Query: 446 ETTPLGEARGPCWKARGAVP-SGRLRGRPGRVAGASGRRGASQARGGTGRAPARLR-RGR 503
P+ R P GA GR RPG AG + R G PAR R R
Sbjct: 76 SPRPVSCRRAPPRPVPGAARWRGRPEPRPGSPAGPAPTRARPLGAPGRSAPPARRREREL 135
Query: 504 GMPGRVGNGVGEGRGASEPEGEPEPRARAD 533
G RVG+G E E P+ R RA+
Sbjct: 136 GTDARVGDG--------ERELRPDARGRAE 157
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.138 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,087,403
Number of Sequences: 37866
Number of extensions: 2822027
Number of successful extensions: 20413
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 943
Number of HSP's that attempted gapping in prelim test: 13244
Number of HSP's gapped (non-prelim): 4727
length of query: 870
length of database: 18,247,518
effective HSP length: 111
effective length of query: 759
effective length of database: 14,044,392
effective search space: 10659693528
effective search space used: 10659693528
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.