Guide to the Human Genome
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Name: COL13A1 Sequence: fasta or formatted (660aa) NCBI GI: 22027603
Description:

alpha 1 type XIII collagen isoform 16

Referenced in:

Collagen

Other entries for this name:
alt prot [717aa] alpha 1 type XIII collagen isoform 20
alt prot [717aa] alpha 1 type XIII collagen isoform 1
alt prot [705aa] alpha 1 type XIII collagen isoform 2
alt prot [700aa] alpha 1 type XIII collagen isoform 3
alt prot [698aa] alpha 1 type XIII collagen isoform 4
alt prot [695aa] alpha 1 type XIII collagen isoform 5
alt prot [702aa] alpha 1 type XIII collagen isoform 6
alt prot [703aa] alpha 1 type XIII collagen isoform 7
alt prot [705aa] alpha 1 type XIII collagen isoform 8
alt prot [688aa] alpha 1 type XIII collagen isoform 9
alt prot [676aa] alpha 1 type XIII collagen isoform 10
alt prot [686aa] alpha 1 type XIII collagen isoform 11
alt prot [691aa] alpha 1 type XIII collagen isoform 12
alt prot [690aa] alpha 1 type XIII collagen isoform 13
alt prot [664aa] alpha 1 type XIII collagen isoform 14
alt prot [668aa] alpha 1 type XIII collagen isoform 15
alt prot [657aa] alpha 1 type XIII collagen isoform 17
alt prot [655aa] alpha 1 type XIII collagen isoform 18
alt prot [610aa] alpha 1 type XIII collagen isoform 19
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         44           3
 C cysteine            1.1          7           1
 D aspartate           3.2         21           1
 E glutamate           6.5         43           1
 F phenylalanine       0.9          6           1
 G glycine            25.9        171           3
 H histidine           1.7         11           1
 I isoleucine          2.1         14           1
 K lysine              6.7         44           2
 L leucine             7.3         48           2
 M methionine          1.7         11           1
 N asparagine          1.7         11           1
 P proline            17.3        114           3
 Q glutamine           4.2         28           2
 R arginine            4.7         31           4
 S serine              2.7         18           1
 T threonine           2.4         16           1
 V valine              2.6         17           1
 W tryptophan          0.3          2           1
 Y tyrosine            0.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   alpha 1 type XIII collagen isoform 16 
COL13A1               0.985   alpha 1 type XIII collagen isoform 4 
COL13A1               0.985   alpha 1 type XIII collagen isoform 9 
COL13A1               0.981   alpha 1 type XIII collagen isoform 3 
COL13A1               0.980   alpha 1 type XIII collagen isoform 2 
COL13A1               0.977   alpha 1 type XIII collagen isoform 1 
COL13A1               0.971   alpha 1 type XIII collagen isoform 20 
COL13A1               0.963   alpha 1 type XIII collagen isoform 17 
COL13A1               0.960   alpha 1 type XIII collagen isoform 11 
COL13A1               0.952   alpha 1 type XIII collagen isoform 8 
COL13A1               0.949   alpha 1 type XIII collagen isoform 14 
COL13A1               0.949   alpha 1 type XIII collagen isoform 5 
COL13A1               0.948   alpha 1 type XIII collagen isoform 18 
COL13A1               0.948   alpha 1 type XIII collagen isoform 6 
COL13A1               0.946   alpha 1 type XIII collagen isoform 7 
COL13A1               0.946   alpha 1 type XIII collagen isoform 10 
COL13A1               0.922   alpha 1 type XIII collagen isoform 13 
COL13A1               0.921   alpha 1 type XIII collagen isoform 12 
COL13A1               0.895   alpha 1 type XIII collagen isoform 15 
COL13A1               0.847   alpha 1 type XIII collagen isoform 19 
COL25A1               0.310   collagen, type XXV, alpha 1 isoform 1 
COL4A5                0.299   type IV collagen alpha 5 isoform 3 precursor 
COL5A2                0.298   alpha 2 type V collagen preproprotein 
COL4A5                0.298   type IV collagen alpha 5 isoform 1 precursor 
COL3A1                0.297   collagen type III alpha 1 preproprotein 
COL4A5                0.297   type IV collagen alpha 5 isoform 2 precursor 
COL5A1                0.295   alpha 1 type V collagen preproprotein 
COL25A1               0.295   collagen, type XXV, alpha 1 isoform 2 
COL11A1               0.292   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.292   alpha 1 type XI collagen isoform C preproprotein [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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