COL13A1 13984

Name: COL13A1	Sequence: fasta or formatted (655aa)		NCBI GI: 22027607
Description: alpha 1 type XIII collagen isoform 18		Referenced in: Collagen
Other entries for this name: alt prot [717aa] alpha 1 type XIII collagen isoform 20 alt prot [717aa] alpha 1 type XIII collagen isoform 1 alt prot [705aa] alpha 1 type XIII collagen isoform 2 alt prot [700aa] alpha 1 type XIII collagen isoform 3 alt prot [698aa] alpha 1 type XIII collagen isoform 4 alt prot [695aa] alpha 1 type XIII collagen isoform 5 alt prot [702aa] alpha 1 type XIII collagen isoform 6 alt prot [703aa] alpha 1 type XIII collagen isoform 7 alt prot [705aa] alpha 1 type XIII collagen isoform 8 alt prot [688aa] alpha 1 type XIII collagen isoform 9 alt prot [676aa] alpha 1 type XIII collagen isoform 10 alt prot [686aa] alpha 1 type XIII collagen isoform 11 alt prot [691aa] alpha 1 type XIII collagen isoform 12 alt prot [690aa] alpha 1 type XIII collagen isoform 13 alt prot [664aa] alpha 1 type XIII collagen isoform 14 alt prot [668aa] alpha 1 type XIII collagen isoform 15 alt prot [660aa] alpha 1 type XIII collagen isoform 16 alt prot [657aa] alpha 1 type XIII collagen isoform 17 alt prot [610aa] alpha 1 type XIII collagen isoform 19
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.9 45 3 C cysteine 1.1 7 1 D aspartate 3.4 22 1 E glutamate 6.6 43 1 F phenylalanine 0.6 4 1 G glycine 26.9 176 3 H histidine 1.7 11 1 I isoleucine 2.3 15 2 K lysine 6.6 43 2 L leucine 6.7 44 2 M methionine 1.7 11 1 N asparagine 1.5 10 1 P proline 17.6 115 2 Q glutamine 4.1 27 2 R arginine 4.4 29 4 S serine 2.9 19 1 T threonine 2.3 15 1 V valine 2.1 14 1 W tryptophan 0.3 2 1 Y tyrosine 0.5 3 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 alpha 1 type XIII collagen isoform 18 COL13A1 0.991 alpha 1 type XIII collagen isoform 14 COL13A1 0.988 alpha 1 type XIII collagen isoform 10 COL13A1 0.979 alpha 1 type XIII collagen isoform 5 COL13A1 0.978 alpha 1 type XIII collagen isoform 4 COL13A1 0.977 alpha 1 type XIII collagen isoform 2 COL13A1 0.973 alpha 1 type XIII collagen isoform 20 COL13A1 0.973 alpha 1 type XIII collagen isoform 1 COL13A1 0.959 alpha 1 type XIII collagen isoform 3 COL13A1 0.958 alpha 1 type XIII collagen isoform 9 COL13A1 0.954 alpha 1 type XIII collagen isoform 17 COL13A1 0.953 alpha 1 type XIII collagen isoform 11 COL13A1 0.952 alpha 1 type XIII collagen isoform 16 COL13A1 0.948 alpha 1 type XIII collagen isoform 8 COL13A1 0.944 alpha 1 type XIII collagen isoform 6 COL13A1 0.942 alpha 1 type XIII collagen isoform 7 COL13A1 0.924 alpha 1 type XIII collagen isoform 15 COL13A1 0.919 alpha 1 type XIII collagen isoform 13 COL13A1 0.917 alpha 1 type XIII collagen isoform 12 COL13A1 0.852 alpha 1 type XIII collagen isoform 19 COL25A1 0.325 collagen, type XXV, alpha 1 isoform 1 COL4A5 0.309 type IV collagen alpha 5 isoform 3 precursor COL4A5 0.309 type IV collagen alpha 5 isoform 1 precursor COL3A1 0.308 collagen type III alpha 1 preproprotein COL4A5 0.307 type IV collagen alpha 5 isoform 2 precursor COL5A1 0.307 alpha 1 type V collagen preproprotein COL11A1 0.305 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.305 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.305 alpha 1 type XI collagen isoform A preproprotein [Ho... COL5A3 0.305 collagen, type V, alpha 3 preproprotein Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.