SAMD1 27266

Name: SAMD1	Sequence: fasta or formatted (538aa)		NCBI GI: 39930517
Description: sterile alpha motif domain containing 1		Referenced in: Additional Interaction Domain Families
Composition: Amino acid Percentage Count Longest homopolymer A alanine 16.4 88 7 C cysteine 0.6 3 1 D aspartate 4.3 23 3 E glutamate 7.8 42 4 F phenylalanine 1.3 7 1 G glycine 9.5 51 2 H histidine 1.5 8 2 I isoleucine 1.7 9 1 K lysine 2.6 14 1 L leucine 5.8 31 3 M methionine 1.1 6 1 N asparagine 0.6 3 1 P proline 17.7 95 5 Q glutamine 4.8 26 4 R arginine 9.5 51 3 S serine 5.0 27 3 T threonine 3.7 20 2 V valine 4.6 25 2 W tryptophan 0.6 3 1 Y tyrosine 1.1 6 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 sterile alpha motif domain containing 1 SAMD13 0.082 sterile alpha motif domain containing 13 isoform 2 ... SAMD13 0.082 sterile alpha motif domain containing 13 isoform 2 ... SAMD13 0.082 sterile alpha motif domain containing 13 isoform 1 [... WASL 0.075 Wiskott-Aldrich syndrome gene-like protein FMNL1 0.064 formin-like 1 PRB2 0.063 proline-rich protein BstNI subfamily 2 FMN2 0.060 formin 2 ENAH 0.058 enabled homolog isoform b ENAH 0.058 enabled homolog isoform a LMTK3 0.057 lemur tyrosine kinase 3 FLJ22184 0.057 PREDICTED: hypothetical protein FLJ22184 NACA 0.057 nascent polypeptide-associated complex alpha subuni... FLJ22184 0.055 PREDICTED: hypothetical protein FLJ22184 FLJ22184 0.055 PREDICTED: hypothetical protein LOC80164 WASF2 0.055 WAS protein family, member 2 SFPQ 0.054 splicing factor proline/glutamine rich (polypyrimidin... DIAPH1 0.053 diaphanous 1 isoform 2 DIAPH1 0.053 diaphanous 1 isoform 1 TAF4 0.053 TBP-associated factor 4 RAPH1 0.053 Ras association and pleckstrin homology domains 1 is... SYN1 0.053 synapsin I isoform Ia SYN1 0.053 synapsin I isoform Ib WIPF3 0.053 WAS/WASL interacting protein family, member 3 [Homo... PRR12 0.053 proline rich 12 PRB1 0.052 proline-rich protein BstNI subfamily 1 isoform 1 pre... SH3BP1 0.051 SH3-domain binding protein 1 WAS 0.050 Wiskott-Aldrich syndrome protein CPSF6 0.050 cleavage and polyadenylation specific factor 6, 68 ... WBP11 0.050 WW domain binding protein 11 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.