Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100288926 Sequence: fasta or formatted (177aa) NCBI GI: 239745514
Description:

PREDICTED: hypothetical protein XP_002343509

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.8         28           2
 C cysteine            2.3          4           1
 D aspartate           2.3          4           1
 E glutamate           4.0          7           1
 F phenylalanine       0.6          1           1
 G glycine            11.9         21           2
 H histidine           0.6          1           1
 I isoleucine          0.6          1           1
 K lysine              0.0          0           0
 L leucine             9.0         16           1
 M methionine          1.7          3           1
 N asparagine          0.6          1           1
 P proline            15.3         27           2
 Q glutamine           0.0          0           0
 R arginine           18.1         32           3
 S serine              8.5         15           2
 T threonine           2.8          5           1
 V valine              5.6         10           1
 W tryptophan          0.6          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343509 
LOC100291828          1.000   PREDICTED: hypothetical protein XP_002344932 
LOC100127891          0.075   PREDICTED: hypothetical protein 
PRB1                  0.072   proline-rich protein BstNI subfamily 1 isoform 1 pre...
LOC100291076          0.072   PREDICTED: hypothetical protein XP_002347846 
LOC100287104          0.072   PREDICTED: hypothetical protein XP_002343630 
LRRC38                0.066   PREDICTED: leucine rich repeat containing 38 
LRRC38                0.066   PREDICTED: leucine rich repeat containing 38 
LOC100129571          0.066   PREDICTED: similar to hCG1646049 
LOC100129571          0.066   PREDICTED: similar to hCG1646049 
LOC100129571          0.066   PREDICTED: similar to hCG1646049 
TAF4                  0.066   TBP-associated factor 4 
TTBK1                 0.060   tau tubulin kinase 1 
CITED4                0.060   Cbp/p300-interacting transactivator, with Glu/Asp-ri...
SCARF2                0.060   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.060   scavenger receptor class F, member 2 isoform 2 [Homo...
POM121C               0.060   POM121 membrane glycoprotein (rat)-like 
SYNJ1                 0.057   synaptojanin 1 isoform a 
SYNJ1                 0.057   synaptojanin 1 isoform b 
POM121                0.057   nuclear pore membrane protein 121 
SAMD1                 0.057   sterile alpha motif domain containing 1 
DIAPH1                0.057   diaphanous 1 isoform 2 
DIAPH1                0.057   diaphanous 1 isoform 1 
LOC100292723          0.057   PREDICTED: hypothetical protein 
RBM42                 0.057   RNA binding motif protein 42 
SMARCA4               0.054   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.054   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.054   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.054   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.054   SWI/SNF-related matrix-associated actin-dependent r...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press