Guide to the Human Genome
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Name: SAMD1 Sequence: fasta or formatted (538aa) NCBI GI: 39930517
Description:

sterile alpha motif domain containing 1

Referenced in:

Additional Interaction Domain Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.4         88           7
 C cysteine            0.6          3           1
 D aspartate           4.3         23           3
 E glutamate           7.8         42           4
 F phenylalanine       1.3          7           1
 G glycine             9.5         51           2
 H histidine           1.5          8           2
 I isoleucine          1.7          9           1
 K lysine              2.6         14           1
 L leucine             5.8         31           3
 M methionine          1.1          6           1
 N asparagine          0.6          3           1
 P proline            17.7         95           5
 Q glutamine           4.8         26           4
 R arginine            9.5         51           3
 S serine              5.0         27           3
 T threonine           3.7         20           2
 V valine              4.6         25           2
 W tryptophan          0.6          3           1
 Y tyrosine            1.1          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sterile alpha motif domain containing 1 
SAMD13                0.082   sterile alpha motif domain containing 13 isoform 2 ...
SAMD13                0.082   sterile alpha motif domain containing 13 isoform 2 ...
SAMD13                0.082   sterile alpha motif domain containing 13 isoform 1 [...
WASL                  0.075   Wiskott-Aldrich syndrome gene-like protein 
FMNL1                 0.064   formin-like 1 
PRB2                  0.063   proline-rich protein BstNI subfamily 2 
FMN2                  0.060   formin 2 
ENAH                  0.058   enabled homolog isoform b 
ENAH                  0.058   enabled homolog isoform a 
LMTK3                 0.057   lemur tyrosine kinase 3 
FLJ22184              0.057   PREDICTED: hypothetical protein FLJ22184 
NACA                  0.057   nascent polypeptide-associated complex alpha subuni...
FLJ22184              0.055   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.055   PREDICTED: hypothetical protein LOC80164 
WASF2                 0.055   WAS protein family, member 2 
SFPQ                  0.054   splicing factor proline/glutamine rich (polypyrimidin...
DIAPH1                0.053   diaphanous 1 isoform 2 
DIAPH1                0.053   diaphanous 1 isoform 1 
TAF4                  0.053   TBP-associated factor 4 
RAPH1                 0.053   Ras association and pleckstrin homology domains 1 is...
SYN1                  0.053   synapsin I isoform Ia 
SYN1                  0.053   synapsin I isoform Ib 
WIPF3                 0.053   WAS/WASL interacting protein family, member 3 [Homo...
PRR12                 0.053   proline rich 12 
PRB1                  0.052   proline-rich protein BstNI subfamily 1 isoform 1 pre...
SH3BP1                0.051   SH3-domain binding protein 1 
WAS                   0.050   Wiskott-Aldrich syndrome protein 
CPSF6                 0.050   cleavage and polyadenylation specific factor 6, 68 ...
WBP11                 0.050   WW domain binding protein 11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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